FC931253

Overview
NameFC931253
Unique NameFC931253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: CTBP2_BOVIN (C-terminal-binding protein 2 OS=Bos taurus GN=CTBP2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 54/203 (26.60%), Postives = 82/203 (40.39%), Query Frame = 1
Query:   85 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPD-----HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN----VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            ++V   +G D+VD++     GI V N  +A  E+ A                     R G                + + G+ +G++G G  G  VA R   FG S+ +     + G            +  L   SD + + C L E  HH+IN   +  + +   ++N  RG L+DEK L   L  G + GA LDV E EP
Sbjct:  100 VIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVLFYDPYLQDGTERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEP 302          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 60/201 (29.85%), Postives = 89/201 (44.28%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI------AYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            ++V  +  GID+VDLQ     G LV NA  A +   A                     + G W +   Y +G +L GK + ++G G +G+EVA+R    G ++      A   R +  GV    +      A   D + +   LT  T  + N +  + + K   +INV RG +IDE  LV  L  G +  A LDVF +EP
Sbjct:  147 KVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKW-ERSKY-VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISHDPYAPADRARALGVDLVSFDQAISTA---DFVSLHMPLTPATKKVFNDETFSKMKKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEP 342          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: PDXB_VIBVY (Erythronate-4-phosphate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=pdxB PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 56/203 (27.59%), Postives = 90/203 (44.33%), Query Frame = 1
Query:   97 STAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTL 693
            +TAG+DHVD    + +GI  T A        A                              A   G ++  + VGIVG G +GS + + L   G  +      K+       + ++  L  ++DV+ +   +T +    THH+INK+++ +L  + ++IN  RG ++D + L H L + +   A LDVFE EP    ELL L
Sbjct:   66 ATAGMDHVDQALLKEKGIYFTAAPGCNKVGVAEYVFSVMMVL--------------------AQQQGFSVFEQTVGIVGAGQVGSYLQQCLQGIGIKVLINDPFKQEEGDEREFTSLDRLLQEADVITLHTPITRDGKYPTHHLINKEILNSLRADQILINAARGPVVDNQALKHRLQQADGFTAALDVFEFEPEVDMELLPL 248          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: DHGY_METEA (Glycerate dehydrogenase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=hprA PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 51/200 (25.50%), Postives = 84/200 (42.00%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPD-----HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            +++  +  G D VD    + +GI V N  N                            R G W       +  YP+   + G  +GI+G G++G  +AKR    G  +       + G+      ++  +   SDV+ +   LT +T +MI  + +  + +  ++IN  RG L+DE  L+  L  G +GGAG DV   EP
Sbjct:   67 KLIAVAATGTDVVDKAAAKAQGITVVNIRNYAFNTVPEHVVGLMFALRRAIVPYANSVRRGDWNKSKQFCYFDYPIYD-IAGSTLGIIGYGALGKSIAKRAEALGMKVLAFDVFPQDGL-----VDLETILTQSDVITLHVPLTPDTKNMIGAEQLKKMKRSAILINTARGGLVDEAALLQALKDGTIGGAGFDVVAQEP 260          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: CTBP_DROME (C-terminal-binding protein OS=Drosophila melanogaster GN=CtBP PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 56/208 (26.92%), Postives = 88/208 (42.31%), Query Frame = 1
Query:   85 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNG---LWPD------HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF----YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPH 669
            I+V   +G D++D++     GI V N      E+ A                     R G     P+      HG     + + G  +G+VGLG IGS VA R   FG ++ +       G+           +  L   SD + + C L E  HH+IN+  +  +     ++N  RG L+D++ L   L +G +  A LDV E+EP+
Sbjct:   94 IIVRIGSGTDNIDVKAAGELGIAVCNVPGYGVEEVADTTMCLILNLYRRTYWLANMVREGKKFTGPEQVREAAHGC----ARIRGDTLGLVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIDKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDETLALALKQGRIRAAALDVHENEPY 297          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: PDXB_VIBSL (Erythronate-4-phosphate dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=pdxB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 59/203 (29.06%), Postives = 87/203 (42.86%), Query Frame = 1
Query:   97 STAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTL 693
            +TAG+DHVD +  + RGI  T A        A                              A   G ++  K VGI+G G +GS +AK L   G  +      K+       +  +  L   SDV+ +   +T+     THH+IN+ V+  L  + ++IN  RG ++D + L   L + +   A LDVFE EP    ELL L
