FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PSEAB (10 kDa chaperonin OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 35/94 (37.23%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G   L++ E +++ +LE
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNAIKVDGEELLVMGESEILAVLE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PSEA8 (10 kDa chaperonin OS=Pseudomonas aeruginosa (strain LESB58) GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 35/94 (37.23%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G   L++ E +++ +LE
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNAIKVDGEELLVMGESEILAVLE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PSEA7 (10 kDa chaperonin OS=Pseudomonas aeruginosa (strain PA7) GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 35/94 (37.23%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G   L++ E +++ +LE
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNAIKVDGEELLVMGESEILAVLE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CHLPN (10 kDa chaperonin OS=Chlamydia pneumoniae GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            IKPLGDR+LVK +  E    GGI LP TA+ K    EV+ +G GK T   T L   V+ G  ++  KYAG E+  +   ++IL+  +++ +L+
Sbjct:   10 IKPLGDRILVKREEEEATARGGIILPDTAKKKQDRAEVLVLGTGKRTDDGTLLPFEVQVGDIILMDKYAGQEITIDDEEYVILQSSEIMAVLK 102          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CHLCV (10 kDa chaperonin OS=Chlamydophila caviae GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            IKPLGDR+LVK +  +    GGI LP TA+ K    EV+ +G GK       L   V  G  V+  KYAG EL  +G  ++I++E +V+ +L+
Sbjct:   10 IKPLGDRILVKREEEDSTARGGIILPDTAKKKQDRAEVLVLGTGKRDKDGNVLPFEVTVGDTVLIDKYAGQELTVDGEEYVIVQESEVMAVLK 102          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PSEST (10 kDa chaperonin OS=Pseudomonas stutzeri GN=groS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 34/94 (36.17%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PSEPW (10 kDa chaperonin OS=Pseudomonas putida (strain W619) GN=groS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 34/94 (36.17%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEVVAVGTGRILDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PSEPG (10 kDa chaperonin OS=Pseudomonas putida (strain GB-1) GN=groS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 34/94 (36.17%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEVVAVGTGRILENGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMAENEILAVIE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_LEPCP (10 kDa chaperonin OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=groS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            ++PL DRV+VK    E KT  GI +P  A  KP  GEV+AVG GK   K   + ++V  G +V++ KY+G  ++ +G   L++RE+D+  ++
Sbjct:    3 LRPLHDRVIVKRLEQETKTASGIVIPDNAAEKPDQGEVLAVGPGKRNDKGDFVALNVAVGDRVLFGKYSGQTVKVDGDELLVMREEDLFAVV 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_COLMA (10 kDa chaperonin OS=Colwellia maris GN=groS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELE-FNGANHLILREDDVVGILE 565
            SI+PL DRV+VK K  E K++GGI L  +A  K    EV+AVG G+ +   ++  + VK G QVI+S+  G + E  +G   LIL E D++ I+E
Sbjct:    2 SIRPLHDRVIVKRKDAESKSEGGIVLMGSATEKSTRAEVIAVGNGRILENGEVRPLDVKVGDQVIFSEGYGVKTEKIDGEEVLILSESDILAIVE 96          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_PSEAB1.702e-1137.2310 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH10_PSEA81.702e-1137.2310 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH10_PSEA71.702e-1137.2310 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH10_CHLPN1.702e-1139.7810 kDa chaperonin OS=Chlamydia pneumoniae GN=groS ... [more]
CH10_CHLCV1.702e-1140.8610 kDa chaperonin OS=Chlamydophila caviae GN=groS ... [more]
CH10_PSEST2.223e-1136.1710 kDa chaperonin OS=Pseudomonas stutzeri GN=groS ... [more]
CH10_PSEPW2.223e-1136.1710 kDa chaperonin OS=Pseudomonas putida (strain W6... [more]
CH10_PSEPG2.223e-1136.1710 kDa chaperonin OS=Pseudomonas putida (strain GB... [more]
CH10_LEPCP2.223e-1139.1310 kDa chaperonin OS=Leptothrix cholodnii (strain ... [more]
CH10_COLMA2.223e-1143.1610 kDa chaperonin OS=Colwellia maris GN=groS PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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