FC931246

Overview
NameFC931246
Unique NameFC931246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: YDGE_SCHPO (Putative flavoprotein C26F1.14C OS=Schizosaccharomyces pombe GN=SPAC26F1.14c PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 66/218 (30.28%), Postives = 101/218 (46.33%), Query Frame = 2
Query:   50 YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXX-YIGLELSAALKINNIDVSMVYPEPW--CMPCLFTADIAAFYE----GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP-LISLFKGQFAENKGGIKTDDFFRT-SADDVYAVGDV-----XTFPMKLYREMRRVEHVDHA 661
            Y  L++ATG    +L    + G D+KN++ LR I DA KL                   +IGLEL+  LK +N+ V  +   P+   M       + A +E     +Y    IK +K +      +N   + + + LKDG+++ AD+V++  G +P L  L      E  GG+K D+  R   A+DVYAVGD+        P    +   R+EH D A
Sbjct:  255 YTKLILATGGEPNKLP---IPGLDSKNVYLLRSIADASKLAAVTTEAGDKKNIVIIGSSFIGLELAVVLKDHNVSVIGMESIPFEKVMGKEVGTALKALHEQNGIAFYLENSIKEVKTS------SNDSSKAEHIVLKDGQSIPADVVILAAGVKPNLRYLGNAVSLEKDGGVKVDEHCRVLGAEDVYAVGDIAHAPFAGLPSSGEKSHTRIEHWDVA 463          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: RURE_PSEOL (Rubredoxin-NAD(+) reductase OS=Pseudomonas oleovorans GN=alkT PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 62/229 (27.07%), Postives = 103/229 (44.98%), Query Frame = 2
Query:    2 DIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDAD----KLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSAE 676
            D+  K + S  G  + Y+ L++AT ++  RLT    EG++   + YLR ++DA     KLVE                 IGLE+++A       V+++   P  M  + T   A         +GI+  K    +      +G V++  L+ G  ++AD++VVG+G  P + L      E   G+  DD   TS   +YA+GD        +  M R+E + +A   A+
Sbjct:   83 DVGRKIVSSKDGKEYAYEKLILATPASARRLT---CEGSELSGVCYLRSMEDAKNLRRKLVESASVVVLGGGV------IGLEVASAAVGLGKRVTVIEATPRVMARVVTPAAANLVRARLEAEGIEF-KLNAKLTSIKGRNGHVEQCVLESGEEIQADLIVVGIGAIPELELATEAALEVSNGVVVDDQMCTSDTSIYAIGDCAMARNPFWGTMVRLETIHNAVTHAQ 301          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: NIR_EMENI (Nitrite reductase [NAD(P)H] OS=Emericella nidulans GN=niiA PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 54/199 (27.14%), Postives = 89/199 (44.72%), Query Frame = 2
Query:   14 KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALK-INNI-DVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL--FKGQFAENKGGIKTDDFFRTSADDVYAVGD 598
            KT+ ++TG I  Y ILV+ATGS  +  T     G DAK IF  R I D ++L+E                 +GLE + A+  + +   V ++    W +      D  +       + G++++         T+ D  V  +  +DG+ L+   +   +G RP   L    G     +GG   D+  RTS +D+YA+G+
Sbjct:  134 KTVKTSTGDIVSYDILVLATGSDAVLPTS--TPGHDAKGIFVYRTISDLERLMEFAANHKGQTGVTVGGGLLGLEAAKAMTDLEDFGSVKLIDRNKWVLARQLDGDAGSLVTKKIRDLGLEVLHEKRVAKIHTDDDNNVTGILFEDGQELDCCCICFAIGIRPRDELGGSTGIQCAKRGGFVIDESLRTSVNDIYAIGE 330          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: THCD_RHOER (Rhodocoxin reductase OS=Rhodococcus erythropolis GN=thcD PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 59/218 (27.06%), Postives = 98/218 (44.95%), Query Frame = 2
Query:   20 LLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSA 673
            L+ AT +  +Y  L++ATG+    L    V GA+   + YLR   +A+ L                  +IGLE++AA +   +DV++V      M    ++ ++ ++   +   G+ +   T  V     ADG    V    G  + AD VVVG+G  P I L          GI  D++ RT  +++ A+GD   +P+     + R+E V +A   A
