FC931243

Overview
NameFC931243
Unique NameFC931243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: CRIP2_PONAB (Cysteine-rich protein 2 OS=Pongo abelii GN=CRIP2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 54/184 (29.35%), Postives = 80/184 (43.48%), Query Frame = 2
Query:  104 KCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYC-KPHFDQLFKMTGS---------LDKSF-EGTPKTVRVERSADQVTN----------SRVSSM--FAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYC-RHHHNQLFTQKG 583
            KC  C+KTV   +++++  K +HK C +C  C  TL    +   +G  +C KP +  LF   G           +K   EG   T  +E  A +             SR SS+  F G  + C  C K VY  EKV   G  +H+ C  C   G  ++P  +  H+ + YC +  +  LF  KG
Sbjct:    4 KCPKCDKTVCFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLHCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of FC931243 vs. ExPASy Swiss-Prot
Match: MLP2_DROME (Muscle LIM protein Mlp84B OS=Drosophila melanogaster GN=Mlp84B PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 50/173 (28.90%), Postives = 76/173 (43.93%), Query Frame = 2
Query:  104 KCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKM------TGSLDKSFEGTPKTVRVERSADQVTN-SRVSSMF---AGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYV---AHEHRLYCRHHHNQLFTQKG 583
            KC  C K+VY  ++  A   V+HK CF+C  C  +L  +N    E  LYCK    + F        TG+   S +   + +R       V N +R+       A   + C  C   VY  E++   G S+HK CF+C  G C     + +   A +  +YC+  + + F  KG
Sbjct:   11 KCPRCGKSVYAAEERLAGGYVFHKNCFKCGMCNKSLDSTNCTEHERELYCKTCHGRKFGPKGYGFGTGAGTLSMDNGSQFLRENGDVPSVRNGARLEPRAIARAPEGEGCPRCGGYVYAAEQMLARGRSWHKECFKC--GTCKKGLDSILCCEAPDKNIYCKGCYAKKFGPKG 181          
The following BLAST results are available for this feature:
BLAST of FC931243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CRIP2_PONAB1.392e-1329.35Cysteine-rich protein 2 OS=Pongo abelii GN=CRIP2 P... [more]
MLP2_DROME2.903e-1128.90Muscle LIM protein Mlp84B OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC34103A10EF PostHarvP1 Citrus clementina cDNA clone C34103A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931243 ID=FC931243; Name=FC931243; organism=Citrus clementina; type=EST; length=702bp
GATCGAAGACTTTGTAAGTGTTCGAGGAAGTCTTAGCTTTCTTTGGTATT
TGTTGTGTGTGGAAGATCCAAGAGATATGGCGAGTTTTGCAGGGACAACA
CAGAAGTGTAAGGCGTGTGAGAAGACGGTATACTTGGTTGATCAACTTAC
TGCTGATAACAAAGTCTATCACAAGGCTTGTTTTAGATGCCACCATTGCA
AGGGCACCCTCAAGCTGAGCAACTATTGCTCCTTTGAGGGAGTTTTATAT
TGCAAGCCTCACTTTGATCAGCTGTTTAAGATGACTGGCAGCTTGGATAA
AAGTTTTGAAGGTACTCCAAAAACTGTTAGAGTTGAGAGATCTGCTGATC
AGGTCACAAATAGCAGAGTTTCAAGTATGTTTGCTGGAACTCAAGATAAA
TGCGTTGCTTGCAAGAAGACTGTTTACCCAATTGAAAAGGTGGCAGTTGA
TGGTACATCATACCATAAAGCCTGTTTCAGGTGCACCCATGGAGGTTGTG
TAATCAGCCCATCAAACTATGTGGCGCATGAGCATCGTCTCTACTGTAGG
CATCACCACAATCAGCTTTTCACGCAGAAGGGTAACTTCAGCCAACTTGA
CAACCATGAACAAGTTGAAGCGGTGACTGAGAACGCAACAGCTTAGTGAT
ACTGTGAAATTTTCTTCTGTTAATGTGACAATGTGTGATTGCTTCGGTTG
TG
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