FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_RALSO (10 kDa chaperonin OS=Ralstonia solanacearum GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+A+G GK   K   + + VK G +V++ KYAG  ++ +G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDNETKTASGIVIPDAAAEKPDQGEVLAIGPGKKDDKGNPIALDVKVGDRVLFGKYAGQAVKVDGQELLVMREEDIMAVV 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_RALME (10 kDa chaperonin OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+A+G GK   K   + + VK G +V++ KYAG  ++ +G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQGVKVDGQELLVMREEDIMAVV 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_RALEJ (10 kDa chaperonin OS=Ralstonia eutropha (strain JMP134) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+A+G GK   K   + + VK G +V++ KYAG  ++ +G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQGVKVDGQELLVMREEDIMAVV 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_RALEH (10 kDa chaperonin OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+A+G GK   K   + + VK G +V++ KYAG  ++  G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQAVKVEGQELLVMREEDIMAVV 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_POLNS (10 kDa chaperonin OS=Polynucleobacter necessarius (strain STIR1) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDI-SVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +++PL DRV++K    E KT  GI +P  A  KP  GEV+AVG GK     KL+   VK G +V++ KYAG  ++ +    +++REDD++ +++
Sbjct:    2 NLRPLHDRVIIKRLDQESKTASGIIIPDAAAEKPDQGEVLAVGPGKRDDGGKLNAPDVKVGDRVLFGKYAGQTVKVDSEELIVMREDDIMAVVQ 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_DELAS (10 kDa chaperonin OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 38/94 (40.43%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+AVG GK   K + + ++VK G +V++ KY+G  ++ +G   L+++EDD+  ++E
Sbjct:    2 NLRPLHDRVIVKRLENETKTASGIVIPENAAEKPDQGEVLAVGPGKKNDKGEVIALNVKVGDRVLFGKYSGQTVKVHGDELLVMKEDDLFAVVE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CUPTR (10 kDa chaperonin OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+A+G GK   K   + + VK G +V++ KYAG  ++ +G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQGVKVDGQELLVMREEDIMAVV 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_ALCBS (10 kDa chaperonin OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            SI+PL DRVLV+ +  E K+ GGI LP +A  KP  GEV+AVG GK T       + VK G  VI+ +Y+G+ ++  G   LI+ E +++ ++E
Sbjct:    2 SIRPLHDRVLVRREEEETKSAGGIVLPGSAAEKPSRGEVIAVGNGKITENGDVRPLDVKAGDTVIFGQYSGSTVKVEGEELLIMSEAEILAVVE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_THEYD (10 kDa chaperonin OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVE-EKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            IKPL DRV+VK  + E EKT GGI++P  A+ KPQ G VV +G             VK G  V++ KYAG++++ +   +LI++E++++GI+E
Sbjct:    3 IKPLKDRVVVKFSSEELEKTPGGIYVPDVAKEKPQKGTVVEIGSEVK--------EVKVGDTVLFDKYAGSKIKVDDVEYLIIKEEEILGIVE 87          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_POLNA (10 kDa chaperonin OS=Polaromonas naphthalenivorans (strain CJ2) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 38/94 (40.43%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLD-ISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +++PL DRV+VK    E KT  GI +P +A  KP  GEV+AVG GK   K +L  ++VK G +V++ KY+G  ++ +G   L+++E+D+  ++E
Sbjct:    2 NLRPLHDRVIVKRVENETKTASGIVIPDSAAEKPDQGEVLAVGPGKKNDKGELGAMAVKVGDRVLFGKYSGQTVKVDGDELLVMKEEDLFAVVE 95          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_RALSO4.051e-1339.7810 kDa chaperonin OS=Ralstonia solanacearum GN=gro... [more]
CH10_RALME4.051e-1339.7810 kDa chaperonin OS=Ralstonia metallidurans (stra... [more]
CH10_RALEJ4.051e-1339.7810 kDa chaperonin OS=Ralstonia eutropha (strain JM... [more]
CH10_RALEH4.051e-1339.7810 kDa chaperonin OS=Ralstonia eutropha (strain AT... [more]
CH10_POLNS4.051e-1339.3610 kDa chaperonin OS=Polynucleobacter necessarius ... [more]
CH10_DELAS4.051e-1340.4310 kDa chaperonin OS=Delftia acidovorans (strain D... [more]
CH10_CUPTR4.051e-1339.7810 kDa chaperonin OS=Cupriavidus taiwanensis (stra... [more]
CH10_ALCBS4.051e-1342.5510 kDa chaperonin OS=Alcanivorax borkumensis (stra... [more]
CH10_THEYD5.290e-1341.9410 kDa chaperonin OS=Thermodesulfovibrio yellowsto... [more]
CH10_POLNA5.290e-1340.4310 kDa chaperonin OS=Polaromonas naphthalenivorans... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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