Sbjct:   91 LIDATAI--EYDHLILATGARNRLLP---VPGANLPGVHYLRTAGEAESLTSSMASCSSLVVIGAG--FIGLEVAAAARKKGLDVTVVEAMDRPMARALSSVMSGYFSTAHTEHGVHMRLST-GVKTINAADGRAAGVTTNSGDVIHADAVVVGIGVVPNIELAALTGLPVDNGIVVDEYLRTPDENISAIGDCAAYPIPGKAGLVRLESVQNAVDQA 300          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: NASB_BACSU (Assimilatory nitrate reductase electron transfer subunit OS=Bacillus subtilis GN=nasB PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 53/185 (28.65%), Postives = 86/185 (46.49%), Query Frame = 2
Query:   50 YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKII--KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGD 598
            Y  L++ATGS+   L    + GAD K ++  R I+D   L+                  +GLE +  L+   +DVS+++     M        A   +     KG+  +  K TV++   T AD     +  KDG +L+AD++V+  G +P I L      +   GI  +DF +TS  ++YAVG+
Sbjct:  102 YDKLIVATGSSPHILP---IPGADKKGVYGFRTIEDCQALMNMAQHFQKAAVIGAGL--LGLEAAVGLQHLGMDVSVIHHSAGIMQKQLDQTAARLLQTELEQKGLTFLLEKDTVSISGATKAD----RIHFKDGSSLKADLIVMAAGVKPNIELAVSAGIKVNRGIIVNDFMQTSEPNIYAVGE 277          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: AIFM3_HUMAN (Apoptosis-inducing factor 3 OS=Homo sapiens GN=AIFM3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 55/216 (25.46%), Postives = 100/216 (46.30%), Query Frame = 2
Query:    2 DIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK--GQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRV 643
            D+ +K ++   G   +Y  L++A GS+   L+    +G + +N+F +R  +DA+++V                 ++G+E++A L      VS+V  E           +       + N  +K    T  V      +G++KEV LK  + + AD+ VVG+G  P     +  G   +++G I  +   +T+   V+A GD  TFP+  +R  R+V
Sbjct:  274 DVRTKKVVFKDGFKLEYSKLLLAPGSSPKTLS---CKGKEVENVFTIRTPEDANRVVRLARGRNVVVVGAG---FLGMEVAAYLTEKAHSVSVVELEETPFRRFLGERVGRALMKMFENNRVKFYMQT-EVSELRGQEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQTNVPGVFAAGDAVTFPL-AWRNNRKV 481          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: NAOX_METJA (Putative NADH oxidase OS=Methanocaldococcus jannaschii GN=MJ0649 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 51/184 (27.72%), Postives = 84/184 (45.65%), Query Frame = 2
Query:   50 YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAE-NKGGIKTDDFFRTSADDVYAVGD 598
            Y  LV+ATG+         +EG D   +F +R I+D   +++                 IGLE++  LK   +DV +V   P  +P     D+A   + Y   +GIK++   ++         E  E    DG+  + D+V++  G RP I L K    +  K  I+ ++  +TS  ++YAVGD
Sbjct:  104 YDYLVLATGAEPFIPP---IEGKDLDGVFKVRTIEDGRAILKYIEENGCKKVAVVGAGAIGLEMAYGLKCRGLDVLVVEMAPQVLPRFLDPDMAEIVQKYLEKEGIKVM---LSKPLEKIVGKEKVEAVYVDGKLYDVDMVIMATGVRPNIELAKKAGCKIGKFAIEVNEKMQTSIPNIYAVGD 281          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: AIFM3_MOUSE (Apoptosis-inducing factor 3 OS=Mus musculus GN=Aifm3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 55/216 (25.46%), Postives = 100/216 (46.30%), Query Frame = 2
Query:    2 DIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK--GQFAENKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRV 643
            D+ +K ++   G   +Y  L++A GS+   LT    +G D +N+F +R  +DA++++                 ++G+E++A L      VS+V  E           +       + N  +K    T  V      +G+++EV LK  + L AD+ V+G+G  P     +  G   +++G I  +   +T+   V+A GD  TFP+  +R  R+V
Sbjct:  274 DVRNKKVVFKDGFKLEYSKLLLAPGSSPKTLT---CKGKDVENVFTIRTPEDANRVLRLARGRNAVVVGAG---FLGMEVAAYLTEKAHSVSVVELEETPFRRFLGERVGRALMKMFENNRVKFYMQT-EVSELRAQEGKLQEVVLKSSKVLRADVCVLGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQTNVPGVFAAGDAVTFPL-AWRNNRKV 481          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: NASD_BACSU (Nitrite reductase [NAD(P)H] OS=Bacillus subtilis GN=nasD PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 55/201 (27.36%), Postives = 91/201 (45.27%), Query Frame = 2
