FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_HALHL (10 kDa chaperonin OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            SI+PL DRV+++    E  + GGI +P TA  KP  G+V+AVG GKT+    +  + V  G QV++ KYAGTE++ +G ++L++REDD++ + E
Sbjct:    2 SIRPLHDRVVIQRLEEERTSPGGIVIPDTAAEKPMKGKVIAVGHGKTLDNGERRPVEVNVGDQVLFGKYAGTEVKIDGQDYLVMREDDIMAVFE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CAUSK (10 kDa chaperonin OS=Caulobacter sp. (strain K31) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  293 KPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +PLGDRVLVK    E KT GGI +P T + KPQ GEVVAVG G    K  +  + VK G ++++ K++GTE++ +G + LI++E DV+GI+E
Sbjct:    4 RPLGDRVLVKRVEEETKTKGGIIIPDTVKEKPQEGEVVAVGPGARNDKGDIVALDVKAGDRILFGKWSGTEVKVDGQDLLIMKESDVLGIVE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BARBK (10 kDa chaperonin OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            T  +PL DRV+V+    E KT GGI +P TAQ KPQ GEV+AVG G       ++ + VK G ++++ K++GTE++ NG   LI++E D++GIL
Sbjct:    4 TKFRPLHDRVVVRRVESENKTAGGIIIPDTAQEKPQEGEVIAVGNGVLNDNGQRVSLEVKEGDRILFGKWSGTEVKINGEELLIMKESDIMGIL 97          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH101_RHIME (10 kDa chaperonin 1 OS=Rhizobium meliloti GN=groS1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 42/94 (44.68%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            T+ +PL DRV+V+    EEKT GGI +P TA+ KPQ GE+VAVG G      K + + VK G ++++ K++GTE++ NG + LI++E D++G++
Sbjct:    4 TNFRPLHDRVVVRRVESEEKTKGGIIIPDTAKEKPQEGEIVAVGSGARDESGKVVPLDVKAGDRILFGKWSGTEVKINGEDLLIMKEADIMGVI 97          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_SYNSC (10 kDa chaperonin OS=Synechococcus sp. (strain CC9605) GN=groS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GEVV VG GK     ++    V  G  V+YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDNVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STRAL (10 kDa chaperonin OS=Streptomyces albus G GN=groS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +IKPL DR++V+    E+ T  G+ +P TA+ KPQ G V+AVG G+     +L + VK G  V+YSKY GTE+++NG  +L+L   DV+ I+E
Sbjct:    9 AIKPLEDRIVVQPLDAEQTTASGLVIPDTAKEKPQEGVVLAVGPGRFENGERLPLDVKTGDVVLYSKYGGTEVKYNGEEYLVLSARDVLAIIE 101          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PROMM (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9313) GN=groS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++ +   +++L E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLSTDEYVLLSEKDILAVV 102          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PROM9 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9312) GN=groS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  +++L E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PROM2 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9215) GN=groS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  +++L E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PROM0 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9301) GN=groS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  +++L E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_HALHL4.624e-1743.6210 kDa chaperonin OS=Halorhodospira halophila (str... [more]
CH10_CAUSK4.624e-1748.9110 kDa chaperonin OS=Caulobacter sp. (strain K31) ... [more]
CH10_BARBK4.624e-1745.7410 kDa chaperonin OS=Bartonella bacilliformis (str... [more]
CH101_RHIME4.624e-1744.6810 kDa chaperonin 1 OS=Rhizobium meliloti GN=groS1... [more]
CH10_SYNSC6.039e-1746.8110 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_STRAL6.039e-1745.1610 kDa chaperonin OS=Streptomyces albus G GN=groS ... [more]
CH10_PROMM6.039e-1746.8110 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM96.039e-1743.6210 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM26.039e-1743.6210 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM06.039e-1743.6210 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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