FC931234

Overview
NameFC931234
Unique NameFC931234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig369 contig Ccv1_Contig369:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.052e-36
Identity = 73/154 (47.40%), Postives = 93/154 (60.39%), Query Frame = 2
Query:  197 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG  VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI+R  +++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEI 154          

HSP 2 Score: 39.2762 bits (90), Expect = 3.052e-36
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI++ V+LI+ GDKVG+SEA LL
Sbjct:  149 RGTIEILSDVQLIKTGDKVGASEATLL 175          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.531e-35
Identity = 68/152 (44.74%), Postives = 95/152 (62.50%), Query Frame = 2
Query:  206 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKLS 661
            K+  K  Y  KL  LLE+Y  I + + DNV S Q+  IR+ LRG++VVLMGKNTM++R ++     T    +  L+P ++GNVG +FT GDL             APAR G +AP DV +P GNTG++P +TSFFQ L +PTKI R  ++++
Sbjct:    4 KSANKAGYFDKLKGLLEDYRSIFIVSVDNVSSQQMHEIRQSLRGEAVVLMGKNTMVRRALKTFVADTPE--YERLLPFVKGNVGFVFTNGDLKEVRDKILANKVAAPARAGAIAPADVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEIT 153          

HSP 2 Score: 33.113 bits (74), Expect = 2.531e-35
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI T ++L+  G KVG SEA LL
Sbjct:  147 RGTIEITTDLKLVEAGAKVGPSEATLL 173          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.236e-34
Identity = 68/152 (44.74%), Postives = 93/152 (61.18%), Query Frame = 2
Query:  206 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKLS 661
            K+  K  Y  KL  LLEEY  I + + DNV S Q+  IR+ LR   VVLMGKNTM++R ++       +  +  L+P ++GNVG +FT GDL             APAR G VAP+DV +P GNTG++P +TSFFQ L +PTKI R  ++++
Sbjct:    4 KSANKAGYFDKLKGLLEEYKSIFIVSVDNVSSQQMHEIRQALRDQGVVLMGKNTMVRRALKTFL--VDSPEYERLLPFVKGNVGFVFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEIT 153          

HSP 2 Score: 33.113 bits (74), Expect = 1.236e-34
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI T ++L+  G KVG SEA LL
Sbjct:  147 RGTIEITTDLKLVEAGAKVGPSEATLL 173          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.626e-31
Identity = 67/149 (44.97%), Postives = 88/149 (59.06%), Query Frame = 2
Query:  212 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR       +  F  L+P ++G VG +FT   L             APAR G VAP D+ V   NTG++P +TSFFQ L +PTKI R  +++
Sbjct:    6 EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPD--FEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEI 152          

HSP 2 Score: 34.2686 bits (77), Expect = 2.626e-31
Identity = 14/27 (51.85%), Postives = 23/27 (85.19%), Query Frame = 1
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GT+EI++ V+++  G+KVG SEA+LL
Sbjct:  147 RGTIEIVSDVKVVDAGNKVGQSEASLL 173          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 67/171 (39.18%), Postives = 104/171 (60.82%), Query Frame = 2
Query:  191 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGA-PARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKLS---HLWSLSGRVT 691
            + K SK +KK  Y  KL  L+++Y++IL+   DNVGSNQ+ ++R+ LRG + +LMGKNT ++  ++ + +         L+PL++ N+G +F K DL             + PAR+G++APIDV +PPG TG+DPS TSF + L I TKI +  +++    HL     +VT
Sbjct:    1 MAKLSKQQKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIRTALKKNLQAVPQIE--KLLPLVKLNMGFVFCKDDLSEIRNIILDNKSSSHPARLGVIAPIDVFIPPGPTGMDPSHTSFLESLGISTKIVKGQIEIQEHVHLIKQGEKVT 169          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 68/166 (40.96%), Postives = 94/166 (56.63%), Query Frame = 2
Query:  200 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKLS---HLWSLSGRV 688
            A   E K  Y  KL  L E+Y  + V   DNV S Q+  +R+ LRG + ++MGKNTM++R +R             L+P+++GNVG +FT  DL             APAR   +AP+DV VP GNTG++P +TSFFQ L IPTKI R  ++++   HL S   +V
Sbjct:    2 AISKESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELE--RLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKV 165          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.008e-26
Identity = 61/145 (42.07%), Postives = 87/145 (60.00%), Query Frame = 2
Query:  209 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINR 643
            +++K  +  K  +L   Y +++VA AD VGS+QLQ IR+ +RG   VLMGK TM+++ IR  A+       LN    L+ N  +IF K ++            GAPA+ G+ AP DV++P G TG++P+QTSF Q L I TKINR
Sbjct:    6 SKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTY--LKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINR 148          