Query:    2 DIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKII--KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGD 598
            D  +KT+++    I  Y  L++ATGS    L    + GAD K +   R+I D D ++                  +GLE +  L    +DVS+++  P+ M     A      +     +G+  +  K T  +      D  V+ ++ KDG ++EAD+VV+ VG RP  +L          GI  +D+ +T    +YAVG+
Sbjct:   86 DTENKTVITDADRIQPYDELILATGSVPFILP---IPGADKKGVTAFRDIKDTDTMLAASKQYKKAAVIGGGL--LGLEAARGLLNLGMDVSVIHLAPFLMERQLDATAGRLLQNELEKQGMTFLLEKQTEEIV----GDDRVEGLRFKDGTSIEADLVVMAVGIRPNTTLGAESGIPVNRGIIVNDYMQTEIPHIYAVGE 277          
BLAST of FC931246 vs. ExPASy Swiss-Prot
Match: AIFM1_DICDI (Apoptosis-inducing factor 1, mitochondrial OS=Dictyostelium discoideum GN=aif PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 62/234 (26.50%), Postives = 97/234 (41.45%), Query Frame = 2
Query:    5 IASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKIN----NIDVSMVYPEPWCMPCLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAE----NKGGIKTDDFFRTSADDVYAVGDVXTFPMKLYREMRRVEHVDHAPQSAEQA 682
            I  K +L   G + +Y   +IATG    +L        + K I   R ++D  KL E                ++G EL+ A+  N    NI +  ++PE   +  LF   ++ +        G+ +  GT+      N++     V L +G+T E D VVV  G  P  ++ K    E    N G +   +    +  D+Y  GDV ++        RRVEH DHA  + E A
Sbjct:  193 IDEKLVLLNDGKLIRYDKCLIATGGEPRQLK---FTSTNDKKISTYRTVEDFRKLYEVVKDGGKHVTVLGGG-FLGSELTCAINSNFQDKNIKIDQIFPESGVLSTLFPDYLSKYATEEIIKSGVNVHTGTLIKDVVDNSENGRLTVTLNNGKTFETDHVVVAAGIIPNTNVVKSTTLEIDPINGGYVVNPEL--QARTDLYVAGDVASYYDFSLGVRRRVEHHDHARATGEMA 420          
The following BLAST results are available for this feature:
BLAST of FC931246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
YDGE_SCHPO8.026e-1430.28Putative flavoprotein C26F1.14C OS=Schizosaccharom... [more]
RURE_PSEOL3.050e-1327.07Rubredoxin-NAD(+) reductase OS=Pseudomonas oleovor... [more]
NIR_EMENI5.202e-1327.14Nitrite reductase [NAD(P)H] OS=Emericella nidulans... [more]
THCD_RHOER3.372e-1227.06Rhodocoxin reductase OS=Rhodococcus erythropolis G... [more]
NASB_BACSU4.404e-1228.65Assimilatory nitrate reductase electron transfer s... [more]
AIFM3_HUMAN9.811e-1225.46Apoptosis-inducing factor 3 OS=Homo sapiens GN=AIF... [more]
NAOX_METJA1.281e-1127.72Putative NADH oxidase OS=Methanocaldococcus jannas... [more]
AIFM3_MOUSE1.281e-1125.46Apoptosis-inducing factor 3 OS=Mus musculus GN=Aif... [more]
NASD_BACSU1.674e-1127.36Nitrite reductase [NAD(P)H] OS=Bacillus subtilis G... [more]
AIFM1_DICDI1.674e-1126.50Apoptosis-inducing factor 1, mitochondrial OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionC34103B01EF PostHarvP1 Citrus clementina cDNA clone C34103B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931246 ID=FC931246; Name=FC931246; organism=Citrus clementina; type=EST; length=694bp
AGATATTGCTTCCAAGACTCTCCTTAGTGCAACTGGGCTTATCTTTAAGT
ACCAGATTTTAGTAATTGCAACTGGTTCTACAGTTTTACGGTTGACTGAT
TTTGGTGTTGAAGGTGCTGATGCCAAAAATATCTTCTACTTAAGAGAAAT
TGATGATGCTGATAAGCTGGTTGAAGCAATAAAAGCAAAGAAGAATGGGA
AGGCGGTGGTTGTTGGAGGAGGATACATTGGTCTTGAGCTTAGTGCAGCT
TTAAAAATAAATAATATTGATGTTAGCATGGTTTATCCTGAACCATGGTG
CATGCCTTGTCTTTTCACTGCGGATATTGCTGCTTTCTATGAGGGTTATT
ATGCCAATAAAGGAATCAAAATTATTAAGGGAACAGTTGCTGTTGGATTT
ACCACAAATGCCGATGGAGAGGTCAAAGAAGTGAAGCTGAAGGACGGCAG
GACTCTGGAAGCTGACATTGTTGTTGTTGGTGTAGGAGGAAGACCTCTTA
TATCATTATTTAAAGGGCAGTTTGCAGAGAATAAAGGAGGCATAAAGACT
GATGATTTTTTCAGGACAAGTGCTGATGATGTGTACGCTGTGGGGGATGT
GGNCACTTTCCCTATGAAATTGTACCGGGAAATGAGAAGAGTTGAGCATG
TTGACCATGCCCCGCAATCAGCTGAGCAGGCTGTGAAGACATCA
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