FC931252

Overview
NameFC931252
Unique NameFC931252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14129 contig Ccv1_Contig14129:338..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.729e-21
Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  217 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 558
            D ++  + G D+  KE+ +V+E  +++PE F  +G   PKGVLL GPPG GKTLLA+AV+      F+  SGS   +  +G G+  +R+LF  A++++P ++F+DEIDS+G  R
Sbjct:  162 DVSFSDVQGCDEVKKELVDVVEF-LRNPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSVGGNR 274          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.729e-21
Identity = 65/162 (40.12%), Postives = 98/162 (60.49%), Query Frame = 1
Query:  250 QQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLK-HQTKLGSHGDNXIDILDQLFSARRMTEDEFQ 732
            ++ K+   +I   +++P+LF   G   PK VL YGPPGTGKTL+ARA+A  T+ +FI V   EL+ +++G+ S+M+REL+  A E AP I+F+DE+D+IG +R E  S  GD  V   +  LLT L  +K ++  +     N   +LD    +R   E EF+
Sbjct:  130 EEAKKKCRIIMKYLENPKLF---GEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSR-EYQSLRGD--VSEVVNALLTELDGIKENEGVVTIAATNNPAMLDPAIRSRFEEEIEFK 285          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.176e-21
Identity = 60/158 (37.97%), Postives = 92/158 (58.23%), Query Frame = 1
Query:  139 DSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML 609
            D+Y++  +  +      N M ++       D+IG  D + + + E + LP+  PE F+  G+  P K ++L GPPGTGKTL+ARA+A  +  TF  VS ++L  K+ G+  ++VR LF +AR +APSIIF+DEID++G  R  SG       V+   L
Sbjct:  171 DAYIVQAVRGTMATNTENTMSLD-------DIIGMHDVK-QVLHEAVTLPLLVPEFFQ--GLRSPWKAMVLAGPPGTGKTLIARAIASESSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGNSGEHEASRRVKSEFL 318          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.347e-20
Identity = 60/138 (43.48%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  223 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMD 633
            T+  I GLD+ I E+K+ + LPI+   LFE   + QP KGVLLYGPPG GKTL+A+A A      FI +  S L  K+ GE  ++   +F +A +  PSIIF+DEIDS    R  S     D E    M     SL D
Sbjct:   93 TWHDIAGLDEVITELKDTVILPIQKRHLFEGSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSS-----DHEATAMMKAQFMSLWD 225          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.065e-20
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  196 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 615
            +K++K  D  +D IGGL      + E +E P K+  +F S  +    G+LLYG PG GKTLLA AVA      FI + G E++ KYIG   + VRELF  A+   P I+F DE DSI   R    +G  D  V + + ++
Sbjct:  789 VKLQK-SDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCPLRLRSGILLYGYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERAQAAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQMLTQM 927          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.065e-20
Identity = 51/134 (38.06%), Postives = 79/134 (58.96%), Query Frame = 1
Query:  226 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            ++ I GL+       E I +P++ P+LF  +    P+GVLL+GPPGTGKTL+A+++A      F  ++ S L  K++G+  ++V+ LF +A  H P+IIF+DE+DS+ S R    S N +    R   E L  L
Sbjct:  249 WEDIAGLESAKSTFLEAIIMPLRRPDLFTGVR-CPPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKR----SANENESTLRLKNEFLIHL 377          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.828e-20
Identity = 60/165 (36.36%), Postives = 91/165 (55.15%), Query Frame = 1
Query:  223 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQ-PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMD--LKHQTKLGSHGDNXIDILDQLFSAR 708
            T+  IGGLD  I ++ E +  P+  PE++ +  + Q P GVLLYGPPG GKT+LA+A+A  +   FI +  S ++ K+ GE +++V  +F +A +  P IIF+DEIDS    R  +     D EV  T+     +L D  L +   +     N I+ +D  F  R
Sbjct:   89 TFQDIGGLDPLISDLHESVIYPLMMPEVYSNSPLLQAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDSFLRERSST-----DHEVTATLKAEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLRR 248          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.918e-20
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  226 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 543
            +D IGG ++ + E+K+ I LP++      S  ++ P+G+LLYGPPG GKTLLA+AVA    C FI +  S L  K+ GE  ++   +F +A++  P+IIF+DEIDS
Sbjct:   82 WDEIGGCEELVAELKDRIILPLRFASQSGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDS 187          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.595e-19
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 1
Query:  181 PLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCT-FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 606
            PL+N  ++    D     I G +   + ++E + LP  +P LF   G+ QP +G+LL+GPPG GKTLLARAVA     T F+ VS + L  K++G+  ++VR LF +AR   P+IIF+DEIDSI   R E      ++EV R M
Sbjct:  164 PLLN--EILNQDDVKMSDIIGAETAKRALEETVILPTVNPSLFS--GLRQPAQGILLFGPPGNGKTLLARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIARNGQPTIIFIDEIDSILCERNEK-----ETEVSRRM 298          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.781e-19
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  223 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 543
            T+  + GLD+ I E+++ + LP +   LF    + QP KGVLLYGPPG GKTL+A+A A  + C FI +  S L  K+ GE  ++   +F +A +  P IIF+DEIDS
Sbjct:   92 TWRDVAGLDEIISEMQDTVILPFQKRHLFSGSKLLQPPKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDS 199          
The following BLAST results are available for this feature:
BLAST of FC931252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
YME1_SCHMA4.729e-2142.11Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
PRS2_METJA4.729e-2140.12Putative 26S protease regulatory subunit homolog M... [more]
MEI1_CAEEL6.176e-2137.97Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
ATD1B_DANRE2.347e-2043.48ATPase family AAA domain-containing protein 1-B OS... [more]
PEX1_PICPA3.065e-2040.00Peroxisome biosynthesis protein PAS1 OS=Pichia pas... [more]
FIGL1_DROME3.065e-2038.06Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
MSP1_YEAST6.828e-2036.36Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
MSP1_CAEEL8.918e-2044.34Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
SPAST_BRUMA2.595e-1942.36Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
ATD1A_DANRE5.781e-1944.44ATPase family AAA domain-containing protein 1-A OS... [more]

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Properties
Property NameValue
Genbank descriptionC34103B07EF PostHarvP1 Citrus clementina cDNA clone C34103B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931252 ID=FC931252; Name=FC931252; organism=Citrus clementina; type=EST; length=767bp
GTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGT
TCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAGTATTGATATAA
CCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTT
CTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAA
GGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGATC
AGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACATCCC
GAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTATA
TGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGCTGTGGCTCATC
ATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAATTAGTCCAGAAA
TACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCAAG
GGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTATTGGAT
CTGCCCGAATGGAATCTGGCAGCGGAAATGGTGACAGTGAGGTGCAGAGG
ACTATGCTGGAGCTGCTCACCAGCTTGATGGATTTGAAGCATCAAACAAA
ATTAGGTTCTCATGGCGACAATCNGATTGATATTCTCGATCAGCTCTTCT
CAGCCAGACGAATGACAGAAGATGAATTTCAAAATCTATGAGAGCTCGTC
TGATATCTAAAAATCAT
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