FC931253

Overview
NameFC931253
Unique NameFC931253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y1556_HAEIN (Putative 2-hydroxyacid dehydrogenase HI1556 OS=Haemophilus influenzae GN=HI1556 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 45/127 (35.43%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  286 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            YP+ + + G  +G+ G G +G+EV +     G  + Y   K    V    Y     +   +D++ + C LTE T  +IN + ++ + K   +IN GRG LIDE  LV  L  G LGGA LDV   EP
Sbjct:  139 YPI-TDVRGSTLGVFGKGCLGTEVGRLANAVGMKVLYAEHKDAT-VCREGYTPFDEVLKQADIVTLHCPLTETTKDLINAETLSKMKKGAFLINTGRGPLIDELALVDALKTGHLGGAALDVMVKEP 263          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: PTXD_PSEST (Phosphonate dehydrogenase OS=Pseudomonas stutzeri GN=ptxD PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 54/200 (27.00%), Postives = 94/200 (47.00%), Query Frame = 1
Query:   88 VVG-STAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY-------TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDE 663
            VVG +  G D+ D+  C  RG+ +T   +  +   A                     R+G +        G+ L    VGI+G+G+IG  +A RL  +G ++ Y       T  +++ G+        S L A SD +++   L  +T H++N +++  +    +++N  RG+++DE  ++  L RG+LGG   DVFE E
Sbjct:   70 VVGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGEFQGWQPQFYGTGLDNATVGILGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ---VACSELFASSDFILLALPLNADTQHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEME 266          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SALG2 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 54/194 (27.84%), Postives = 84/194 (43.30%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+V++     R I++ +     +E  A                     + G W +  G    G  +  K +GIVG+G IG  +A+R    F   + Y +R++       F   Y ++  L  ++D + V   LT ET H+        +    + IN GRG + DE  L+  L  GE+  AGLDVFE EP
Sbjct:   74 SVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVADENALIAALQNGEIYAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: CTBP2_RAT (C-terminal-binding protein 2 OS=Rattus norvegicus GN=Ctbp2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 54/203 (26.60%), Postives = 83/203 (40.89%), Query Frame = 1
Query:   85 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPD-----HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN----VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            ++V   +G D+VD++     GI V N  +A  E+ A                     R G                + + G+ +G++G G  G  VA R   FG S+ +     + G+           +  L   SD + + C L E  HH+IN   +  + +   ++N  RG L+DEK L   L  G + GA LDV E EP
Sbjct:  100 VIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTVCHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEP 302          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: CTBP2_MOUSE (C-terminal-binding protein 2 OS=Mus musculus GN=Ctbp2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 54/203 (26.60%), Postives = 83/203 (40.89%), Query Frame = 1
Query:   85 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPD-----HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN----VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            ++V   +G D+VD++     GI V N  +A  E+ A                     R G                + + G+ +G++G G  G  VA R   FG S+ +     + G+           +  L   SD + + C L E  HH+IN   +  + +   ++N  RG L+DEK L   L  G + GA LDV E EP
Sbjct:  100 VIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTVCHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEP 302          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: CTBP2_HUMAN (C-terminal-binding protein 2 OS=Homo sapiens GN=CTBP2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 54/203 (26.60%), Postives = 83/203 (40.89%), Query Frame = 1
Query:   85 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPD-----HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN----VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            ++V   +G D+VD++     GI V N  +A  E+ A                     R G                + + G+ +G++G G  G  VA R   FG S+ +     + G+           +  L   SD + + C L E  HH+IN   +  + +   ++N  RG L+DEK L   L  G + GA LDV E EP
Sbjct:  100 VIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEP 302          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 51/200 (25.50%), Postives = 85/200 (42.50%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK-----KPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            E+++ +  G DH+DL      G+ V     + +   A                       G W   G       L GK VG VG G  G  + +RL PF C++ Y  R +     +  +   F  ++  +    DV+++   LTE+T  M NK+ +  + K  +I+N  RGA++D + +      G + G G DV+  +P
Sbjct:  114 ELLLTAGIGSDHIDLPAAAAAGLTVARVTGSNTVSVAEDELMRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPFNCNLLYHDRLQINPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKEKIAKMKKGVIIVNNARGAIMDTQAVADACSSGHIAGYGGDVWFPQP 313          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 55/196 (28.06%), Postives = 85/196 (43.37%), Query Frame = 1
Query:  100 TAGI--DHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            TAGI  DHVDL+     G+ V     + +   A                      NG W           L GK VG VG G IG  + +RL PF C++ Y  R K        +   F  ++  + +  D++++   LTE+T  M +K+ +  L K  +I+N  RGA++D + +V     G + G   DV+  +P
Sbjct:  122 TAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQP 317          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: YOAD_BACSU (Putative 2-hydroxyacid dehydrogenase yoaD OS=Bacillus subtilis GN=yoaD PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 44/139 (31.65%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  295 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFY--ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAK--ELLTLDN 699
            G+ L GK VG++G G++G  +AK L  F C I Y     +    +P Y  A++  + +DSD++ V    TEET  +I++     + +  + +N  R  +++ ++L+  L   ++ GA LDVF  EP      EL++L N
Sbjct:  158 GNELTGKTVGMIGFGAVGQRIAKLLTAFDCKIKYYDPYIQD--DHPLYEKASLKTVFSDSDIVSVHLPRTEETLGLIDRQYFDLMKESAIFVNTSRAVVVNREDLLFVLKEHKISGAILDVFYHEPPEESDYELISLPN 294          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 56/203 (27.59%), Postives = 90/203 (44.33%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRR--GILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAY-----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            ++ V +  G DHVDL    +   GI V     +     A                     + G W    A      L GK VG VG+G IG  V +RL PF C  + Y      S +K+  +     A++  + A  DV+ + C L E+T  + NK++++ + K   ++N  RGA++ ++++   L  G L G G DV+  +P
Sbjct:   87 KLAVTAGIGSDHVDLNAANKTNGGITVAEVTGSNVVSVAEHVLMTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRIGERVLRRLKPFDCKELLYYDYQPLSAEKEAEIGCRRVADLEEMLAQCDVVTINCPLHEKTQGLFNKELISKMKKGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQP 289          
The following BLAST results are available for this feature:
BLAST of FC931253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
Y1556_HAEIN1.066e-1335.43Putative 2-hydroxyacid dehydrogenase HI1556 OS=Hae... [more]
PTXD_PSEST1.392e-1327.00Phosphonate dehydrogenase OS=Pseudomonas stutzeri ... [more]
GHRB_SALG21.818e-1327.84Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
CTBP2_RAT1.818e-1326.60C-terminal-binding protein 2 OS=Rattus norvegicus ... [more]
CTBP2_MOUSE1.818e-1326.60C-terminal-binding protein 2 OS=Mus musculus GN=Ct... [more]
CTBP2_HUMAN1.818e-1326.60C-terminal-binding protein 2 OS=Homo sapiens GN=CT... [more]
FDH_HORVU2.375e-1325.50Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH_SOLTU3.102e-1328.06Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
YOAD_BACSU4.051e-1331.65Putative 2-hydroxyacid dehydrogenase yoaD OS=Bacil... [more]
FDH_NEUCR4.051e-1327.59Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]

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Properties
Property NameValue
Genbank descriptionC34103B08EF PostHarvP1 Citrus clementina cDNA clone C34103B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931253 ID=FC931253; Name=FC931253; organism=Citrus clementina; type=EST; length=700bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAGGACGAGCCTCATNGTGCCAAGGAGCTGCTTACATTGGATAATG
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