FC931253

Overview
NameFC931253
Unique NameFC931253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: PDXB_BLOFL (Erythronate-4-phosphate dehydrogenase OS=Blochmannia floridanus GN=pdxB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  304 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLT 690
            L  K VGI+G+G+IG+ + +RL   G  ++ Y   K K       + ++  L + SD+L +   LT      T HMINKD++ AL    ++IN  RGA+++  +L+  L  G+     LDV+E EP  +  LL+
Sbjct:  114 LRDKTVGIIGVGNIGNLLYQRLNSLGVHTLLYDPYKSKCDTDRMSWKSLDILVSKSDILTLHVPLTYTGAYPTWHMINKDILDALPSNSILINTSRGAVVNNDDLLAILRCGKKINVILDVWESEPKLSLPLLS 247          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: LDHD_ECOLI (D-lactate dehydrogenase OS=Escherichia coli (strain K12) GN=ldhA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 1
Query:  295 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY-----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDE 663
            G T+ GK  G++G G IG  + + L  FG  +       ++   + GV Y    ++  L ++SDV+ + C LT E +H++N+     +    +I+N  RGALID +  +  L   ++G  G+DV+E+E
Sbjct:  139 GFTMYGKTAGVIGTGKIGVAMLRILKGFGMRLLAFDPYPSAAALELGVEY---VDLPTLFSESDVISLHCPLTPENYHLLNEAAFEQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENE 263          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRA_ENT38 (Glyoxylate/hydroxypyruvate reductase A OS=Enterobacter sp. (strain 638) GN=ghrA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 1
Query:  319 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK--PGV-SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            +GI+G G +GS+VA+ L P+G  +   SR +K  PGV S+     +      + VLI     T ET  +INK ++  L  E  ++N+ RG  + E++L+  L  G+L GA LDV+  EP
Sbjct:  139 IGILGAGVLGSKVAEALAPWGFPLRCWSRSRKTYPGVQSFAGADELPAFLKGTRVLINLLPNTAETVGIINKGLLNQLADESYLMNLARGVHVIEEDLIDALNTGKLKGAMLDVYSSEP 257          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: DDH_ZYMMO (2-hydroxyacid dehydrogenase homolog OS=Zymomonas mobilis GN=ddh PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 40/128 (31.25%), Postives = 66/128 (51.56%), Query Frame = 1
Query:  292 LGSTLGGKRVGIVGLGSIGSEVAKRLVP-FGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDE 663
            +G  +  K VGI+G+G IGS  A  +   FG ++        P ++      + ++  +   SD++ + C LT E HHMIN++ +    K   ++N  RG L+D K ++  L    LGG   DV+E+E
Sbjct:  138 IGLDVHDKTVGIIGVGHIGSVFAHIMTHGFGANVIAYKPHPDPELAKKVGFRFTSLDEVIETSDIISLHCPLTPENHHMINEETLARAKKGFYLVNTSRGGLVDTKAVIKSLKAKHLGGYAADVYEEE 265          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: LDHD_STRA5 (D-lactate dehydrogenase OS=Streptococcus agalactiae serotype V GN=ldhD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 52/193 (26.94%), Postives = 85/193 (44.04%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXR--NGLWPDHGAYPL-GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS--YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDE 663
            +AG+D  +L+  ++ GI+++N  +   E  A                     R  N  W      P+ G  LG   V I+G G IG   AK    FGC +        P       +  +V     ++D++ +    T E  H+ N D+     K  +++N+ RGAL++ K+L+  L +G L GAG+D +E E
Sbjct:   76 SAGVDMYNLELAKQHGIIISNVPSYSPESIAEFTVTIALNLIRKVELIRANVREQNFSW----TLPIRGRVLGNMTVAIIGTGRIGLATAKIFKGFGCRVIGYDIYHNPMADGILEYVNSVEEAVEEADLVSLHMPPTAENTHLFNLDMFKQFKKGAILMNMARGALVETKDLLEALDQGLLEGAGIDTYEFE 264          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: PDXB_VIBVU (Erythronate-4-phosphate dehydrogenase OS=Vibrio vulnificus GN=pdxB PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 53/203 (26.11%), Postives = 89/203 (43.84%), Query Frame = 1
Query:   97 STAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTL 693
            +TAG+DHVD    + +GI  T A        A                              A   G ++  + VGI+G G +GS + + L   G  +      K+       + ++  L  ++DV+ +   +T +    THH+IN++++ +L  + ++IN  RG ++D + L   L + +   A LDVFE EP    ELL L
Sbjct:   66 ATAGMDHVDQALLKEKGIYFTAAPGCNKVGVAEYVFSVMMVL--------------------AQQQGFSVFEQTVGIIGAGQVGSYLQQCLQGIGIKVLINDPFKQEEGDEREFTSLDRLLQEADVITLHTPITRDGKYPTHHLINEEILNSLRADQILINAARGPVVDNQALKRRLQQADGFMAALDVFEFEPEVDMELLPL 248          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: LDHD_STRP1 (D-lactate dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=ldhD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 42/127 (33.07%), Postives = 64/127 (50.39%), Query Frame = 1
