FC931243

Overview
NameFC931243
Unique NameFC931243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP2_CHICK (Cysteine and glycine-rich protein 2 OS=Gallus gallus GN=CSRP2 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 52/176 (29.55%), Postives = 78/176 (44.32%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVER---------SADQVTNSRVSSMFA---GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G   KC AC +TVY  +++  D + +H+ CF C  C+  L  +     +  +YCK  + + +   G       GT    R ER         S  + T +  +S FA   G  +KC  C  +VY  EKV   G  +HK CFRC   G  +  +     E  +YC+  + + F  KG
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESTPSPHRPTTNPNTSKFAQKFGGAEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 180          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP2_BOVIN (Cysteine and glycine-rich protein 2 OS=Bos taurus GN=CSRP2 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 47/176 (26.70%), Postives = 77/176 (43.75%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGT------------PKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G   KC AC +TVY  +++  D + +H+ CF C  C+  L  +     +  +YCK  + + +   G       GT            P++V+  R       S+ +  + G + KC  C  +VY  EK+   G  +HK CFRC   G  +  +     E  +YC+  + + F  KG
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAE-KCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP1_COTJA (Cysteine and glycine-rich protein 1 OS=Coturnix coturnix japonica GN=CSRP1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 50/174 (28.74%), Postives = 76/174 (43.68%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVER--------SADQVTNSRVSSMF--AGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G  +KC  C+K VY  +++  +   +HK+CF C  CK  L  +        +YCK  + + +   G       GT  T + E          + + TN   S M    G  D C  C + VY  EKV   G S+HK+CFRC   G  +  +     +  +YC+  + + F  KG
Sbjct:    5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGYGYGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKG 178          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP1_CHICK (Cysteine and glycine-rich protein 1 OS=Gallus gallus GN=CSRP1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 50/174 (28.74%), Postives = 76/174 (43.68%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVER--------SADQVTNSRVSSMF--AGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G  +KC  C+K VY  +++  +   +HK+CF C  CK  L  +        +YCK  + + +   G       GT  T + E          + + TN   S M    G  D C  C + VY  EKV   G S+HK+CFRC   G  +  +     +  +YC+  + + F  KG
Sbjct:    5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGYGYGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKG 178          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP2_RAT (Cysteine and glycine-rich protein 2 OS=Rattus norvegicus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.943e-15
Identity = 46/176 (26.14%), Postives = 76/176 (43.18%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGT------------PKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G   KC AC +TVY  +++  D + +H+ CF C  C+  L  +     +  +YCK  + + +   G       GT            P++ +  R       S+ +  + G  +KC  C  +VY  EK+   G  +HK CFRC   G  +  +     E  +YC+  + + F  KG
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRTFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CSRP2_MOUSE (Cysteine and glycine-rich protein 2 OS=Mus musculus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 46/176 (26.14%), Postives = 76/176 (43.18%), Query Frame = 2
Query:   92 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGT------------PKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            G   KC AC +TVY  +++  D + +H+ CF C  C+  L  +     +  +YCK  + + +   G       GT            P++ +  R       S+ +  + G + KC  C  +VY  EK+   G  +HK CFRC   G  +  +     E  +YC+  + + F  KG
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGAE-KCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CRIP2_HUMAN (Cysteine-rich protein 2 OS=Homo sapiens GN=CRIP2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 56/184 (30.43%), Postives = 82/184 (44.57%), Query Frame = 2
Query:  104 KCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYC-KPHFDQLFKMTGS---------LDKSF-EGTPKTVRVERSADQVTN----------SRVSSM--FAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYC-RHHHNQLFTQKG 583
            KC  C+KTVY  +++++  K +HK C +C  C  TL    +   +G  +C KP +  LF   G           +K   EG   T  +E  A +             SR SS+  F G  + C  C K VY  EKV   G  +H+ C RC   G  ++P  +  H+ + YC +  +  LF  KG
