FC931243
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16 Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 2 Query: 59 VEDPRDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 307 V+ + + A + C AC+KTVY +++L AD ++H +CF C HC L L +Y + G YCKPHF QLFK G+ D+ F Sbjct: 25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGF 107 HSP 2 Score: 73.1738 bits (178), Expect = 1.539e-12 Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 2 Query: 353 VTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNF---------SQLDNHEQVEAVTENA 637 V S+ S+ A ++ C AC+KTVYP+E++ D +H +CF C H +S +Y A YC+ H QLF KGN+ +L H++V++ T+ A Sbjct: 25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 128
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16 Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 2 Query: 59 VEDPRDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 307 V+ + + A + C AC+KTVY +++L AD ++H +CF C HC L L +Y + G YCKPHF QLFK G+ D+ F Sbjct: 24 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 106 HSP 2 Score: 72.7886 bits (177), Expect = 2.010e-12 Identity = 38/119 (31.93%), Postives = 59/119 (49.58%), Query Frame = 2 Query: 308 EGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNF---------SQLDNHEQVEAVTENA 637 + TP + V S+ S+ A ++ C AC+KTVYP+E++ D +H +CF C H +S +Y A YC+ H QLF KGN+ +L H++V+ T+ A Sbjct: 9 QATPSHDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA 127
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16 Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 2 Query: 59 VEDPRDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 307 V+ + + A + C AC+KTVY +++L AD ++H +CF C HC L L +Y + G YCKPHF QLFK G+ D+ F Sbjct: 25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 107 HSP 2 Score: 73.559 bits (179), Expect = 1.179e-12 Identity = 37/108 (34.26%), Postives = 57/108 (52.78%), Query Frame = 2 Query: 341 SADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNF---------SQLDNHEQVEAVTENA 637 S+ V S+ S+ A ++ C AC+KTVYP+E++ D +H +CF C H +S +Y A YC+ H QLF KGN+ +L H++V+ T+ A Sbjct: 21 SSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA 128
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP1_BOVIN (Cysteine and glycine-rich protein 1 OS=Bos taurus GN=CSRP1 PE=2 SV=3) HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16 Identity = 52/178 (29.21%), Postives = 83/178 (46.63%), Query Frame = 2 Query: 92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG----------SLDKSFEGTPKTVRVERS-ADQVTNSRVSSMFA---GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583 G +KC C+KTVY +++ + +HK+CF C CK L + +YCK + + + G S+DK G +R E + + T + +S FA G ++C C + VY EKV G S+HK+CFRC G + + + +YC+ + + F KG Sbjct: 5 GGGKKCGVCQKTVYFAEEVQCEGSSFHKSCFLCLVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSMDK---GESLGIRHEEAPGHRPTTNPNTSKFAQKVGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP1_MOUSE (Cysteine and glycine-rich protein 1 OS=Mus musculus GN=Csrp1 PE=1 SV=3) HSP 1 Score: 84.3445 bits (207), Expect = 6.677e-16 Identity = 50/175 (28.57%), Postives = 79/175 (45.14%), Query Frame = 2 Query: 92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVR--------VERSADQVTNSRVSSMFA---GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583 G +KC C+KTVY +++ + +HK+CF C CK L + +YCK + + + G GT T + E + T + +S FA G ++C C + VY EKV G S+HK+CFRC G + + + +YC+ + + F KG Sbjct: 5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16 Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 2 Query: 89 AGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 307 A + C C+KTVY +++L A+ +V+H +CFRC +C L L Y S G +YCKPHF+QLFK G+ D+ F Sbjct: 382 APAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 454 HSP 2 Score: 73.1738 bits (178), Expect = 1.539e-12 Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 2 Query: 341 SADQVTNSRVSSMF-AGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNFSQLDNHEQ 613 S + + S+ + F A ++ CV C+KTVYP+E++ + +H +CFRC++ +S Y + R+YC+ H NQLF KGN+ + H+Q Sbjct: 367 SLPESSPSKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHKQ 458
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP1_RAT (Cysteine and glycine-rich protein 1 OS=Rattus norvegicus GN=Csrp1 PE=2 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16 Identity = 51/178 (28.65%), Postives = 83/178 (46.63%), Query Frame = 2 Query: 92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG----------SLDKSFEGTPKTVRVERS-ADQVTNSRVSSMFA---GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583 G +KC C+KTVY +++ + +HK+CF C CK L + +YCK + + + G S+DK G ++ E + + T + +S FA G ++C C + VY EKV G S+HK+CFRC G + + + +YC+ + + F KG Sbjct: 5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSMDK---GESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15 Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 2 Query: 59 VEDPRDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 307 V+ + + A + C AC+KTVY +++L AD ++H +CF C HC L L +Y + G YC+PHF QLFK G+ D+ F Sbjct: 25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGF 107 HSP 2 Score: 74.3294 bits (181), Expect = 6.910e-13 Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 2 Query: 353 VTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKGNF---------SQLDNHEQVEAVTENA 637 V S+ S+ A ++ C AC+KTVYP+E++ D +H +CF C H +S +Y A YCR H QLF KGN+ +L H++V++ T+ A Sbjct: 25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 128
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP2_HUMAN (Cysteine and glycine-rich protein 2 OS=Homo sapiens GN=CSRP2 PE=1 SV=3) HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15 Identity = 47/176 (26.70%), Postives = 77/176 (43.75%), Query Frame = 2 Query: 92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGT------------PKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583 G KC AC +TVY +++ D + +H+ CF C C+ L + + +YCK + + + G GT P++V+ R S+ + + G + KC C +VY EK+ G +HK CFRC G + + E +YC+ + + F KG Sbjct: 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAE-KCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP2_COTJA (Cysteine and glycine-rich protein 2 OS=Coturnix coturnix japonica GN=CSRP2 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15 Identity = 52/176 (29.55%), Postives = 78/176 (44.32%), Query Frame = 2 Query: 92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVER---------SADQVTNSRVSSMFA---GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583 G KC AC +TVY +++ D + +H+ CF C C+ L + + +YCK + + + G GT R ER S + T + +S FA G +KC C +VY EKV G +HK CFRC G + + E +YC+ + + F KG Sbjct: 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGAEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 180 The following BLAST results are available for this feature:
BLAST of FC931243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931243 ID=FC931243; Name=FC931243; organism=Citrus clementina; type=EST; length=702bpback to top |