FC931252

Overview
NameFC931252
Unique NameFC931252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14129 contig Ccv1_Contig14129:338..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.460e-46
Identity = 94/209 (44.98%), Postives = 137/209 (65.55%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            +G+ ++ + +N  +V       Y V            P+  VAL   S  L  +LP + D  + ++  ++ PD  Y  IGG+D Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVAHHT   FIRV GSE VQKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELL  +
Sbjct:   89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQM 296          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.907e-46
Identity = 94/209 (44.98%), Postives = 136/209 (65.07%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            +G+ ++ + +N  +V       Y V            P+  VAL   S  L  +LP   D  + ++  ++ PD  Y  IGG+D Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVAHHT   FIRV GSE VQKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELL  +
Sbjct:   89 IGQFLEAVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQM 296          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 4.247e-46
Identity = 97/194 (50.00%), Postives = 134/194 (69.07%), Query Frame = 1
Query:  112 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690
            P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E FE LGI  PKGVLLYGPPGTGKTL+ARA A  T+ TF++++G +LVQ +IG+G+++VR+ F++A+E +P IIF+DEID+IG+ R +S   +GD EVQRTMLELL  L       ++      N  DILD
Sbjct:  131 PGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 323          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.247e-46
Identity = 94/218 (43.12%), Postives = 140/218 (64.22%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKL 654
            +G+ ++ + +N  +V       Y V            P   VAL   S  L  +LP + D  + +++ ++ PD +Y  IGGLD Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVA +T  +FIRV GSE VQKY+GEG RMVR++F +A+E++PSIIF+DEID+I + R ++ +G  D EVQR +LELL  +      T +
Sbjct:   85 IGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQSTNV 301          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 4.247e-46
Identity = 94/194 (48.45%), Postives = 134/194 (69.07%), Query Frame = 1
Query:  112 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690
            P+  V +  DSY++   LPS+ D  V  M+V++ P  TY  +GGLD+QI+E+ E I LP+K  + F+ +GI  PKG L+YGPPGTGKTLLARA A  T+ TF++++  +LVQ YIGEG+++VR+ F +A+E AP+IIF+DE+D+IG+ R +S   +GD EVQRTMLELL  L       ++      N +D+LD
Sbjct:  142 PNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS-EKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.547e-46
Identity = 97/194 (50.00%), Postives = 133/194 (68.56%), Query Frame = 1
Query:  112 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690
            P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E FE LG+  PKGVLLYGPPGTGKTL+ARA A  T+ TF++++G +LVQ +IG+G+++VR+ F +A+E AP IIF+DEID+IG+ R +S   +GD EVQRTMLELL  L       ++      N  DILD
Sbjct:  132 PGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILD 324          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.547e-46
Identity = 104/234 (44.44%), Postives = 145/234 (61.97%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVN--LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            VG VV+V+ ++  +V         +            P   VAL  D+ ++   LP   D  V   ++K +  PD TY+ IGGL++QI+E+ E I L + HPE FE L I  PKGVL+YGPPGTGKTL+ARA A  T+ TF++++G +LVQ YIG+G+R+VR+ F +A+E  P+IIF+DEID+IG+ R +S    GD EVQRTMLELL  L       + K+ +   N +DILD
Sbjct:   70 VGNVVEVLDEHSGVVNASTRMSSYLPITGLIPNSELRPGDLVALHKDTNIVFEKLPPDYDMKVGGMVLKSDAKPDETYEDIGGLERQIEELNEAIVLSLTHPERFEKLNIKPPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVRDAFALAKERKPTIIFIDEIDAIGAKRSDSDQ-TGDREVQRTMLELLNQLDGFSSSEEVKIIA-ATNRVDILD 301          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.547e-46
Identity = 94/194 (48.45%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  112 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690
            P   V +  DSY++   LP + D  V  M++++ P   Y  IGGLD+QI+E+ E + LP+ H E FES+GI  PKGVL+YGPPGTGKTLLARA A  T+ T+++++G +LVQ +IG+G+++VR+ F +A+E  P+IIF+DE+D+IG+ R +S   +GD EVQRTMLELL  L        +      N IDILD
Sbjct:  129 PGDLVGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILD 321          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.547e-46
Identity = 97/194 (50.00%), Postives = 133/194 (68.56%), Query Frame = 1
Query:  112 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690
            P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E FE LG+  PKGVLLYGPPGTGKTL+ARA A  T+ TF++++G +LVQ +IG+G+++VR+ F +A+E AP IIF+DEID+IG+ R +S   +GD EVQRTMLELL  L       ++      N  DILD
Sbjct:  132 PGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILD 324          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.547e-46
Identity = 102/233 (43.78%), Postives = 144/233 (61.80%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXX-PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            +GEV++ + + + +VK     +YVV             P  RV L   +  +  ILP +VDP++  M  E     +Y  IGGL  QI+E++EV+ELP+  PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + +  F++V  S +V KYIGE +R++RE+F  AR+H P +IFMDEID+IG  R   G+ + D E+QRT++ELL  +   D   + K+     N  D+LD
Sbjct:   60 IGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLVPGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLSKVKI-IMATNRPDVLD 290          
The following BLAST results are available for this feature:
BLAST of FC931252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
PRS6B_BOVIN1.460e-4644.9826S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6B_MOUSE1.907e-4644.9826S protease regulatory subunit 6B OS=Mus musculus... [more]
PS6AB_ARATH4.247e-4650.0026S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS6B_CAEEL4.247e-4643.12Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS6A_YEAST4.247e-4648.4526S protease regulatory subunit 6A OS=Saccharomyce... [more]
PS6AA_ARATH5.547e-4650.0026S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_ENCCU5.547e-4644.4426S protease regulatory subunit 6A OS=Encephalitoz... [more]
PRS6A_DICDI5.547e-4648.4526S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS6A_BRACM5.547e-4650.0026S protease regulatory subunit 6A homolog OS=Bras... [more]
PRS10_DICDI5.547e-4643.7826S protease regulatory subunit S10B OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionC34103B07EF PostHarvP1 Citrus clementina cDNA clone C34103B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931252 ID=FC931252; Name=FC931252; organism=Citrus clementina; type=EST; length=767bp
GTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGT
TCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAGTATTGATATAA
CCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTT
CTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAA
GGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGATC
AGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACATCCC
GAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTATA
TGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGCTGTGGCTCATC
ATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAATTAGTCCAGAAA
TACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCAAG
GGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTATTGGAT
CTGCCCGAATGGAATCTGGCAGCGGAAATGGTGACAGTGAGGTGCAGAGG
ACTATGCTGGAGCTGCTCACCAGCTTGATGGATTTGAAGCATCAAACAAA
ATTAGGTTCTCATGGCGACAATCNGATTGATATTCTCGATCAGCTCTTCT
CAGCCAGACGAATGACAGAAGATGAATTTCAAAATCTATGAGAGCTCGTC
TGATATCTAAAAATCAT
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