FC931253

Overview
NameFC931253
Unique NameFC931253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SALTI (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhi GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 54/194 (27.84%), Postives = 85/194 (43.81%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+V++     R I++ +     +E  A                     + G W +  G    G  +  K +GIVG+G IG  +A+R    F   + Y +R++       F   Y ++  L  ++D + V   LT ET H+        +    + IN GRG ++DE  L+  L  GE+  AGLDVFE EP
Sbjct:   74 SVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SALSV (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella schwarzengrund (strain CVM19633) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 54/194 (27.84%), Postives = 85/194 (43.81%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+V++     R I++ +     +E  A                     + G W +  G    G  +  K +GIVG+G IG  +A+R    F   + Y +R++       F   Y ++  L  ++D + V   LT ET H+        +    + IN GRG ++DE  L+  L  GE+  AGLDVFE EP
Sbjct:   74 SVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SALNS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella newport (strain SL254) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 54/194 (27.84%), Postives = 85/194 (43.81%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+V++     R I++ +     +E  A                     + G W +  G    G  +  K +GIVG+G IG  +A+R    F   + Y +R++       F   Y ++  L  ++D + V   LT ET H+        +    + IN GRG ++DE  L+  L  GE+  AGLDVFE EP
Sbjct:   74 SVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SALHS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella heidelberg (strain SL476) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 54/194 (27.84%), Postives = 85/194 (43.81%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+V++     R I++ +     +E  A                     + G W +  G    G  +  K +GIVG+G IG  +A+R    F   + Y +R++       F   Y ++  L  ++D + V   LT ET H+        +    + IN GRG ++DE  L+  L  GE+  AGLDVFE EP
Sbjct:   74 SVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SALEP (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella enteritidis PT4 (strain P125109) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 54/194 (27.84%), Postives = 85/194 (43.81%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+V++     R I++ +     +E  A                     + G W +  G    G  +  K +GIVG+G IG  +A+R    F   + Y +R++       F   Y ++  L  ++D + V   LT ET H+        +    + IN GRG ++DE  L+  L  GE+  AGLDVFE EP
Sbjct:   74 SVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SALDC (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella dublin (strain CT_02021853) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 54/194 (27.84%), Postives = 85/194 (43.81%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+V++     R I++ +     +E  A                     + G W +  G    G  +  K +GIVG+G IG  +A+R    F   + Y +R++       F   Y ++  L  ++D + V   LT ET H+        +    + IN GRG ++DE  L+  L  GE+  AGLDVFE EP
Sbjct:   74 SVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SALA4 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella agona (strain SL483) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 54/194 (27.84%), Postives = 85/194 (43.81%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+V++     R I++ +     +E  A                     + G W +  G    G  +  K +GIVG+G IG  +A+R    F   + Y +R++       F   Y ++  L  ++D + V   LT ET H+        +    + IN GRG ++DE  L+  L  GE+  AGLDVFE EP
Sbjct:   74 SVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLTTARRVVDVAERVKAGEWTESIGPAWFGIDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: DHGY_CUCSA (Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 61/221 (27.60%), Postives = 100/221 (45.25%), Query Frame = 1
Query:  106 GIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYP---LGSTLGGKRVGIVGLGSIGSEVAKRLVP-FGCSIAY-----TSRKKKPGVSYPFYANVSGLAA--------------DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            G ++VD+    + G+ V N     +E  A                     R G +   G  P   +G+ L G+ VG++G G IGS  A+ +V  F  ++ Y     ++R +K   +Y  +   +G A               ++DV+ +   L + T H++NK+ + A+ K+ ++IN  RG +IDE  LV  L    +   GLDVFEDEP+    L  + N
Sbjct:   96 GYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGRYD--GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVISLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFEDEPYMKPGLADMKN 314          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SALPK (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi A (strain AKU_12601) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 54/194 (27.84%), Postives = 85/194 (43.81%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+V++     R I++ +     +E  A                     + G W +  G    G  +  K +GIVG+G IG  +A+R    F   + Y +R++       F   Y ++  L  ++D + V   LT ET H+        +    + IN GRG ++DE  L+  L  GE+  AGLDVFE EP
Sbjct:   74 SVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTTETRHLFGTTQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEHEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SALPA (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi A GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 54/194 (27.84%), Postives = 85/194 (43.81%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+V++     R I++ +     +E  A                     + G W +  G    G  +  K +GIVG+G IG  +A+R    F   + Y +R++       F   Y ++  L  ++D + V   LT ET H+        +    + IN GRG ++DE  L+  L  GE+  AGLDVFE EP
Sbjct:   74 SVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTTETRHLFGTTQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEHEP 267          
The following BLAST results are available for this feature:
BLAST of FC931253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
GHRB_SALTI6.249e-1427.84Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALSV6.249e-1427.84Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALNS6.249e-1427.84Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALHS6.249e-1427.84Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALEP6.249e-1427.84Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALDC6.249e-1427.84Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALA46.249e-1427.84Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
DHGY_CUCSA6.249e-1427.60Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-... [more]
GHRB_SALPK8.162e-1427.84Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALPA8.162e-1427.84Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionC34103B08EF PostHarvP1 Citrus clementina cDNA clone C34103B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931253 ID=FC931253; Name=FC931253; organism=Citrus clementina; type=EST; length=700bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAGGACGAGCCTCATNGTGCCAAGGAGCTGCTTACATTGGATAATG
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