FC931234
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 9.721e-73 Identity = 123/152 (80.92%), Postives = 131/152 (86.18%), Query Frame = 2 Query: 188 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINR 643 M K +KAEKKIAYDAKLC L+EEY QILV +DNVGSNQLQNIR+GLRGDSVVLMGKNTMMKR++RMHAEKTGN A+LNLIPLL GNVGLIFTKGDL GAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKIN+ Sbjct: 1 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152 HSP 2 Score: 52.373 bits (124), Expect = 9.721e-73 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1 Query: 640 QGTVEIITPVELIRKGDKVGSSEAALL 720 +GTVEIITPVELIRKGDKVGSSEAALL Sbjct: 152 KGTVEIITPVELIRKGDKVGSSEAALL 178
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 2.813e-72 Identity = 122/152 (80.26%), Postives = 133/152 (87.50%), Query Frame = 2 Query: 188 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINR 643 M VKA+KAEKKI YD+KLCQLL EY+QILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDL GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKIN+ Sbjct: 1 MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 152 HSP 2 Score: 51.2174 bits (121), Expect = 2.813e-72 Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 1 Query: 640 QGTVEIITPVELIRKGDKVGSSEAALL 720 +GTVEIITPVELI+KGDKVGSSEAALL Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAALL 178
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2) HSP 1 Score: 243.817 bits (621), Expect = 3.668e-72 Identity = 122/151 (80.79%), Postives = 133/151 (88.08%), Query Frame = 2 Query: 191 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINR 643 +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDL GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKIN+ Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151 HSP 2 Score: 49.6766 bits (117), Expect = 3.668e-72 Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 1 Query: 640 QGTVEIITPVELIRKGDKVGSSEAALL 720 +GTVEIITPVELI++GDKVGSSEAALL Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALL 177
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.061e-71 Identity = 121/151 (80.13%), Postives = 133/151 (88.08%), Query Frame = 2 Query: 191 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINR 643 +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E +GNTA LNL+PLLQGNVGLIFTKGDL GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKIN+ Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151 HSP 2 Score: 49.6766 bits (117), Expect = 1.061e-71 Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 1 Query: 640 QGTVEIITPVELIRKGDKVGSSEAALL 720 +GTVEIITPVELI++GDKVGSSEAALL Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALL 177
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 1.510e-70 Identity = 122/152 (80.26%), Postives = 129/152 (84.87%), Query Frame = 2 Query: 188 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINR 643 M KA+KAEKKI YD KLCQLL+EYTQILV ADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HAEKTGN AFLNLIPLL GNVGLIFTKG L GAPA VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKIN+ Sbjct: 1 MAPKATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152 HSP 2 Score: 51.2174 bits (121), Expect = 1.510e-70 Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 1 Query: 640 QGTVEIITPVELIRKGDKVGSSEAALL 720 +GTVEIITPVELI+KGDKVGSSEAALL Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAALL 178
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3) HSP 1 Score: 230.335 bits (586), Expect = 3.056e-68 Identity = 111/152 (73.03%), Postives = 129/152 (84.87%), Query Frame = 2 Query: 188 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINR 643 M +K +KAEKK+AYD KLCQLL+EYT++L+A ADNVGSNQLQ IR+GLRGDS+VLMGKNT+++R I++HA+ TGN FL L+PLL GNVGLIFTKGDL GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKIN+ Sbjct: 1 MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152 HSP 2 Score: 50.0618 bits (118), Expect = 3.056e-68 Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 1 Query: 640 QGTVEIITPVELIRKGDKVGSSEAALL 720 +GTVEIITPVELI+KGDKVGSSE+ALL Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALL 178
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3) HSP 1 Score: 221.861 bits (564), Expect = 3.038e-65 Identity = 111/152 (73.03%), Postives = 127/152 (83.55%), Query Frame = 2 Query: 188 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINR 643 M +K +KAEKKIAYD KLC LL+EYT++L+A ADNVGS QLQ+IRRGLRGDSVVLMGKNT+++R I+++AEKTGN F L+ LL GNVGLIFTKGDL GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKIN+ Sbjct: 1 MAIKRTKAEKKIAYDKKLCSLLDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNTLIRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152 HSP 2 Score: 48.521 bits (114), Expect = 3.038e-65 Identity = 23/27 (85.19%), Postives = 27/27 (100.00%), Query Frame = 1 Query: 640 QGTVEIITPVELIRKGDKVGSSEAALL 720 +GTVEIITPVELI+KG+KVGSSE+ALL Sbjct: 152 KGTVEIITPVELIKKGEKVGSSESALL 178
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 1.494e-64 Identity = 113/152 (74.34%), Postives = 124/152 (81.58%), Query Frame = 2 Query: 188 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINR 643 M VK +KAEKKIAYD KLCQLL+EY+Q+L+A+ADNVGSNQLQ IR GLRGDS+VLMGKNTMMKR+IR+HAE TGN N+ L NVGLIFTKGDL GAPAR GLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKIN+ Sbjct: 1 MAVKPTKAEKKIAYDQKLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNTMMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152 HSP 2 Score: 46.595 bits (109), Expect = 1.494e-64 Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 1 Query: 640 QGTVEIITPVELIRKGDKVGSSEAALL 720 +GTVEIIT VELI+KG+KVGSSEAALL Sbjct: 152 KGTVEIITAVELIKKGEKVGSSEAALL 178
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.855e-39 Identity = 75/156 (48.08%), Postives = 101/156 (64.74%), Query Frame = 2 Query: 191 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658 +V+ +KA K Y K+ +L +EY + + ADNVGS Q+QNIR LRG VVLMGKNTMM++ IR H E N L+P ++GNVG +FTKGDL APAR G +AP+ V++P NTGL P +TSFFQ L+IPTKI++ +++ Sbjct: 1 MVRENKAAWKAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMRKAIRGHLEN--NAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEI 154 HSP 2 Score: 36.965 bits (84), Expect = 1.855e-39 Identity = 16/27 (59.26%), Postives = 22/27 (81.48%), Query Frame = 1 Query: 640 QGTVEIITPVELIRKGDKVGSSEAALL 720 +GT+EII V +++ GDKVG+SEA LL Sbjct: 149 KGTIEIINDVPILKPGDKVGASEATLL 175
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 9.074e-39 Identity = 74/156 (47.44%), Postives = 102/156 (65.38%), Query Frame = 2 Query: 191 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658 +V+ +KA K Y K+ +L +E+ + + ADNVGS Q+QNIR LRG +VVLMGKNTMM++ IR H E N L+P ++GNVG +FTKGDL APAR G +AP+ V++P NTGL P +TSFFQ L+IPTKI++ +++ Sbjct: 1 MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHLEN--NPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEI 154 HSP 2 Score: 36.965 bits (84), Expect = 9.074e-39 Identity = 16/27 (59.26%), Postives = 22/27 (81.48%), Query Frame = 1 Query: 640 QGTVEIITPVELIRKGDKVGSSEAALL 720 +GT+EII V +++ GDKVG+SEA LL Sbjct: 149 KGTIEIINDVPILKPGDKVGASEATLL 175 The following BLAST results are available for this feature:
BLAST of FC931234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931234 ID=FC931234; Name=FC931234; organism=Citrus clementina; type=EST; length=720bpback to top |