Sbjct:   66 ATAGMDHVDQELMKERGIFFTAAPGCNKVGVAEYAFSAMMVL--------------------AQQQGFSVFEKTVGIIGCGQVGSYLAKCLEGIGIKVLLNDPLKQQEGDTREFTELDTLLEQSDVITLHTPITKTGEFPTHHLINEQVLNNLRADQILINAARGPVVDNQALKARLQKADGFTAVLDVFEFEPEVDFELLPL 248          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: FDH_PSESR (Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 57/196 (29.08%), Postives = 75/196 (38.27%), Query Frame = 1
Query:  100 TAGI--DHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            TAGI  DHVDLQ    R + V       S   A                     R G W           L    VG V  G IG  V +RL PF   + YT R + P      ++  ++A    +    DV+ + C L  ET HMIN + +    +   I+N  RG L D   +   L  G L G   DV+  +P
Sbjct:  120 TAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP 315          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 53/210 (25.24%), Postives = 93/210 (44.29%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA----YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+  +  G+D++D+    R+GI+V N+    +   A                     +   W       +G+ +  K +G+VGLG IGS VA      G  +     + S+++   +      ++  L +++D + +    T ET ++IN + +  +     IIN  RG +IDE+ LV  +   ++GGA LDVF  EP     L    N
Sbjct:   93 KIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQF--IGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPFISQERADQIGCTL-VDLDLLFSEADFITLHIPKTPETANLINAETLAKMKPTARIINCSRGGIIDEEALVTAIETAQIGGAALDVFAQEPLGESRLREFSN 299          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: DDH_HAEIN (2-hydroxyacid dehydrogenase homolog OS=Haemophilus influenzae GN=ddh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 54/196 (27.55%), Postives = 86/196 (43.88%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY--PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDE 663
            +IV    AG ++VDL+  +  GI V        E  A                     R   +   G   +G  + G+ VG++G G IG  V + L  FG +I      K P V      Y  +  L A S V+ + C  T E +H++N +    +    +I+N  RG+LID +  +  L + ++G  G+DV+E+E
Sbjct:   70 KIVALRCAGFNNVDLKAAQELGIQVVRVPAYSPEAVAEHTIGLMMTLNRRIHRAYQRTREANFSLEGL--IGFNMYGRTVGVIGTGKIGIAVMRILKGFGMNILAYDPFKNPVVEELGGQYVELDELYAKSHVITLHCPATPENYHLLNCEAFAKMKDGVMIVNTSRGSLIDTQAAIDALKQRKIGALGMDVYENE 263          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: PDXB_VIBPA (Erythronate-4-phosphate dehydrogenase OS=Vibrio parahaemolyticus GN=pdxB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 55/203 (27.09%), Postives = 89/203 (43.84%), Query Frame = 1
Query:   97 STAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTL 693
            +TAG+DHVD    + +GI  T A        A                              A   G ++  K VGI+G G +GS + K L   G ++      K+       +  ++ L   SD++ +   +T++    THH+I++ V+  L  + ++IN  RG ++D + L   L++ +   A LDVFE EP    ELL L
Sbjct:   66 ATAGMDHVDQALLKEKGIFFTAAPGCNKVGVAEYAFSVMMVL--------------------AQQQGFSVFDKTVGIIGAGQVGSYLEKCLKGMGINVLINDPFKQEAGDPRSFTPLAELIEQSDIITLHTPITKDGLHPTHHLIDEKVLNGLRGDQILINAARGPVVDNQALKQRLMKQDGFTAALDVFEFEPEVDMELLPL 248          
The following BLAST results are available for this feature:
BLAST of FC931253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
CTBP2_BOVIN4.051e-1326.60C-terminal-binding protein 2 OS=Bos taurus GN=CTBP... [more]
SERA_ARATH5.290e-1329.85D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
PDXB_VIBVY5.290e-1327.59Erythronate-4-phosphate dehydrogenase OS=Vibrio vu... [more]
DHGY_METEA1.179e-1225.50Glycerate dehydrogenase OS=Methylobacterium extorq... [more]
CTBP_DROME1.179e-1226.92C-terminal-binding protein OS=Drosophila melanogas... [more]
PDXB_VIBSL1.539e-1229.06Erythronate-4-phosphate dehydrogenase OS=Vibrio sp... [more]
FDH_PSESR2.010e-1229.08Formate dehydrogenase OS=Pseudomonas sp. (strain 1... [more]
SERA_SYNY32.626e-1225.24D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
DDH_HAEIN3.429e-1227.552-hydroxyacid dehydrogenase homolog OS=Haemophilus... [more]
PDXB_VIBPA4.479e-1227.09Erythronate-4-phosphate dehydrogenase OS=Vibrio pa... [more]

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Properties
Property NameValue
Genbank descriptionC34103B08EF PostHarvP1 Citrus clementina cDNA clone C34103B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931253 ID=FC931253; Name=FC931253; organism=Citrus clementina; type=EST; length=700bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAGGACGAGCCTCATNGTGCCAAGGAGCTGCTTACATTGGATAATG
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