FC931252

Overview
NameFC931252
Unique NameFC931252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14129 contig Ccv1_Contig14129:338..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS2_METTM (Putative 26S protease regulatory subunit homolog MTH1011 OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.740e-15
Identity = 52/168 (30.95%), Postives = 90/168 (53.57%), Query Frame = 1
Query:  229 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLGSHGDNXIDILDQLFSARRMTEDEFQ 732
            D+IG  D +IK    +I   ++ P+ F       P+ VL +G PGTGKT+LA+++A+        +  + L+ +++G+G+R + EL+ +A + APS+IF+DE+D+IG  R         SEV   +L  +  +        +G+   N  ++LD    +R   E EF+
Sbjct:  128 DVIGQEDAKIK--CRIIMRYLEDPDRFRDWA---PRNVLFHGSPGTGKTMLAKSLANELRVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRFQSLRGDVSEVVNALLTEMDGINQNWGVVTIGA--TNNPELLDNAIRSRFEEEIEFK 288          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.273e-15
Identity = 56/152 (36.84%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  214 PDSTYDM--IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMAREH--------APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMD 633
            PD  ++   IGGLD++  +I +      +  PE+ E +G    KG+LLYGPPG GKTLLAR +    +    + V+G E++ KY+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++  L S +D
Sbjct:  211 PDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKID 359          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.273e-15
Identity = 56/152 (36.84%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  214 PDSTYDM--IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMAREH--------APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMD 633
            PD  ++   IGGLD++  +I +      +  PE+ E +G    KG+LLYGPPG GKTLLAR +    +    + V+G E++ KY+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++  L S +D
Sbjct:  211 PDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKID 359          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.273e-15
Identity = 56/152 (36.84%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  214 PDSTYDM--IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMAREH--------APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMD 633
            PD  ++   IGGLD++  +I +      +  PE+ E +G    KG+LLYGPPG GKTLLAR +    +    + V+G E++ KY+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++  L S +D
Sbjct:  211 PDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKID 359          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.273e-15
Identity = 56/152 (36.84%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  214 PDSTYDM--IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMAREH--------APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMD 633
            PD  ++   IGGLD++  +I +      +  PE+ E +G    KG+LLYGPPG GKTLLAR +    +    + V+G E++ KY+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++  L S +D
Sbjct:  211 PDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKID 359          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.273e-15
Identity = 56/152 (36.84%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  214 PDSTYDM--IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMAREH--------APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMD 633
            PD  ++   IGGLD++  +I +      +  PE+ E +G    KG+LLYGPPG GKTLLAR +    +    + V+G E++ KY+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++  L S +D
Sbjct:  211 PDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKID 359          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 54/143 (37.76%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  235 IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMA--------REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMD 633
            IGGLD +   I +      +  P + E LGI   KG+LLYGPPGTGKTL+AR +    +    + V+G E++ KY+G+    VR+LF  A         E    II  DE+D+I   R   GS  GD+ V   ++  L + MD
Sbjct:  271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKR---GSSGGDTGVGDQVVNQLLAKMD 410          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: SEC18_YEAST (Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae GN=SEC18 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.128e-14
Identity = 47/126 (37.30%), Postives = 67/126 (53.17%), Query Frame = 1
Query:  235 IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELF--------VMAREHAPSIIFMDEIDSIGSARMESGSGNG 582
            +GGLD++  +I +      I  P + E LGI+  KG+LLYGPPGTGKTL+AR +    +    + V+G E++ KY+G     +R LF            E +  II  DE+DS+   R   G G G
Sbjct:  241 VGGLDKEFTKIFRRAFASRIFPPSVIEKLGISHVKGLLLYGPPGTGKTLIARKIGTMLNAKEPKIVNGPEILSKYVGSSEENIRNLFKDAEAEYRAKGEESSLHIIIFDELDSVFKQRGSRGDGTG 366          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.599e-14
Identity = 51/143 (35.66%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  235 IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMAR--------EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMD 633
            IGGLD + ++I +      I  P + + LG+   KG+LLYGPPGTGKTL+AR +    +    + VSG  ++ KY+G+    +R LF  A         +    II  DE+D+I  +R   GS  GDS V  +++  L +++D
Sbjct:  224 IGGLDAEFRDIFRRAFSSRIFPPAIVKKLGVNHVKGMLLYGPPGTGKTLIARQIGKMLNGREPKVVSGPSILNKYVGQSEENIRMLFRDAEIEQKAKGDDSGLHIIIFDELDAICKSR---GSRQGDSGVGDSVVNQLLAMID 363          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: SEC18_CANAL (Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.779e-13
Identity = 54/165 (32.73%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  235 IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELF--------VMAREHAPSIIFMDEIDSIGSAR---MESGSGNGDSEVQRTMLELLTSLMDLKHQTKLGSHGDNXIDILD 690
            IGGLD + ++I +      I  PEL E L     KG+LLYGPPGTGKTL+AR ++   +    + V+G E++ KY+G     +R LF        +   +    +I  DE+DS+   R      G+G GD+ V + +L  +  +  L +   +G    N +D++D
Sbjct:  277 IGGLDAEFQDIFRRAFNSRILPPELAEKLDYKHCKGLLLYGPPGTGKTLIARKLSKMLNGKEPKIVNGPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGSGKSDGTGVGDNVVNQ-LLSKMDGVDQLNNILVIGM--TNRLDLID 438          
The following BLAST results are available for this feature:
BLAST of FC931252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
PRS2_METTM1.740e-1530.95Putative 26S protease regulatory subunit homolog M... [more]
NSF_RAT2.273e-1536.84Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]
NSF_PONAB2.273e-1536.84Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]
NSF_MOUSE2.273e-1536.84Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN2.273e-1536.84Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR2.273e-1536.84Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]
SEC18_SCHPO5.064e-1537.76Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
SEC18_YEAST1.128e-1437.30Vesicular-fusion protein SEC18 OS=Saccharomyces ce... [more]
NSF_DICDI5.599e-1435.66Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]
SEC18_CANAL2.779e-1332.73Vesicular-fusion protein SEC18 OS=Candida albicans... [more]

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Properties
Property NameValue
Genbank descriptionC34103B07EF PostHarvP1 Citrus clementina cDNA clone C34103B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931252 ID=FC931252; Name=FC931252; organism=Citrus clementina; type=EST; length=767bp
GTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGT
TCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAGTATTGATATAA
CCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTT
CTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAA
GGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGATC
AGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACATCCC
GAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTATA
TGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGCTGTGGCTCATC
ATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAATTAGTCCAGAAA
TACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCAAG
GGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTATTGGAT
CTGCCCGAATGGAATCTGGCAGCGGAAATGGTGACAGTGAGGTGCAGAGG
ACTATGCTGGAGCTGCTCACCAGCTTGATGGATTTGAAGCATCAAACAAA
ATTAGGTTCTCATGGCGACAATCNGATTGATATTCTCGATCAGCTCTTCT
CAGCCAGACGAATGACAGAAGATGAATTTCAAAATCTATGAGAGCTCGTC
TGATATCTAAAAATCAT
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