FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAHJ (10 kDa chaperonin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KPLG+RV+++ K  E+ T  GI L  +A+ K   G VVAVG G+ +    K+   VK G +V++ +YAG+E++     +LIL  +D++ I+E
Sbjct:    2 LKPLGNRVIIERKEQEQTTKSGIVLTDSAKEKSNEGIVVAVGTGRVLDNGEKVAPEVKEGDRVVFQEYAGSEVKRGDKTYLILNVEDLLAIIE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PSEU2 (10 kDa chaperonin OS=Pseudomonas syringae pv. syringae (strain B728a) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GE+VAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PSESM (10 kDa chaperonin OS=Pseudomonas syringae pv. tomato GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GE+VAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PSEPU (10 kDa chaperonin OS=Pseudomonas putida GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GE+VAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEIVAVGTGRILENGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMAENEILAVIE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PSE14 (10 kDa chaperonin OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GE+VAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVVE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_AZOVD (10 kDa chaperonin OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 34/94 (36.17%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E+++  ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRPLAVKVGDKVVFGPYSGSNTIKVDGEDLLVMGENEIFAVVE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PSEU5 (10 kDa chaperonin OS=Pseudomonas stutzeri (strain A1501) GN=groS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 34/94 (36.17%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDI-SVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++   +VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRAPAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVIE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_NEOSM (10 kDa chaperonin OS=Neorickettsia sennetsu (strain Miyayama) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTD-GGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +K L D+VL  I+  EEK   GGI++P +A+ KP  G VVAVG G K    T   + VK G  V+Y K+AG+E+E +G  +++++E D++ I E
Sbjct:    5 LKMLHDQVL--IRPHEEKDGAGGIYIPDSAKKKPTMGLVVAVGAGAKNSNGTFQPVCVKEGDIVLYRKWAGSEVEHDGVEYVVMKETDIIAIKE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_EHRSE (10 kDa chaperonin OS=Ehrlichia sennetsu GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTD-GGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +K L D+VL  I+  EEK   GGI++P +A+ KP  G VVAVG G K    T   + VK G  V+Y K+AG+E+E +G  +++++E D++ I E
Sbjct:    5 LKMLHDQVL--IRPHEEKDGAGGIYIPDSAKKKPTMGLVVAVGAGAKNSNGTFQPVCVKEGDIVLYRKWAGSEVEHDGVEYVVMKETDIIAIKE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAS1 (10 kDa chaperonin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 32/94 (34.04%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILET 568
            +KPLG+RV+++    E+ T  GI L  +A+ K   G ++AVG G+ +   +++   V  G +V++ +YAGTE++     +LI+ E+D++ I+E+
Sbjct:    2 LKPLGNRVIIQKSEQEQTTKSGIVLTDSAKEKSNEGTIIAVGAGRILKDGSRVAPEVNEGDKVVFQQYAGTEVKRGDETYLIVNEEDILAIIES 95          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_STAHJ2.903e-1138.7110 kDa chaperonin OS=Staphylococcus haemolyticus (... [more]
CH10_PSEU22.903e-1135.1110 kDa chaperonin OS=Pseudomonas syringae pv. syri... [more]
CH10_PSESM2.903e-1135.1110 kDa chaperonin OS=Pseudomonas syringae pv. toma... [more]
CH10_PSEPU2.903e-1135.1110 kDa chaperonin OS=Pseudomonas putida GN=groS PE... [more]
CH10_PSE142.903e-1135.1110 kDa chaperonin OS=Pseudomonas syringae pv. phas... [more]
CH10_AZOVD2.903e-1136.1710 kDa chaperonin OS=Azotobacter vinelandii (strai... [more]
CH10_PSEU53.791e-1136.1710 kDa chaperonin OS=Pseudomonas stutzeri (strain ... [more]
CH10_NEOSM4.952e-1142.5510 kDa chaperonin OS=Neorickettsia sennetsu (strai... [more]
CH10_EHRSE4.952e-1142.5510 kDa chaperonin OS=Ehrlichia sennetsu GN=groS PE... [more]
CH10_STAS16.467e-1134.0410 kDa chaperonin OS=Staphylococcus saprophyticus ... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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