FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_NOVAD (10 kDa chaperonin OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=groS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 39/93 (41.94%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            + +PL DRVLV+    EEKT GGI +P +A+ KP  G VVAVG G +    T   + VK   +V++ K++GTE++ +G + LI++E D++G++
Sbjct:    2 TFRPLHDRVLVRRVEAEEKTAGGIIIPDSAKEKPAEGIVVAVGSGARAENGTITPLDVKANDRVLFGKWSGTEVKVDGEDLLIMKESDILGVI 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_DECAR (10 kDa chaperonin OS=Dechloromonas aromatica (strain RCB) GN=groS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +I+PL DRV+VK    E  T  GI +P +A  KP  GEV+AVG GK     K + + VK G +V++ KYAG  ++ +G   L++RE+D++G+L
Sbjct:    2 NIRPLHDRVIVKRVEAERTTASGIVIPDSAGEKPDQGEVLAVGPGKRDDNGKQIALDVKVGDRVLFGKYAGQAVKVDGQEVLVMREEDIMGVL 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BIFLO (10 kDa chaperonin OS=Bifidobacterium longum GN=groS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 37/92 (40.22%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            + PL D+++VK    + +T  G+++P  A+ KPQ GEV+AVG G+   K  ++ + VK G +V+YSKY GTE+ + G ++LI+   D++ IL
Sbjct:    5 LTPLEDKIIVKQAEAQTQTASGLYIPDNAKEKPQQGEVLAVGPGRRDDKGERIPMDVKVGDKVLYSKYGGTEVHYEGEDYLIVGARDILAIL 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BIFLI (10 kDa chaperonin OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=groS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 37/92 (40.22%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            + PL D+++VK    + +T  G+++P  A+ KPQ GEV+AVG G+   K  ++ + VK G +V+YSKY GTE+ + G ++LI+   D++ IL
Sbjct:    5 LTPLEDKIIVKQAEAQTQTASGLYIPDNAKEKPQQGEVLAVGPGRRDDKGERIPMDVKVGDKVLYSKYGGTEVHYEGEDYLIVGARDILAIL 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BIFLD (10 kDa chaperonin OS=Bifidobacterium longum (strain DJO10A) GN=groS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 37/92 (40.22%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            + PL D+++VK    + +T  G+++P  A+ KPQ GEV+AVG G+   K  ++ + VK G +V+YSKY GTE+ + G ++LI+   D++ IL
Sbjct:    5 LTPLEDKIIVKQAEAQTQTASGLYIPDNAKEKPQQGEVLAVGPGRRDDKGERIPMDVKVGDKVLYSKYGGTEVHYEGEDYLIVGARDILAIL 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_XANOP (10 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=groS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDIS-VKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            SIKPL DRV+VK    +E + GGI +P +A+ K   GEVVA+G GK +    L    VK G +VIY +YAG+  +  G  + +LREDD++ ++
Sbjct:    2 SIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLRAPVVKVGDKVIYGQYAGSSYKSEGVEYKVLREDDILAVI 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_XANOM (10 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=groS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDIS-VKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            SIKPL DRV+VK    +E + GGI +P +A+ K   GEVVA+G GK +    L    VK G +VIY +YAG+  +  G  + +LREDD++ ++
Sbjct:    2 SIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLRAPVVKVGDKVIYGQYAGSSYKSEGVEYKVLREDDILAVI 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_XANCP (10 kDa chaperonin OS=Xanthomonas campestris pv. campestris GN=groS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDIS-VKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            SIKPL DRV+VK    +E + GGI +P +A+ K   GEVVA+G GK +    L    VK G +VIY +YAG+  +  G  + +LREDD++ ++
Sbjct:    2 SIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLRAPVVKVGDKVIYGQYAGSSYKSEGVEYKVLREDDILAVI 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_XANCH (10 kDa chaperonin OS=Xanthomonas campestris pv. phaseoli GN=groS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDIS-VKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            SIKPL DRV+VK    +E + GGI +P +A+ K   GEVVA+G GK +    L    VK G +VIY +YAG+  +  G  + +LREDD++ ++
Sbjct:    2 SIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLRAPVVKVGDKVIYGQYAGSSYKSEGVEYKVLREDDILAVI 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_XANCB (10 kDa chaperonin OS=Xanthomonas campestris pv. campestris (strain B100) GN=groS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDIS-VKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            SIKPL DRV+VK    +E + GGI +P +A+ K   GEVVA+G GK +    L    VK G +VIY +YAG+  +  G  + +LREDD++ ++
Sbjct:    2 SIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLRAPVVKVGDKVIYGQYAGSSYKSEGVEYKVLREDDILAVI 94          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_NOVAD3.664e-1441.9410 kDa chaperonin OS=Novosphingobium aromaticivora... [more]
CH10_DECAR3.664e-1443.0110 kDa chaperonin OS=Dechloromonas aromatica (stra... [more]
CH10_BIFLO3.664e-1440.2210 kDa chaperonin OS=Bifidobacterium longum GN=gro... [more]
CH10_BIFLI3.664e-1440.2210 kDa chaperonin OS=Bifidobacterium longum subsp.... [more]
CH10_BIFLD3.664e-1440.2210 kDa chaperonin OS=Bifidobacterium longum (strai... [more]
CH10_XANOP4.785e-1444.0910 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae... [more]
CH10_XANOM4.785e-1444.0910 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae... [more]
CH10_XANCP4.785e-1444.0910 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]
CH10_XANCH4.785e-1444.0910 kDa chaperonin OS=Xanthomonas campestris pv. ph... [more]
CH10_XANCB4.785e-1444.0910 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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