HSP 2 Score: 31.9574 bits (71), Expect = 1.008e-26
Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +G ++I+  V +I+ G KVG+SEA LL
Sbjct:  148 RGQIDIVNEVHIIKTGQKVGASEATLL 174          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.080e-25
Identity = 62/152 (40.79%), Postives = 85/152 (55.92%), Query Frame = 2
Query:  203 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI-------PLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKI 637
            S +E K  Y+ +    L +Y ++L    DNV S Q+ ++RR LRG   ++MGK T+ K+ +   AE    +A+  L+        LL GN  LIFT  ++             APARVG +AP DV+VP GNTG++P  TSFFQ LNI TKI
Sbjct:    3 SVSEAKREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVERRAEDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVGAIAPCDVIVPAGNTGMEPKATSFFQALNIATKI 154          

HSP 2 Score: 27.7202 bits (60), Expect = 1.080e-25
Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +GTVEI++  +++  GD+V +S A LL
Sbjct:  156 KGTVEIVSDKKVLSVGDRVDNSTATLL 182          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 64/162 (39.51%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  209 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKLSHLWSLSGRVTR 694
            A K+  Y  +L QL+ E+ ++LV +AD+VGS QL  IR  LRG + VLMGKNT ++  +R   ++        L+PL++ NVG IF + D              APA+ G+ AP DV +P G TG+DP  T FFQ L I TKI +  +++     L  R  R
Sbjct:    6 AAKRREYFPRLLQLVLEHPRVLVVSADHVGSKQLAGIRVALRGQATVLMGKNTKIRTALRQQLQQ--QPQLQALLPLVRLNVGFIFCRADPAAVRAVVQQHKVPAPAKQGVTAPTDVFIPAGPTGMDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGER 165          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.623e-23
Identity = 58/154 (37.66%), Postives = 84/154 (54.55%), Query Frame = 2
Query:  218 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            K  Y+ +L   L +Y+ +L    DNV S Q+ ++RRG RG +  +MGK T+  + +   A+    +              LL GN GLIFT   +             APARVG + P DVVVP G+TG++P+QTSFFQ LNI TKI + ++++
Sbjct:    8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRGCRGKAEFIMGKKTLQAKIVEKRAQAKDASPEAKPFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDGHRVKAPARVGAI-PCDVVVPAGSTGMEPTQTSFFQALNIATKIAKGMVEI 160          

HSP 2 Score: 28.1054 bits (61), Expect = 4.623e-23
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +G VEI+T  +++  GDKV +S A LL
Sbjct:  155 KGMVEIVTEKKVLSVGDKVDNSTATLL 181          
The following BLAST results are available for this feature:
BLAST of FC931234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RLA0L_HUMAN3.052e-3647.4060S acidic ribosomal protein P0-like OS=Homo sapie... [more]
RLA0_NEUCR2.531e-3544.7460S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_PODAN1.236e-3444.7460S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_YEAST2.626e-3144.9760S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_PLAF84.624e-2839.1860S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_SCHPO6.039e-2840.9660S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_DICDI1.008e-2642.0760S acidic ribosomal protein P0 OS=Dictyostelium d... [more]
RLA0_TRYCR1.080e-2540.7960S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_EIMTE6.910e-2439.5160S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_LEICH4.623e-2337.6660S acidic ribosomal protein P0 OS=Leishmania chag... [more]

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Properties
Property NameValue
Genbank descriptionC34103A01EF PostHarvP1 Citrus clementina cDNA clone C34103A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931234 ID=FC931234; Name=FC931234; organism=Citrus clementina; type=EST; length=720bp
GAGCCTCCCAGATAATACTAGGGTTTTTCTTGTACACTTCTTTCACTCTC
TTTGTATCTCGTTGAGGTTAAAGAGACGGCAACTCCGCTGCTGTCCGCCT
TGGCAAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGTATAAATTTACAAC
TTTTTACCACCAACAAAAGTAGAACCAAATCCACGAAATGGTAGTGAAAG
CATCGAAGGCCGAGAAGAAGATCGCGTACGACGCGAAGCTATGCCAGTTG
CTGGAAGAGTACACCCAAATCTTGGTGGCGGCCGCCGACAACGTGGGGTC
CAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTCCGTTGTGC
TAATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGCACGCTGAG
AAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAA
TGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGG
TTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCA
ATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGAC
CTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAGGGTACTGT
TGAAATTATCACACCTGTGGAGCTTATCAGGAAGGGTGACAAGGTGGGAT
CTTCTGAGGCAGCCCTGCTT
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