FC931252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: ATAD2_MOUSE (ATPase family AAA domain-containing protein 2 OS=Mus musculus GN=Atad2 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.586e-22 Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = 1 Query: 226 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLGSHGDNXIDILD 690 +D +GGL I +KE++ P+ +PE+FE I P+G L YGPPGTGKTL+ARA+A+ F G++ + K++GE R +R LF A + P+IIF DEID + R S S + T+L L+ L +G+ N +D +D Sbjct: 80 FDSVGGLSSHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSRGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPAIIFFDEIDGLAPVR-SSRQDQIHSSIVSTLLALMDGLDSRGEIVVIGA--TNRLDSID 236
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.586e-22 Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1 Query: 223 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKL 654 T+ I GLD I ++K+ + LPIK LFE+ + QP KGVLLYGPPG GKTL+A+A A C FI + S L K+ GE ++ +F +A + PSIIF+DEIDS R S S + + + + L +D H ++ Sbjct: 89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSF--LRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQV 231
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.586e-22 Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1 Query: 223 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKL 654 T+ I GLD I ++K+ + LPIK LFE+ + QP KGVLLYGPPG GKTL+A+A A C FI + S L K+ GE ++ +F +A + PSIIF+DEIDS R S S + + + + L +D H ++ Sbjct: 89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSF--LRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQV 231
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.586e-22 Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1 Query: 223 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKL 654 T+ I GLD I ++K+ + LPIK LFE+ + QP KGVLLYGPPG GKTL+A+A A C FI + S L K+ GE ++ +F +A + PSIIF+DEIDS R S S + + + + L +D H ++ Sbjct: 89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSF--LRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQV 231
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.295e-22 Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 223 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627 T+ + G D +E++EV+E +K+P F LG PKG+LL G PGTGKTLLA+A+A F +GSE + ++G G+R VR LF A++ AP IIF+DEID++GS R + + ++T+ +LL + Sbjct: 360 TFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ-----WEGHTKKTLHQLLVEM 488
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.244e-21 Identity = 62/148 (41.89%), Postives = 88/148 (59.46%), Query Frame = 1 Query: 175 VDPLVNLMKVEKVPDST---YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 606 VD ++ +++V D+T D + G ++E + LP +P LF+ G+ QP KG+LL+GPPG GKTLLA+AVA + F +S S L K++G+ + +R LF +AR PSIIF+DEIDSI R E D+EV R M Sbjct: 218 VDKVIGERLLDEVLDNTGVRMDDVAGCHSAKAALEEAVILPALNPNLFK--GLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEK-----DAEVSRRM 358
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.244e-21 Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 1 Query: 202 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627 + + P+ + I L + K ++E + LP+ PE F+ GI +P KGVL+ GPPGTGKTLLA+AVA TF VS S L KY GE ++VR LF MAR ++P+ IF+DEIDSI S R G+ +R ELL + Sbjct: 200 ISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQM 337
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 1.625e-21 Identity = 62/148 (41.89%), Postives = 86/148 (58.11%), Query Frame = 1 Query: 175 VDPLVNLMKVEKVPDST---YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 606 VD + ++++ DST D + G ++E + LP +P LF G+ QP KG+LL+GPPG GKTLLA+AVA + F +S S L K++G+ + +R LF +AR PSIIF+DEIDSI R E D+EV R M Sbjct: 248 VDKAIGERLLDEILDSTGVRMDDVAGCHSAKATLEEAVILPALNPNLFS--GLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSILCERSEK-----DAEVSRRM 388
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.625e-21 Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 1 Query: 202 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627 + + P+ + I L + K ++E + LP+ PE F+ GI +P KGVL+ GPPGTGKTLLA+AVA TF VS S L KY GE ++VR LF MAR ++P+ IF+DEIDSI S R G+ +R ELL + Sbjct: 200 ISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRR---GTSEEHEASRRMKAELLVQM 337
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 2.123e-21 Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 235 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 558 + G+D+ E++E++ ++ P+ F LG PKGVLL GPPGTGKT+LARA+A F SGSE + ++G G+R VR+LF A++ +P IIF+DEID+IG +R Sbjct: 229 VKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAIGGSR 335 The following BLAST results are available for this feature:
BLAST of FC931252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 374
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931252 ID=FC931252; Name=FC931252; organism=Citrus clementina; type=EST; length=767bpback to top |