FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_VARPS (10 kDa chaperonin OS=Variovorax paradoxus (strain S110) GN=groS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLD-ISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            ++PL DRV+VK    E KT  GI +P  A  KP  GEV+AVG GK   K  L  ++VK G +V++ KY+G  ++ +G   L+++EDD+  ++E
Sbjct:    3 LRPLADRVIVKRVDSETKTASGIVIPDAAAEKPDQGEVLAVGPGKRTEKGDLTALTVKVGDRVLFGKYSGQTVKVDGDELLVMKEDDLFAVVE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_ANASL (10 kDa chaperonin OS=Anabaena sp. (strain L31) GN=groS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 38/94 (40.43%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++KPLGDRV VK+ +  EK    ++ P TA+ KPQ GEVVA+G GK     ++ ++ VK G  ++YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLGDRVFVKV-SASEKRPRRLYFPDTAKEKPQVGEVVALGAGKRNDDGSRQELEVKVGDLLLYSKYAGTDVKLGTEEYVLLSEKDILAMV 101          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_THEMA (10 kDa chaperonin OS=Thermotoga maritima GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 2
Query:  296 PLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            PLG+R+L+K    E+KT+GGI LP +A+ KP   EVVAV  GK     K DI V  G +VIYSKYAGTE++ +  +++I+  +D++  +E
Sbjct:    6 PLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAV--GKIDDDEKFDIKV--GDKVIYSKYAGTEIKIDDEDYIIIDVNDILAKIE 91          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BURPP (10 kDa chaperonin OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +++PL DRV+VK    E KT  GI +P  A  KP  GE++AVG GK   K  ++ + VK G +V++ KYAG  ++ +G   L++RE+D++ +++
Sbjct:    2 NLRPLHDRVIVKRLDQETKTASGIVIPEAAAEKPDQGEILAVGPGKRDDKGAQIALDVKVGDRVLFGKYAGQTVKVDGNELLVMREEDIMAVVQ 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_WOLPM (10 kDa chaperonin OS=Wolbachia pipientis wMel GN=groS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            S+  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+GEG +     ++ ++VK G +V Y ++AGTE+E N    ++++E D++ +++
Sbjct:    5 SLNVLDDSVL--IKPISEEKQGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERVTLTVKAGDKVFYRQWAGTEIEHNNEKLIVMKESDILAVIK 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_THENE (10 kDa chaperonin OS=Thermotoga neapolitana GN=groS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  296 PLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            PLG+R+L+K    E+KT+GGI LP +A+ KP   EVVAV  GK   + K DI V  G +VI+SKYAGTE++ +  +++I+  +D++  +E
Sbjct:    6 PLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAV--GKIEDEEKFDIKV--GDKVIFSKYAGTEIKIDDEDYIIIDVNDILAKIE 91          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_RENSM (10 kDa chaperonin OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=groS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            SIKPL DR++V+    E+ T  G+ +P +A+ KPQ GEVVAVG G+      ++ + V  G  V+YSKY GTE++  G   L+L   DV+ I+
Sbjct:    4 SIKPLEDRIVVRQLDAEQTTASGLVIPDSAKEKPQEGEVVAVGPGRVDDNGNRVPVDVAVGDVVLYSKYGGTEVKTGGEELLVLSARDVLAIV 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_JANMA (10 kDa chaperonin OS=Janthinobacterium sp. (strain Marseille) GN=groS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +++PL DRV+VK    E KT  G+ +P  A  KP  GE++A+G GK +   K+  + VK G +V++ KYAG  ++ +G   L++RE+D++ I++
Sbjct:    2 NLRPLHDRVIVKRLDQETKTASGLIIPEAAAEKPDQGEILAIGNGKILEDGKVRPLDVKVGDRVLFGKYAGQTVKVDGNEVLVMREEDIMAIVQ 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BIFA0 (10 kDa chaperonin OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=groS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            + PL D+++VK    E +T  G+ +P  A+ KPQ GEV+AVG G+   + K + + VK G +V+YSKY GTE+ F G  +LI+   D++ ++
Sbjct:    5 LTPLEDKIIVKQAEAETQTASGLIIPDNAKEKPQQGEVLAVGPGRRDDEGKRVPMDVKVGDKVLYSKYGGTEVHFKGEEYLIVSARDLLAVV 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_ACIAC (10 kDa chaperonin OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=groS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDI-SVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            S++PL DRV+VK    E  T  GI +P  A  KP  G V+AVG GK   K +L + SVK G +V++ KY+G  ++ NG   L+++EDD+  ++E
Sbjct:    2 SLRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGVVLAVGPGKKNDKGELSVLSVKVGDRVLFGKYSGQTVKVNGDELLVMKEDDLFAVVE 95          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_VARPS1.066e-1341.9410 kDa chaperonin OS=Variovorax paradoxus (strain ... [more]
CH10_ANASL1.066e-1340.4310 kDa chaperonin OS=Anabaena sp. (strain L31) GN=... [more]
CH10_THEMA1.392e-1346.6710 kDa chaperonin OS=Thermotoga maritima GN=groS P... [more]
CH10_BURPP1.392e-1339.3610 kDa chaperonin OS=Burkholderia phytofirmans (st... [more]
CH10_WOLPM1.818e-1339.3610 kDa chaperonin OS=Wolbachia pipientis wMel GN=g... [more]
CH10_THENE1.818e-1345.5610 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH10_RENSM1.818e-1343.0110 kDa chaperonin OS=Renibacterium salmoninarum (s... [more]
CH10_JANMA1.818e-1338.3010 kDa chaperonin OS=Janthinobacterium sp. (strain... [more]
CH10_BIFA01.818e-1340.2210 kDa chaperonin OS=Bifidobacterium animalis subs... [more]
CH10_ACIAC1.818e-1342.5510 kDa chaperonin OS=Acidovorax avenae subsp. citr... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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