FC931239

Overview
NameFC931239
Unique NameFC931239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9817 contig Ccv1_Contig9817:509..1210. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_HUMAN (S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens GN=AMD1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 73/213 (34.27%), Postives = 115/213 (53.99%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI--XXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P
Sbjct:    7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIP 214          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM1_MOUSE (S-adenosylmethionine decarboxylase proenzyme 1 OS=Mus musculus GN=Amd1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 73/213 (34.27%), Postives = 114/213 (53.52%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI--XXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIP 214          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM2_MUSSP (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus spretus GN=Amd2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 73/213 (34.27%), Postives = 114/213 (53.52%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI--XXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNVIF----PNGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIP 214          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM2_MOUSE (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus musculus GN=Amd2 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 73/213 (34.27%), Postives = 114/213 (53.52%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI--XXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSIFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNVIF----PNGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIP 214          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_SCHPO (S-adenosylmethionine decarboxylase proenzyme OS=Schizosaccharomyces pombe GN=spe2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 71/200 (35.50%), Postives = 112/200 (56.00%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGR----GLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVR--YTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY-----TLEMCMTGLDRKRASVFY 606
            FEG EK LE+ F  P       G     GL+++S++  D++L  A+C ++S +++E +D+Y+LSESS+FV+ +K+I+KTCGTT LL S+P +           R +R  Y+R +F++   Q  PH S+ EEV  L      F     ++V+G P N   WH++S  A+  S +         TLE+ MT +  +R+  FY
Sbjct:   20 FEGPEKLLELWFSAPIKTNLSAGEKANLGLKAVSRNDWDDMLAQAQCKVLSVVNSEEIDAYLLSESSMFVFAHKIILKTCGTTTLLASLPRLLEIASSVGFD-RPLRIFYSRKNFLYPERQLAPHTSWEEEVRYLQ----LFFPSGCSYVVG-PTNKNHWHLFSDLADDYSLLEDSLDPEDETLEVLMTDMSPERSLQFY 213          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_DROME (S-adenosylmethionine decarboxylase proenzyme OS=Drosophila melanogaster GN=SamDC PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 75/225 (33.33%), Postives = 113/225 (50.22%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSI-PAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYS------------ASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPNL 675
            FEG EK LE+ F E    +  G   LR++S+   + +L    C I+S+  N+ +D++VLSESS+FV   + I+KTCGTT  L  +   +          V  + Y+R +F    AQ  PH+ F+EEV  LD  F     +  ++ +GS  N + W++Y+             S E     +P  T+E+ M  LD +  S+FYK   + A   T  SGI  ILP +
Sbjct:    9 FEGVEKLLEIWFEE----SSNGDDDLRNISRSDWENVLSNVNCQIISTSKNDIIDAFVLSESSMFVSKRRWILKTCGTTTPLKCLGQLLKLAEANGYNVVADLFYSRKNFTRPEAQITPHQGFTEEVTYLDSIF----PNGRSYCLGSM-NLECWYLYTFSRSDIKITPQLISDEKNVDSDPDQTIEILMQDLDPETMSIFYKNKFNDANGATVKSGIDTILPTM 224          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_XENLA (S-adenosylmethionine decarboxylase proenzyme OS=Xenopus laevis GN=amd1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 69/212 (32.55%), Postives = 111/212 (52.36%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI--XXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKIL 666
            FEG EK LE+ F +    A  G   LR + + + D++L+   C I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +            +++  Y+R +F+    Q +PHR+F EEV  L+  F     +  A+ MG   N+  W++Y+        ++ P  TLE+ M+ LD +    FY     +A  +T  SGIR ++
Sbjct:   11 FEGTEKLLELWFSQQD--ASKGSGDLRDIPRFEWDKLLENVHCLIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLQALVPLLELAREYCGFDGIQNFFYSRKNFMKPNHQEYPHRNFHEEVEFLNQIF----PNGAAYCMGR-INSDCWYLYTLDIPDEYVISQPDQTLEILMSELDPEVMDQFYMKEGVTANDVTRVSGIRDLI 215          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_YEAST (S-adenosylmethionine decarboxylase proenzyme OS=Saccharomyces cerevisiae GN=SPE2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 66/222 (29.73%), Postives = 106/222 (47.75%), Query Frame = 1
