FC931252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.941e-47 Identity = 99/194 (51.03%), Postives = 135/194 (69.59%), Query Frame = 1 Query: 112 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690 P V + DSY++ LP++ D V M+V++ P Y IGGLD+QI+E+ E I LP+ H E FE+LGI PKGVL+YGPPGTGKTLLARA A T TF++++G +LVQ +IG+G+++VR+ F +A+E APSIIF+DE+D+IG+ R +S GD EVQRTMLELL L + T++ N +DILD Sbjct: 112 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKA-GDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILD 304
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.842e-47 Identity = 100/218 (45.87%), Postives = 140/218 (64.22%), Query Frame = 1 Query: 1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKL 654 +G+ ++ + +N +V YVV PS VAL S L ILP D +++M + PD TY +GGLD Q +EI+E +ELP+ +L+E +GI P+GVLLYGPPGTGKT+L +AVA+ T FIRV+GSE V KY+GEG RMVR++F +ARE+APSIIF+DE+DSI + R ++ +G+ D EVQR ++ELLT + T + Sbjct: 96 IGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS-DREVQRILIELLTQMDGFDQSTNV 312
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.842e-47 Identity = 96/209 (45.93%), Postives = 140/209 (66.99%), Query Frame = 1 Query: 1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627 +G+ ++ + +N +V YVV PS VAL+ S L ILP + D +++++ ++ PD +Y +GGLD Q +E++E +ELP+ +L+ +GI P+GVLLYGPPGTGKT+L +AVA+ T FIRV GSE VQKY+GEG RMVR++F MARE+AP+IIF+DEID+I + R ++ +G D EVQR ++ELLT + Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILIELLTQM 265
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 6.553e-47 Identity = 97/209 (46.41%), Postives = 140/209 (66.99%), Query Frame = 1 Query: 1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627 +G+ ++ + +N +V+ YVV PS+ VAL S L ILP + D + ++ + PD TY +GGLD Q +EI+E +ELP+ +L++ +GI P+GVLLYGPPGTGKT+L +AVA+ T +FIRV+GSE VQKY+GEG RMVR++F MARE++P+IIF+DEID+I + R ++ +G D EVQR +LELL + Sbjct: 90 IGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQM 297
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 6.553e-47 Identity = 98/194 (50.52%), Postives = 134/194 (69.07%), Query Frame = 1 Query: 112 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690 P V + DSY++ LP++ D V M+V++ P Y IGGLD+QI+E+ E I LP+ H E FE+LGI PKGVL+YGPPGTGKTLLARA A T TF++++G +LVQ +IG+G+++VR+ F +A+E APSIIF+DE+D+IG+ R +S GD EVQRTMLELL L + ++ N +DILD Sbjct: 131 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA-GDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILD 323
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2) HSP 1 Score: 186.808 bits (473), Expect = 1.118e-46 Identity = 92/196 (46.94%), Postives = 139/196 (70.92%), Query Frame = 1 Query: 40 LVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627 ++K H + + P +RVA+ N V+ L + D +M+V+ PD Y+ IGGLD Q++E++E +ELP+K P LFE++GI P GVLL+GPPGTGKTL+A+AVA TD +FI+++GSELV K+IGEG+++VR+LF +AR+H P+++F+DEID+I S R +S + +GD+EVQRTM++LL+ + Sbjct: 87 VIKQHGNNQEALTEVTDELRATLEPGSRVAVNNSLSVVRQ-LDDEADVRARVMEVDDSPDVGYEDIGGLDDQLREVRETVELPMKDPGLFETVGINPPSGVLLHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARDHEPAVVFIDEIDAIASKRTDSKT-SGDAEVQRTMMQLLSEM 280
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 1.118e-46 Identity = 96/209 (45.93%), Postives = 137/209 (65.55%), Query Frame = 1 Query: 1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627 +G+ ++ + + +V +VV P+T VAL S + +LP +VD + +M + P TY +GGLD Q +EIKE +ELP+ +L+ +GI P+GVLLYGPPGTGKT+L +AVA+HT TFIRV+GSE VQKY+GEG RMVR++F +ARE APSI+F+DE+DSI + R ++ S + D EVQR ++ELL + Sbjct: 58 MGQFLEPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDA-STSADREVQRVLIELLNQM 265
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.460e-46 Identity = 94/209 (44.98%), Postives = 137/209 (65.55%), Query Frame = 1 Query: 1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627 +G+ ++ + +N +V Y V P+ VAL S L +LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G D EVQR +LELL + Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQM 296
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.460e-46 Identity = 94/209 (44.98%), Postives = 137/209 (65.55%), Query Frame = 1 Query: 1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627 +G+ ++ + +N +V Y V P+ VAL S L +LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G D EVQR +LELL + Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQM 296
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2) HSP 1 Score: 186.422 bits (472), Expect = 1.460e-46 Identity = 94/209 (44.98%), Postives = 137/209 (65.55%), Query Frame = 1 Query: 1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627 +G+ ++ + +N +V Y V P+ VAL S L +LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G D EVQR +LELL + Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQM 296 The following BLAST results are available for this feature:
BLAST of FC931252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 374
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931252 ID=FC931252; Name=FC931252; organism=Citrus clementina; type=EST; length=767bpback to top |