FC931252

Overview
NameFC931252
Unique NameFC931252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14129 contig Ccv1_Contig14129:338..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: ATAD2_MOUSE (ATPase family AAA domain-containing protein 2 OS=Mus musculus GN=Atad2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.586e-22
Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  226 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLGSHGDNXIDILD 690
            +D +GGL   I  +KE++  P+ +PE+FE   I  P+G L YGPPGTGKTL+ARA+A+          F    G++ + K++GE  R +R LF  A +  P+IIF DEID +   R  S      S +  T+L L+  L        +G+   N +D +D
Sbjct:   80 FDSVGGLSSHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSRGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPAIIFFDEIDGLAPVR-SSRQDQIHSSIVSTLLALMDGLDSRGEIVVIGA--TNRLDSID 236          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.586e-22
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  223 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKL 654
            T+  I GLD  I ++K+ + LPIK   LFE+  + QP KGVLLYGPPG GKTL+A+A A    C FI +  S L  K+ GE  ++   +F +A +  PSIIF+DEIDS    R  S S +  + + +     L   +D  H  ++
Sbjct:   89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSF--LRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQV 231          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.586e-22
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  223 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKL 654
            T+  I GLD  I ++K+ + LPIK   LFE+  + QP KGVLLYGPPG GKTL+A+A A    C FI +  S L  K+ GE  ++   +F +A +  PSIIF+DEIDS    R  S S +  + + +     L   +D  H  ++
Sbjct:   89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSF--LRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQV 231          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.586e-22
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  223 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKL 654
            T+  I GLD  I ++K+ + LPIK   LFE+  + QP KGVLLYGPPG GKTL+A+A A    C FI +  S L  K+ GE  ++   +F +A +  PSIIF+DEIDS    R  S S +  + + +     L   +D  H  ++
Sbjct:   89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSF--LRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQV 231          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.295e-22
Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  223 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            T+  + G D   +E++EV+E  +K+P  F  LG   PKG+LL G PGTGKTLLA+A+A      F   +GSE  + ++G G+R VR LF  A++ AP IIF+DEID++GS R +      +   ++T+ +LL  +
Sbjct:  360 TFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ-----WEGHTKKTLHQLLVEM 488          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.244e-21
Identity = 62/148 (41.89%), Postives = 88/148 (59.46%), Query Frame = 1
Query:  175 VDPLVNLMKVEKVPDST---YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 606
            VD ++    +++V D+T    D + G       ++E + LP  +P LF+  G+ QP KG+LL+GPPG GKTLLA+AVA  +   F  +S S L  K++G+  + +R LF +AR   PSIIF+DEIDSI   R E      D+EV R M
Sbjct:  218 VDKVIGERLLDEVLDNTGVRMDDVAGCHSAKAALEEAVILPALNPNLFK--GLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEK-----DAEVSRRM 358          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.244e-21
Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  202 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            + + P+  +  I  L +  K ++E + LP+  PE F+  GI +P KGVL+ GPPGTGKTLLA+AVA     TF  VS S L  KY GE  ++VR LF MAR ++P+ IF+DEIDSI S R   G+       +R   ELL  +
Sbjct:  200 ISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQM 337          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.625e-21
Identity = 62/148 (41.89%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  175 VDPLVNLMKVEKVPDST---YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 606
            VD  +    ++++ DST    D + G       ++E + LP  +P LF   G+ QP KG+LL+GPPG GKTLLA+AVA  +   F  +S S L  K++G+  + +R LF +AR   PSIIF+DEIDSI   R E      D+EV R M
Sbjct:  248 VDKAIGERLLDEILDSTGVRMDDVAGCHSAKATLEEAVILPALNPNLFS--GLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSILCERSEK-----DAEVSRRM 388          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.625e-21
Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  202 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            + + P+  +  I  L +  K ++E + LP+  PE F+  GI +P KGVL+ GPPGTGKTLLA+AVA     TF  VS S L  KY GE  ++VR LF MAR ++P+ IF+DEIDSI S R   G+       +R   ELL  +
Sbjct:  200 ISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRR---GTSEEHEASRRMKAELLVQM 337          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.123e-21
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  235 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 558
            + G+D+   E++E++   ++ P+ F  LG   PKGVLL GPPGTGKT+LARA+A      F   SGSE  + ++G G+R VR+LF  A++ +P IIF+DEID+IG +R
Sbjct:  229 VKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAIGGSR 335          
The following BLAST results are available for this feature:
BLAST of FC931252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
ATAD2_MOUSE5.586e-2236.88ATPase family AAA domain-containing protein 2 OS=M... [more]
ATAD1_RAT5.586e-2240.69ATPase family AAA domain-containing protein 1 OS=R... [more]
ATAD1_MOUSE5.586e-2240.69ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN5.586e-2240.69ATPase family AAA domain-containing protein 1 OS=H... [more]
FTSHB_ARATH7.295e-2241.48Cell division protease ftsH homolog 11, chloroplas... [more]
SPAST_CAEEL1.244e-2141.89Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
KTNA1_RAT1.244e-2144.76Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
SPAST_CAEBR1.625e-2141.89Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
KTNA1_MOUSE1.625e-2144.76Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]
FTSH4_ARATH2.123e-2147.22Cell division protease ftsH homolog 4, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionC34103B07EF PostHarvP1 Citrus clementina cDNA clone C34103B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931252 ID=FC931252; Name=FC931252; organism=Citrus clementina; type=EST; length=767bp
GTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGT
TCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAGTATTGATATAA
CCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTT
CTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAA
GGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGATC
AGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACATCCC
GAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTATA
TGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGCTGTGGCTCATC
ATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAATTAGTCCAGAAA
TACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCAAG
GGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTATTGGAT
CTGCCCGAATGGAATCTGGCAGCGGAAATGGTGACAGTGAGGTGCAGAGG
ACTATGCTGGAGCTGCTCACCAGCTTGATGGATTTGAAGCATCAAACAAA
ATTAGGTTCTCATGGCGACAATCNGATTGATATTCTCGATCAGCTCTTCT
CAGCCAGACGAATGACAGAAGATGAATTTCAAAATCTATGAGAGCTCGTC
TGATATCTAAAAATCAT
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