Query:   28 SAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXV-----------RSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY------TLEMCMTGLDRKRASVFYKTNESSAAMMTE 642
            S   FEG EK LE+ FF P   +    + LR++   +  EILK  +C ++S    + LD+++LSESSLFV+ +K+ +KTCGTT  L  +  +                        V Y+R  F+F   Q   H+++++EV  L+    KF  +  ++ +G  D +  W++Y    +  +     Y      T E+ MT LD + AS F    E+S   + E
Sbjct:   24 STDAFEGPEKLLEIWFF-PHKKSITTEKTLRNIGMDRWIEILKLVKCEVLSMKKTKELDAFLLSESSLFVFDHKLTMKTCGTTTTLFCLEKLFQIVEQELSWAFRTTQGGKYKPFKVFYSRRCFLFPCKQAAIHQNWADEVDYLN----KFFDNGKSYSVGRNDKSNHWNLYVTETDRSTPKGKEYIEDDDETFEVLMTELDPECASKFVCGPEASTTALVE 240          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_LEIIN (S-adenosylmethionine decarboxylase proenzyme OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 75/215 (34.88%), Postives = 103/215 (47.91%), Query Frame = 1
Query:   22 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHF--GK---FG-MDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKR-----ASVFYKTNESSAAM 633
            P     FEG EKRLEV         +    GLRSL       ++      IVS  SNEY++SYVL+ESSLFV   ++I+ TCGTT LL SIP I          +  V +   ++ F   Q  PH S ++E A L  HF  GK   FG +DS  + +   D+  R      S+E  +       L M M GLD+++     +  F  T+  +AA+
Sbjct:   36 PEQGFSFEGPEKRLEVIL---RCTLETHVDGLRSLDDSVWSGVVGSLNAQIVSRESNEYINSYVLTESSLFVMKNRIILITCGTTTLLNSIPNILEAISAVRGELEWVSFMHKNYSFPWMQKGPHTSLADEFATLKQHFPTGKPYIFGPVDSDHYFLFCYDDIIR----PCSSEDDTQ------LSMTMYGLDKEQTKHWFSDRFISTSAETAAI 237          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_LEIDO (S-adenosylmethionine decarboxylase proenzyme OS=Leishmania donovani PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 75/215 (34.88%), Postives = 103/215 (47.91%), Query Frame = 1
Query:   22 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHF--GK---FG-MDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKR-----ASVFYKTNESSAAM 633
            P     FEG EKRLEV         +    GLRSL       ++      IVS  SNEY++SYVL+ESSLFV   ++I+ TCGTT LL SIP I          +  V +   ++ F   Q  PH S ++E A L  HF  GK   FG +DS  + +   D+  R      S+E  +       L M M GLD+++     +  F  T+  +AA+
Sbjct:   26 PEQGFSFEGPEKRLEVIL---RCTLETHVDGLRSLDDSVWSGVVGSLNAQIVSRESNEYINSYVLTESSLFVMKNRIILITCGTTTLLNSIPNILEAISAVRGELEWVSFMHKNYSFPWMQKGPHTSLADEFATLKQHFPTGKPYIFGPVDSDHYFLFCYDDIIR----PCSSEDDTQ------LSMTMYGLDKEQTKHWFSDRFISTSAETAAI 227          
The following BLAST results are available for this feature:
BLAST of FC931239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCAM_HUMAN5.101e-2434.27S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM1_MOUSE5.101e-2434.27S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM2_MUSSP1.136e-2334.27S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_MOUSE1.136e-2334.27S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_SCHPO1.256e-2235.50S-adenosylmethionine decarboxylase proenzyme OS=Sc... [more]
DCAM_DROME2.143e-2233.33S-adenosylmethionine decarboxylase proenzyme OS=Dr... [more]
DCAM_XENLA5.836e-2032.55S-adenosylmethionine decarboxylase proenzyme OS=Xe... [more]
DCAM_YEAST6.039e-1729.73S-adenosylmethionine decarboxylase proenzyme OS=Sa... [more]
DCAM_LEIIN1.345e-1634.88S-adenosylmethionine decarboxylase proenzyme OS=Le... [more]
DCAM_LEIDO1.345e-1634.88S-adenosylmethionine decarboxylase proenzyme OS=Le... [more]

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Properties
Property NameValue
Genbank descriptionC34103A06EF PostHarvP1 Citrus clementina cDNA clone C34103A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931239 ID=FC931239; Name=FC931239; organism=Citrus clementina; type=EST; length=701bp
CTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGAAGGTTA
TGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTGATC
CTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAAATA
CTGAAACCTGCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAATATCT
TGATTCATATGTCCTCTCAGAATCAAGCCTCTTTGTGTACCCTTACAAAG
TTATTATCAAAACTTGTGGGACTACCAAGCTGCTTCTTTCAATCCCTGCC
ATCCTCAAGTTATCTGAGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATA
CACTCGCGGAAGCTTCATATTTGCTGGGGCTCAGCCATTTCCACACCGTA
GCTTCTCTGAGGAAGTAGCTGTCCTTGATGGACACTTTGGCAAGTTTGGT
ATGGACAGCACAGCTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATG
GCATGTTTACTCTGCTTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTT
ACACTCTAGAGATGTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTC
TTCTACAAAACTAATGAAAGCTCAGCGGCTATGATGACCGAGGACTCTGG
CATCAGAAAGATTCTTCCAAATCTGAGATTTGTGATTTTGAGTTTGACCC
T
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