FC931243

Overview
NameFC931243
Unique NameFC931243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   59 VEDPRDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 307
            V+  +  +  A   + C AC+KTVY +++L AD  ++H +CF C HC   L L +Y +  G  YCKPHF QLFK  G+ D+ F
Sbjct:   25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGF 107          

HSP 2 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 2
Query:  353 VTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNF---------SQLDNHEQVEAVTENA 637
            V  S+  S+ A  ++ C AC+KTVYP+E++  D   +H +CF C H    +S  +Y A     YC+ H  QLF  KGN+          +L  H++V++ T+ A
Sbjct:   25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 128          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   59 VEDPRDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 307
            V+  +  +  A   + C AC+KTVY +++L AD  ++H +CF C HC   L L +Y +  G  YCKPHF QLFK  G+ D+ F
Sbjct:   24 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 106          

HSP 2 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 38/119 (31.93%), Postives = 59/119 (49.58%), Query Frame = 2
Query:  308 EGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNF---------SQLDNHEQVEAVTENA 637
            + TP        +  V  S+  S+ A  ++ C AC+KTVYP+E++  D   +H +CF C H    +S  +Y A     YC+ H  QLF  KGN+          +L  H++V+  T+ A
Sbjct:    9 QATPSHDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA 127          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   59 VEDPRDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 307
            V+  +  +  A   + C AC+KTVY +++L AD  ++H +CF C HC   L L +Y +  G  YCKPHF QLFK  G+ D+ F
Sbjct:   25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 107          

HSP 2 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 37/108 (34.26%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  341 SADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNF---------SQLDNHEQVEAVTENA 637
            S+  V  S+  S+ A  ++ C AC+KTVYP+E++  D   +H +CF C H    +S  +Y A     YC+ H  QLF  KGN+          +L  H++V+  T+ A
Sbjct:   21 SSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA 128          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP1_BOVIN (Cysteine and glycine-rich protein 1 OS=Bos taurus GN=CSRP1 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 52/178 (29.21%), Postives = 83/178 (46.63%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG----------SLDKSFEGTPKTVRVERS-ADQVTNSRVSSMFA---GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G  +KC  C+KTVY  +++  +   +HK+CF C  CK  L  +        +YCK  + + +   G          S+DK   G    +R E +   + T +  +S FA   G  ++C  C + VY  EKV   G S+HK+CFRC   G  +  +     +  +YC+  + + F  KG
Sbjct:    5 GGGKKCGVCQKTVYFAEEVQCEGSSFHKSCFLCLVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSMDK---GESLGIRHEEAPGHRPTTNPNTSKFAQKVGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP1_MOUSE (Cysteine and glycine-rich protein 1 OS=Mus musculus GN=Csrp1 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.677e-16
Identity = 50/175 (28.57%), Postives = 79/175 (45.14%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVR--------VERSADQVTNSRVSSMFA---GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G  +KC  C+KTVY  +++  +   +HK+CF C  CK  L  +        +YCK  + + +   G       GT  T +         E    + T +  +S FA   G  ++C  C + VY  EKV   G S+HK+CFRC   G  +  +     +  +YC+  + + F  KG
Sbjct:    5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 2
Query:   89 AGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 307
            A   + C  C+KTVY +++L A+ +V+H +CFRC +C   L L  Y S  G +YCKPHF+QLFK  G+ D+ F
Sbjct:  382 APAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 454          

HSP 2 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  341 SADQVTNSRVSSMF-AGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNFSQLDNHEQ 613
            S  + + S+ +  F A  ++ CV C+KTVYP+E++  +   +H +CFRC++    +S   Y +   R+YC+ H NQLF  KGN+ +   H+Q
Sbjct:  367 SLPESSPSKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHKQ 458          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP1_RAT (Cysteine and glycine-rich protein 1 OS=Rattus norvegicus GN=Csrp1 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 51/178 (28.65%), Postives = 83/178 (46.63%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG----------SLDKSFEGTPKTVRVERS-ADQVTNSRVSSMFA---GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G  +KC  C+KTVY  +++  +   +HK+CF C  CK  L  +        +YCK  + + +   G          S+DK   G    ++ E +   + T +  +S FA   G  ++C  C + VY  EKV   G S+HK+CFRC   G  +  +     +  +YC+  + + F  KG
Sbjct:    5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSMDK---GESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   59 VEDPRDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 307
            V+  +  +  A   + C AC+KTVY +++L AD  ++H +CF C HC   L L +Y +  G  YC+PHF QLFK  G+ D+ F
Sbjct:   25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGF 107          

