FC931253

Overview
NameFC931253
Unique NameFC931253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y2577_STAA8 (Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 60/212 (28.30%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+    AG +++D++  R + I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VA+R   F   + YT   +K          Y ++  L  ++D + +  A   + HH+I+ +    +     +IN  RG ++ E+ LV  L   E+ GA LDV+E EP    +L +L+N
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y2296_STAAC (Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus aureus (strain COL) GN=SACOL2296 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 60/212 (28.30%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+    AG +++D++  R + I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VA+R   F   + YT   +K          Y ++  L  ++D + +  A   + HH+I+ +    +     +IN  RG ++ E+ LV  L   E+ GA LDV+E EP    +L +L+N
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y2254_STAA3 (Putative 2-hydroxyacid dehydrogenase SAUSA300_2254 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2254 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 60/212 (28.30%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+    AG +++D++  R + I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VA+R   F   + YT   +K          Y ++  L  ++D + +  A   + HH+I+ +    +     +IN  RG ++ E+ LV  L   E+ GA LDV+E EP    +L +L+N
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y2224_STAAW (Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus aureus (strain MW2) GN=MW2224 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 60/212 (28.30%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+    AG +++D++  R + I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VA+R   F   + YT   +K          Y ++  L  ++D + +  A   + HH+I+ +    +     +IN  RG ++ E+ LV  L   E+ GA LDV+E EP    +L +L+N
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y2196_STAAS (Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 60/212 (28.30%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+    AG +++D++  R + I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VA+R   F   + YT   +K          Y ++  L  ++D + +  A   + HH+I+ +    +     +IN  RG ++ E+ LV  L   E+ GA LDV+E EP    +L +L+N
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y2178_STAAB (Putative 2-hydroxyacid dehydrogenase SAB2178 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB2178 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 60/212 (28.30%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+    AG +++D++  R + I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VA+R   F   + YT   +K          Y ++  L  ++D + +  A   + HH+I+ +    +     +IN  RG ++ E+ LV  L   E+ GA LDV+E EP    +L +L+N
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAIARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_YERE8 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ghrB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 61/206 (29.61%), Postives = 95/206 (46.12%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPFYA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKE-LLTLDN 699
            + G D+ D+    +RGI + +     +E  A                     + G W D  G    G  +  K +GI+G+G IG  +A+R    F   + YTSR+        F A   ++  L A+ D L +   +TE+T+HMI  + +  +    ++IN GRG ++DE+ L+  L  G +  AGLDVF  EP   +  LL L N
Sbjct:   74 SVGYDNFDVDALSQRGIALMHTPTVLTETVADTMMALVLSSARRVVELAERVKAGEWQDSIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEKRFGARRCSLDTLLAEVDFLCITLPMTEQTYHMIGPEQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFAQEPLPVESPLLKLPN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_ECOL6 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O6 GN=ghrB PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 58/194 (29.90%), Postives = 87/194 (44.85%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y N+  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCNLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y2305_STAAM (Putative 2-hydroxyacid dehydrogenase SAV2305 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2305 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 60/212 (28.30%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+    AG +++D++  R + I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VA+R   F   + YT   +K          Y ++  L  ++D + +  A   + HH+I+ +    +     +IN  RG ++ E+ LV  L   E+ GA LDV+E EP    +L +L+N
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTVYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y2098_STAAN (Putative 2-hydroxyacid dehydrogenase SA2098 OS=Staphylococcus aureus (strain N315) GN=SA2098 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 60/212 (28.30%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+    AG +++D++  R + I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VA+R   F   + YT   +K          Y ++  L  ++D + +  A   + HH+I+ +    +     +IN  RG ++ E+ LV  L   E+ GA LDV+E EP    +L +L+N
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTVYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNN 277          
The following BLAST results are available for this feature:
BLAST of FC931253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
Y2577_STAA84.624e-1728.30Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577... [more]
Y2296_STAAC4.624e-1728.30Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=... [more]
Y2254_STAA34.624e-1728.30Putative 2-hydroxyacid dehydrogenase SAUSA300_2254... [more]
Y2224_STAAW4.624e-1728.30Putative 2-hydroxyacid dehydrogenase MW2224 OS=Sta... [more]
Y2196_STAAS4.624e-1728.30Putative 2-hydroxyacid dehydrogenase SAS2196 OS=St... [more]
Y2178_STAAB4.624e-1728.30Putative 2-hydroxyacid dehydrogenase SAB2178 OS=St... [more]
GHRB_YERE86.039e-1729.61Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_ECOL66.039e-1729.90Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
Y2305_STAAM1.030e-1628.30Putative 2-hydroxyacid dehydrogenase SAV2305 OS=St... [more]
Y2098_STAAN1.030e-1628.30Putative 2-hydroxyacid dehydrogenase SA2098 OS=Sta... [more]

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Properties
Property NameValue
Genbank descriptionC34103B08EF PostHarvP1 Citrus clementina cDNA clone C34103B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931253 ID=FC931253; Name=FC931253; organism=Citrus clementina; type=EST; length=700bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAGGACGAGCCTCATNGTGCCAAGGAGCTGCTTACATTGGATAATG
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