FC931249

Overview
NameFC931249
Unique NameFC931249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931249 vs. ExPASy Swiss-Prot
Match: ESYT3_XENTR (Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 48/179 (26.82%), Postives = 89/179 (49.72%), Query Frame = 1
Query:   13 VIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNME------MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPL 528
            ++  L  ++P + AV +  +  P   I++T      ++  IPG++D  D  +  +I   L  P+R  VP+    V  ++L    P G + + +++A +L   +      + GKSDPYAV+ I      K+  +  NLNP W + +E +  +   Q L  +++D+D  +D  LG + + L
Sbjct:  266 ILAPLLPDLPFVGAVTMFFIQRPHLDINWTGLT---NVLEIPGVSDFSDSMIVDMIASHLVLPNRFTVPLSS-QVQAAQLRFPLPHGVLRLHLIEAEDLIPKDNYLKGIIRGKSDPYAVLRIGNQ-NFKSRTIKENLNPKWGEMYEFVVHEVPGQDLEVDLYDEDPDKDDFLGSLVIGL 439          
BLAST of FC931249 vs. ExPASy Swiss-Prot
Match: TCB3_YEAST (Tricalbin-3 OS=Saccharomyces cerevisiae GN=TCB3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 58/190 (30.53%), Postives = 98/190 (51.58%), Query Frame = 1
Query:    7 IRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGS------LTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKS-DPYAVVHIKPLF-----KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFD-KDIGQDKRLGIVKLPLIDL 537
            +R+  +  +  P I  V + LL EP P ID+ LK +GG       ++ +PG+   + + ++S I  ML  P+ + + +  I    S+  +   G +AVTI  A++LK  + I  + DPY V+  +        +V+T++  N  NP WN+T  L+    E Q L  + FD  D+ +D  +G ++L L DL
Sbjct:  403 MRIKVEFGKAFPNIKIVSLQLL-EP-PLIDFALKPIGGDTLGLDVMSFLPGLKSFVKNIINSNIGPMLFPPNHLDINVEDIMAAQSKEAI---GVLAVTIASADSLKGSDFITNTVDPYIVMTTEDAVPGTDEEVRTSIKSNVKNPRWNETKYLLLNTLE-QKLNLKCFDFNDVRKDTVIGDLQLDLADL 586          
The following BLAST results are available for this feature:
BLAST of FC931249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ESYT3_XENTR2.604e-1226.82Extended synaptotagmin-3 OS=Xenopus tropicalis GN=... [more]
TCB3_YEAST1.688e-1130.53Tricalbin-3 OS=Saccharomyces cerevisiae GN=TCB3 PE... [more]

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Properties
Property NameValue
Genbank descriptionC34103B04EF PostHarvP1 Citrus clementina cDNA clone C34103B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931249 ID=FC931249; Name=FC931249; organism=Citrus clementina; type=EST; length=698bp
ACTGTTATACGTGTTATCTTCCAACTTGCTGAAGAGATACCCTGCATTTC
TGCTGTTGTTGTTGCTCTACTTTCTGAGCCAAAGCCAAGAATTGACTATA
CACTGAAGGCTGTTGGTGGAAGCTTGACAGCCATTCCTGGAATTGCAGAT
ATGATCGATGATACTGTGGATTCAATCATCACAGACATGCTTCAGTGGCC
TCATAGAATTGTTGTTCCGATTGGCGGTATACCTGTGGATACTAGTGAAT
TAGAGCTTAAACCTCAGGGGAAGGTTGCAGTGACCATAGTGAAAGCGAAT
AATTTGAAGAACATGGAAATGATTGGGAAATCTGATCCATATGCTGTTGT
GCATATCAAGCCGCTATTCAAGGTTAAAACGAATGTCGTAGACAACAACC
TGAATCCTGTTTGGAATCAAACATTTGAGTTGATTGCAGAAGACAAAGAG
ACTCAGTCACTTATCTTTGAGGTTTTTGATAAGGACATTGGGCAAGATAA
GAGATTGGGAATAGTGAAACTGCCCTTGATTGATCTCGAAGCAGATACTC
CAAAAGAGGCTGAATTGAGACTCCTACCGTCACTTGATATGCTGAAAATA
AAAGATAAGAAGGACAGAGGAAGCATTACTGTAAAGGTACTATATCATGA
ATTTAACAGGAGGAGCAGTTGTCTGCTCTAGAGGAAGAGAAGAGTTCC
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