FC931248

Overview
NameFC931248
Unique NameFC931248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length775
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931248 vs. ExPASy Swiss-Prot
Match: MCFR_DICDI (Mitochondrial substrate carrier family protein R OS=Dictyostelium discoideum GN=mcfR PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  285 SSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR 587
            +S +V  L GGVS  ++K+  AP+ERVK+L Q + +M       + +  +       +K+EG+  LW+GNTA ++R FP  A+ +   DY K   NF  D+
Sbjct:    9 TSPMVTLLAGGVSGVIAKSTIAPLERVKILYQVKSKM-------YSFNSVYGLMKNIIKNEGLAGLWKGNTATILRIFPYSAIQWTSYDYLKN--NFVTDK 100          
BLAST of FC931248 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 48/164 (29.27%), Postives = 79/164 (48.17%), Query Frame = 3
Query:  198 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTR 689
            FW  S G  +     +   F +   EK    +    L GGV+ AVS+T+ AP++R+K+++Q      KS +++     I   F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TR
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGVAGAVSRTSTAPLDRLKVMMQVHGS--KSAKMN-----IYGGFQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFVSG----SMAGATAQTFIYPMEVLKTR 315          
BLAST of FC931248 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 47/164 (28.66%), Postives = 79/164 (48.17%), Query Frame = 3
Query:  198 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTR 689
            FW  S G  +     +   F +   EK    +    L GG++ AVS+T+ AP++R+K+++Q      KS +++     I   F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TR
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKIMMQVHGS--KSDKMN-----IFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTR 315          
The following BLAST results are available for this feature:
BLAST of FC931248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
MCFR_DICDI1.529e-1135.64Mitochondrial substrate carrier family protein R O... [more]
SCMC1_BOVIN4.449e-1129.27Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_HUMAN7.589e-1128.66Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionC34103B03EF PostHarvP1 Citrus clementina cDNA clone C34103B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931248 ID=FC931248; Name=FC931248; organism=Citrus clementina; type=EST; length=775bp
GACATTACGGAGGTCTCACACTAGGCGACCTTCTCAGGTCACCATCTTCA
GCTGCAAACATGGCAGATGGATCGTATCCATCCGTATTTCAGAAAATGCA
AGGCCAGTCATACTTCATTTCTGGGGTCTCCCCCAATTTGTATGCCCACA
ACTACAGTGTGGCAGGTTCCTTTGTTAATAGAGGATCACAGAATTCTTTT
TGGGCAGCAAGTCAGGGAACTGGCCTGGCACTTGTGTCTCCTGTTTCTCC
TATATTCGTACAAGCTCCATCAGAAAAAAGTCTTTCTTCTTTTTTGGTGG
ATTTTCTCATGGGAGGAGTTTCAGCAGCTGTTTCCAAGACTGCAGCTGCT
CCTATTGAGCGGGTTAAGCTTTTGATTCAGAATCAAGATGAGATGATCAA
GAGTGGTCGGCTCTCGCATCCGTACAAGGGGATTTCTGATTGCTTTGGTA
GAACTGTTAAGGATGAAGGCATACTATCTCTTTGGAGAGGCAACACTGCC
AATGTTATCAGATACTTCCCTACCCAGGCCCTGAACTTTGCATTCAAGGA
TTACTTTAAGAGGCTGTTTAACTTCAAGAAAGACAGAGATGGCTACTGGA
AGTGGTTTGCTGGGAACTTGGCATCTGGTGGGGCTGCTGGTGCTTCATCG
CTTCTTTTTGTGTATTCGCTTGACTATGCAAGAACACGTTGGCAATGATG
CTAGGCAGCTAAAAGGGTGGGGAAAGCAGTTTATGGTTTGATGATGTCTA
CAGAAGATCTGAATCTGATGCATGC
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