FC931234

Overview
NameFC931234
Unique NameFC931234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig369 contig Ccv1_Contig369:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.278e-37
Identity = 74/154 (48.05%), Postives = 96/154 (62.34%), Query Frame = 2 
Query:  197 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N+A   L+P ++GNVG +FTK DL             A AR G +AP DV VP  NTGL P +TSFFQ L I TKI+R  +++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEI 154

HSP 2 Score: 39.2762 bits (90), Expect = 1.278e-37
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI++ V+LI+ GDKVG+SEA LL
Sbjct:  149 RGTIEILSDVQLIKTGDKVGASEATLL 175
[Close]
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.665e-37
Identity = 75/154 (48.70%), Postives = 95/154 (61.69%), Query Frame = 2 
Query:  197 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            +  +A  K  Y  K+ QLL++Y +  V  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP DV VP  NTGL P +TSFFQ L I TKI+R  +++
Sbjct:    3 REDRATWKSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEI 154

HSP 2 Score: 39.2762 bits (90), Expect = 1.665e-37
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI++ V+LI+ GDKVG+SEA LL
Sbjct:  149 RGTIEILSDVQLIKTGDKVGASEATLL 175
[Close]
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 6.246e-37
Identity = 73/154 (47.40%), Postives = 95/154 (61.69%), Query Frame = 2 
Query:  197 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI+R  +++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEI 154

HSP 2 Score: 39.2762 bits (90), Expect = 6.246e-37
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI++ V+LI+ GDKVG+SEA LL
Sbjct:  149 RGTIEILSDVQLIKTGDKVGASEATLL 175
[Close]
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 6.246e-37
Identity = 73/154 (47.40%), Postives = 95/154 (61.69%), Query Frame = 2 
Query:  197 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI+R  +++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEI 154

HSP 2 Score: 39.2762 bits (90), Expect = 6.246e-37
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI++ V+LI+ GDKVG+SEA LL
Sbjct:  149 RGTIEILSDVQLIKTGDKVGASEATLL 175
[Close]
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_RAT (60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 6.246e-37
Identity = 73/154 (47.40%), Postives = 95/154 (61.69%), Query Frame = 2 
Query:  197 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI+R  +++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEI 154

HSP 2 Score: 39.2762 bits (90), Expect = 6.246e-37
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI++ V+LI+ GDKVG+SEA LL
Sbjct:  149 RGTIEILSDVQLIKTGDKVGASEATLL 175
[Close]
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_MOUSE (60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 6.246e-37
Identity = 73/154 (47.40%), Postives = 95/154 (61.69%), Query Frame = 2 
Query:  197 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI+R  +++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEI 154

HSP 2 Score: 39.2762 bits (90), Expect = 6.246e-37
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI++ V+LI+ GDKVG+SEA LL
Sbjct:  149 RGTIEILSDVQLIKTGDKVGASEATLL 175
[Close]
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.246e-37
Identity = 73/154 (47.40%), Postives = 95/154 (61.69%), Query Frame = 2 
Query:  197 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI+R  +++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEI 154

HSP 2 Score: 39.2762 bits (90), Expect = 6.246e-37
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI++ V+LI+ GDKVG+SEA LL
Sbjct:  149 RGTIEILSDVQLIKTGDKVGASEATLL 175
[Close]
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 8.137e-37
Identity = 72/154 (46.75%), Postives = 94/154 (61.04%), Query Frame = 2 
Query:  197 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            +  +A  K  Y  K+ QLL +Y +  +  ADNVGS Q+Q IR  LRG ++VLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI+R  +++
Sbjct:    3 REDRATWKSNYFLKIIQLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEI 154

HSP 2 Score: 40.4318 bits (93), Expect = 8.137e-37
Identity = 18/27 (66.67%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI++ V+LIR GDKVG+SEA LL
Sbjct:  149 RGTIEILSDVQLIRPGDKVGASEATLL 175
[Close]
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 1.381e-36
Identity = 69/156 (44.23%), Postives = 97/156 (62.18%), Query Frame = 2 
Query:  191 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            +V+  ++  K  Y  KL +L EEY + L+   DNVGS Q+Q IR+ +RG + +LMGKNTM+++ +R H  K  N +   L+P +  NVG +FTK DL            GAPA+ G +AP DV +PP NTG+ P +TSFFQ L IPTKI R  +++
Sbjct:    1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGK--NPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEI 154

HSP 2 Score: 39.2762 bits (90), Expect = 1.381e-36
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI+  V LI++GDKVG+SE+ALL
Sbjct:  149 RGTIEILNDVHLIKEGDKVGASESALL 175
[Close]
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.343e-36
Identity = 72/154 (46.75%), Postives = 95/154 (61.69%), Query Frame = 2 
Query:  197 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            +  +A  K  Y  K+ QLL+++ +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI+R  +++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEI 154

HSP 2 Score: 39.2762 bits (90), Expect = 2.343e-36
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI++ V+LI+ GDKVG+SEA LL
Sbjct:  149 RGTIEILSDVQLIKPGDKVGASEATLL 175
The following BLAST results are available for this feature:
BLAST of FC931234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RLA0_RANSY1.278e-3748.0560S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]
RLA0_CHICK1.665e-3748.7060S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_PIG6.246e-3747.4060S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]
RLA0_BOVIN6.246e-3747.4060S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_RAT6.246e-3747.4060S acidic ribosomal protein P0 OS=Rattus norvegic... [more]
RLA0_MOUSE6.246e-3747.4060S acidic ribosomal protein P0 OS=Mus musculus GN... [more]
RLA0_HUMAN6.246e-3747.4060S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_ICTPU8.137e-3746.7560S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_CAEEL1.381e-3644.2360S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0_DANRE2.343e-3646.7560S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34103A01EF PostHarvP1 Citrus clementina cDNA clone C34103A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931234 ID=FC931234; Name=FC931234; organism=Citrus clementina; type=EST; length=720bp
GAGCCTCCCAGATAATACTAGGGTTTTTCTTGTACACTTCTTTCACTCTC
TTTGTATCTCGTTGAGGTTAAAGAGACGGCAACTCCGCTGCTGTCCGCCT
TGGCAAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGTATAAATTTACAAC
TTTTTACCACCAACAAAAGTAGAACCAAATCCACGAAATGGTAGTGAAAG
CATCGAAGGCCGAGAAGAAGATCGCGTACGACGCGAAGCTATGCCAGTTG
CTGGAAGAGTACACCCAAATCTTGGTGGCGGCCGCCGACAACGTGGGGTC
CAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTCCGTTGTGC
TAATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGCACGCTGAG
AAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAA
TGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGG
TTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCA
ATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGAC
CTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAGGGTACTGT
TGAAATTATCACACCTGTGGAGCTTATCAGGAAGGGTGACAAGGTGGGAT
CTTCTGAGGCAGCCCTGCTT
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