Query:  295 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA----YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDE 663
            G  LG   V I+G G IG   AK    FGC +     Y S   K  + Y    +V     D+D++ +    T E  H+ N D+  +  K  +++N+ RGA+I+ ++L+  L  G L GAG+D +E E
Sbjct:  140 GRVLGDMTVAIIGTGRIGLATAKIFKGFGCKVVGYDIYQSDAAKAVLDYK--ESVEEAIKDADLVSLHMPPTAENTHLFNSDLFKSFKKGAILMNMARGAVIETQDLLDALDAGLLSGAGIDTYEFE 264          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: LDHD_STRA3 (D-lactate dehydrogenase OS=Streptococcus agalactiae serotype III GN=ldhD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 52/193 (26.94%), Postives = 84/193 (43.52%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXR--NGLWPDHGAYPL-GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS--YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDE 663
            +AG+D  +L+  ++ GI+++N  +   E  A                     R  N  W      P+ G  LG   V I+G G IG   AK    FGC +        P       +  +V      +D++ +    T E  H+ N D+     K  +++N+ RGAL++ K+L+  L +G L GAG+D +E E
Sbjct:   76 SAGVDMYNLELAKQHGIIISNVPSYSPESIAEFTVTIALNLIRKVELIRANVREQNFSW----TLPIRGRVLGNMTVAIIGTGRIGLATAKIFKGFGCRVIGYDIYHNPMADGILEYVNSVEEAVEKADLVSLHMPPTAENTHLFNLDMFKQFKKGAILMNMARGALVETKDLLEALDQGLLEGAGIDTYEFE 264          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y2355_CORGL (Uncharacterized protein Cgl2355/cg2587 OS=Corynebacterium glutamicum GN=Cgl2355 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query:  313 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP--GVSYPFYAN-VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            K V I+G G IG  + + L PF       +   +P  G    F  +    + A++DV ++   LT+ T+ ++N + +  +    V++NVGRG LI+  +LV  L  G + GA LDV + EP
Sbjct:  127 KTVAILGAGGIGVRLLEMLKPFNVKTIAVNNSGRPVEGADETFAMDKAEHVWAEADVFVLILPLTDATYQIVNAETLGKMKPSAVVVNVGRGPLINTDDLVDALNNGTIAGAALDVTDPEP 247          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: YPRB2_CORML (Uncharacterized protein in proB 3'region OS=Corynebacterium melassecola PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query:  313 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP--GVSYPFYAN-VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            K V I+G G IG  + + L PF       +   +P  G    F  +    + A++DV ++   LT+ T+ ++N + +  +    V++NVGRG LI+  +LV  L  G + GA LDV + EP
Sbjct:  127 KTVAILGAGGIGVRLLEMLKPFNVKTIAVNNSGRPVEGADETFAMDKAEHVWAEADVFVLILPLTDATYQIVNAETLGKMKPSAVLVNVGRGPLINTDDLVDALNNGTIAGAALDVTDPEP 247          
The following BLAST results are available for this feature:
BLAST of FC931253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
PDXB_BLOFL9.977e-1234.33Erythronate-4-phosphate dehydrogenase OS=Blochmann... [more]
LDHD_ECOLI9.977e-1231.25D-lactate dehydrogenase OS=Escherichia coli (strai... [more]
GHRA_ENT381.303e-1136.97Glyoxylate/hydroxypyruvate reductase A OS=Enteroba... [more]
DDH_ZYMMO1.303e-1131.252-hydroxyacid dehydrogenase homolog OS=Zymomonas m... [more]
LDHD_STRA51.702e-1126.94D-lactate dehydrogenase OS=Streptococcus agalactia... [more]
PDXB_VIBVU2.223e-1126.11Erythronate-4-phosphate dehydrogenase OS=Vibrio vu... [more]
LDHD_STRP12.223e-1133.07D-lactate dehydrogenase OS=Streptococcus pyogenes ... [more]
LDHD_STRA33.791e-1126.94D-lactate dehydrogenase OS=Streptococcus agalactia... [more]
Y2355_CORGL4.952e-1132.23Uncharacterized protein Cgl2355/cg2587 OS=Coryneba... [more]
YPRB2_CORML6.467e-1132.23Uncharacterized protein in proB 3'region OS=Coryne... [more]

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Properties
Property NameValue
Genbank descriptionC34103B08EF PostHarvP1 Citrus clementina cDNA clone C34103B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931253 ID=FC931253; Name=FC931253; organism=Citrus clementina; type=EST; length=700bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAGGACGAGCCTCATNGTGCCAAGGAGCTGCTTACATTGGATAATG
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