HSP 2 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 2
Query:  353 VTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNF---------SQLDNHEQVEAVTENA 637
            V  S+  S+ A  ++ C AC+KTVYP+E++  D   +H +CF C H    +S  +Y A     YCR H  QLF  KGN+          +L  H++V++ T+ A
Sbjct:   25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 128          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP2_HUMAN (Cysteine and glycine-rich protein 2 OS=Homo sapiens GN=CSRP2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 47/176 (26.70%), Postives = 77/176 (43.75%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGT------------PKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G   KC AC +TVY  +++  D + +H+ CF C  C+  L  +     +  +YCK  + + +   G       GT            P++V+  R       S+ +  + G + KC  C  +VY  EK+   G  +HK CFRC   G  +  +     E  +YC+  + + F  KG
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAE-KCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP2_COTJA (Cysteine and glycine-rich protein 2 OS=Coturnix coturnix japonica GN=CSRP2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 52/176 (29.55%), Postives = 78/176 (44.32%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVER---------SADQVTNSRVSSMFA---GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G   KC AC +TVY  +++  D + +H+ CF C  C+  L  +     +  +YCK  + + +   G       GT    R ER         S  + T +  +S FA   G  +KC  C  +VY  EKV   G  +HK CFRC   G  +  +     E  +YC+  + + F  KG
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGAEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 180          
The following BLAST results are available for this feature:
BLAST of FC931243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
LIMD2_RAT5.112e-1642.17LIM domain-containing protein 2 OS=Rattus norvegic... [more]
LIMD2_HUMAN5.112e-1642.17LIM domain-containing protein 2 OS=Homo sapiens GN... [more]
LIMD2_BOVIN5.112e-1642.17LIM domain-containing protein 2 OS=Bos taurus GN=L... [more]
CSRP1_BOVIN5.112e-1629.21Cysteine and glycine-rich protein 1 OS=Bos taurus ... [more]
CSRP1_MOUSE6.677e-1628.57Cysteine and glycine-rich protein 1 OS=Mus musculu... [more]
LIMA1_MOUSE8.720e-1646.58LIM domain and actin-binding protein 1 OS=Mus musc... [more]
CSRP1_RAT8.720e-1628.65Cysteine and glycine-rich protein 1 OS=Rattus norv... [more]
LIMD2_MOUSE1.139e-1540.96LIM domain-containing protein 2 OS=Mus musculus GN... [more]
CSRP2_HUMAN1.139e-1526.70Cysteine and glycine-rich protein 2 OS=Homo sapien... [more]
CSRP2_COTJA1.139e-1529.55Cysteine and glycine-rich protein 2 OS=Coturnix co... [more]

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Properties
Property NameValue
Genbank descriptionC34103A10EF PostHarvP1 Citrus clementina cDNA clone C34103A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931243 ID=FC931243; Name=FC931243; organism=Citrus clementina; type=EST; length=702bp
GATCGAAGACTTTGTAAGTGTTCGAGGAAGTCTTAGCTTTCTTTGGTATT
TGTTGTGTGTGGAAGATCCAAGAGATATGGCGAGTTTTGCAGGGACAACA
CAGAAGTGTAAGGCGTGTGAGAAGACGGTATACTTGGTTGATCAACTTAC
TGCTGATAACAAAGTCTATCACAAGGCTTGTTTTAGATGCCACCATTGCA
AGGGCACCCTCAAGCTGAGCAACTATTGCTCCTTTGAGGGAGTTTTATAT
TGCAAGCCTCACTTTGATCAGCTGTTTAAGATGACTGGCAGCTTGGATAA
AAGTTTTGAAGGTACTCCAAAAACTGTTAGAGTTGAGAGATCTGCTGATC
AGGTCACAAATAGCAGAGTTTCAAGTATGTTTGCTGGAACTCAAGATAAA
TGCGTTGCTTGCAAGAAGACTGTTTACCCAATTGAAAAGGTGGCAGTTGA
TGGTACATCATACCATAAAGCCTGTTTCAGGTGCACCCATGGAGGTTGTG
TAATCAGCCCATCAAACTATGTGGCGCATGAGCATCGTCTCTACTGTAGG
CATCACCACAATCAGCTTTTCACGCAGAAGGGTAACTTCAGCCAACTTGA
CAACCATGAACAAGTTGAAGCGGTGACTGAGAACGCAACAGCTTAGTGAT
ACTGTGAAATTTTCTTCTGTTAATGTGACAATGTGTGATTGCTTCGGTTG
TG
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