FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:120..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_WOLTR (10 kDa chaperonin OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            S+  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+GEG +     ++ ++VK G +V Y ++AGTE+E      ++++E D++ I++
Sbjct:    5 SLSVLDDSVL--IKPINEEKQGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERIALTVKAGDKVFYRQWAGTEIEHGSEKLIVMKESDILAIIK 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAAW (10 kDa chaperonin OS=Staphylococcus aureus (strain MW2) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAAU (10 kDa chaperonin OS=Staphylococcus aureus GN=groS PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAAT (10 kDa chaperonin OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAAS (10 kDa chaperonin OS=Staphylococcus aureus (strain MSSA476) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAAR (10 kDa chaperonin OS=Staphylococcus aureus (strain MRSA252) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAAN (10 kDa chaperonin OS=Staphylococcus aureus (strain N315) GN=groS PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAAM (10 kDa chaperonin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=groS PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAAE (10 kDa chaperonin OS=Staphylococcus aureus (strain Newman) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAAC (10 kDa chaperonin OS=Staphylococcus aureus (strain COL) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_WOLTR6.910e-1339.3610 kDa chaperonin OS=Wolbachia sp. subsp. Brugia m... [more]
CH10_STAAW6.910e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAU6.910e-1336.5610 kDa chaperonin OS=Staphylococcus aureus GN=groS... [more]
CH10_STAAT6.910e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAS6.910e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAR6.910e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAN6.910e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAM6.910e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAE6.910e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAC6.910e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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