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CRIP2_RAT (Cysteine-rich protein 2 OS=Rattus norvegicus GN=Crip2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 54/184 (29.35%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  104 KCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYC-KPHFDQLF-----KMTGSLDKSFEGTPK---------TVRVERSADQVTN------SRVSSM--FAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYC-RHHHNQLFTQKG 583
            KC  C+KTVY  +++++  K +HK C +C  C  TL    +   +G  +C KP +  LF      + G+    +E  P           V V R+ ++ T+      S+ SS+  F G  + C  C K VY  EKV   G  +H+ C RC      ++P  +  H+ + YC +  +  LF  KG
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPPTEAPQVTGPIEVPVVRTEERKTSGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCSKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CRIP2_MOUSE (Cysteine-rich protein 2 OS=Mus musculus GN=Crip2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 54/184 (29.35%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  104 KCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYC-KPHFDQLF-----KMTGSLDKSFEGT---------PKTVRVERSADQVTN------SRVSSM--FAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYC-RHHHNQLFTQKG 583
            KC  C+KTVY  +++++  K +HK C +C  C  TL    +   +G  +C KP +  LF      + G+    +E           P  V V R+ ++ T+      S+ SS+  F G  + C  C K VY  EKV   G  +H+ C RC      ++P  +  H+ + YC +  +  LF  KG
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPQTEAPQVTGPIEVPVVRTEERKTSGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCSKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: LIMC_DICDI (LIM domain-containing protein C OS=Dictyostelium discoideum GN=limC PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 48/172 (27.91%), Postives = 67/172 (38.95%), Query Frame = 2
Query:  107 CKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMT-----GSLDKSFEGTPKTVRVERSADQVTNSRVSSMFAGTQD--------KCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFTQKG 583
            C  C K VY  + + A  K YHK C +C HC   L+L  Y   +G  YCK  +D+LF+       G +  SFE  PK      +   V  +   +    T++         C  C K  Y  E    +   +HK CF C      +    Y   E  +YC   +   F   G
Sbjct:    5 CPTCTKRVYAAEAVKACEKQYHKLCLQCFHCHKILQLGQYSERDGQPYCKTDYDRLFRQAGYRGGGVVADSFEPAPKV----ETTTPVEPTPPPTFLTPTEEVKVQLFPTNCPKCGKKAYFNELKVYNSRDWHKTCFACFSCNKNLVSGQYSEKEGLIYCPRCYQSKFGPSG 172          
The following BLAST results are available for this feature:
BLAST of FC931243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CSRP2_CHICK1.139e-1529.55Cysteine and glycine-rich protein 2 OS=Gallus gall... [more]
CSRP2_BOVIN1.139e-1526.70Cysteine and glycine-rich protein 2 OS=Bos taurus ... [more]
CSRP1_COTJA1.487e-1528.74Cysteine and glycine-rich protein 1 OS=Coturnix co... [more]
CSRP1_CHICK1.487e-1528.74Cysteine and glycine-rich protein 1 OS=Gallus gall... [more]
CSRP2_RAT1.943e-1526.14Cysteine and glycine-rich protein 2 OS=Rattus norv... [more]
CSRP2_MOUSE3.314e-1526.14Cysteine and glycine-rich protein 2 OS=Mus musculu... [more]
CRIP2_HUMAN3.314e-1530.43Cysteine-rich protein 2 OS=Homo sapiens GN=CRIP2 P... [more]
CRIP2_RAT5.652e-1529.35Cysteine-rich protein 2 OS=Rattus norvegicus GN=Cr... [more]
CRIP2_MOUSE9.642e-1529.35Cysteine-rich protein 2 OS=Mus musculus GN=Crip2 P... [more]
LIMC_DICDI6.249e-1427.91LIM domain-containing protein C OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC34103A10EF PostHarvP1 Citrus clementina cDNA clone C34103A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931243 ID=FC931243; Name=FC931243; organism=Citrus clementina; type=EST; length=702bp
GATCGAAGACTTTGTAAGTGTTCGAGGAAGTCTTAGCTTTCTTTGGTATT
TGTTGTGTGTGGAAGATCCAAGAGATATGGCGAGTTTTGCAGGGACAACA
CAGAAGTGTAAGGCGTGTGAGAAGACGGTATACTTGGTTGATCAACTTAC
TGCTGATAACAAAGTCTATCACAAGGCTTGTTTTAGATGCCACCATTGCA
AGGGCACCCTCAAGCTGAGCAACTATTGCTCCTTTGAGGGAGTTTTATAT
TGCAAGCCTCACTTTGATCAGCTGTTTAAGATGACTGGCAGCTTGGATAA
AAGTTTTGAAGGTACTCCAAAAACTGTTAGAGTTGAGAGATCTGCTGATC
AGGTCACAAATAGCAGAGTTTCAAGTATGTTTGCTGGAACTCAAGATAAA
TGCGTTGCTTGCAAGAAGACTGTTTACCCAATTGAAAAGGTGGCAGTTGA
TGGTACATCATACCATAAAGCCTGTTTCAGGTGCACCCATGGAGGTTGTG
TAATCAGCCCATCAAACTATGTGGCGCATGAGCATCGTCTCTACTGTAGG
CATCACCACAATCAGCTTTTCACGCAGAAGGGTAACTTCAGCCAACTTGA
CAACCATGAACAAGTTGAAGCGGTGACTGAGAACGCAACAGCTTAGTGAT
ACTGTGAAATTTTCTTCTGTTAATGTGACAATGTGTGATTGCTTCGGTTG
TG
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