FC931253

Overview
NameFC931253
Unique NameFC931253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10622 contig Ccv1_Contig10622:208..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_ECO24 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SHIBS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella boydii serotype 4 (strain Sb227) GN=ghrB PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKPSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_ECOHS (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O9:H4 (strain HS) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGGWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_CITK8 (Glyoxylate/hydroxypyruvate reductase B OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 61/206 (29.61%), Postives = 90/206 (43.69%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXA-KELLTLDN 699
            + G D+ D+     R +L+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+  P     F   Y ++  L   +D + +   LTEETHH+        +    + IN GRG ++DE  L+  L  GE+  AGLDVFE EP      LL+L N
Sbjct:   74 SVGYDNFDVAALNARSVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKVGEWTKSIGPDWFGTDVHHKTLGIVGMGRIGLALAQRAHFGFNMPILYNARRHHPEAEERFNARYCDLDTLLQAADFVCLILPLTEETHHLFGAAQFAKMKSSAIFINAGRGPVVDETALIAALQSGEIHAAGLDVFEQEPLPVDSPLLSLPN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SHIF8 (Glyoxylate/hydroxypyruvate reductase B OS=Shigella flexneri serotype 5b (strain 8401) GN=ghrB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHVAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: VANH_ENTFC (D-specific alpha-keto acid dehydrogenase OS=Enterococcus faecium GN=vanH PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.677e-16
Identity = 49/124 (39.52%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  295 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY-PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDE 663
            G  L    VG+VG G IG  V +RL  FGC +   SR +   V+Y PF      L  +SD++ +   L  +TH++I+ + +  + +   +IN GRG L+D  ELV  L  G+LGGA LDV E E
Sbjct:  141 GKVLSDMTVGVVGTGQIGKAVIERLRGFGCKVLAYSRSRSIEVNYVPF----DELLQNSDIVTLHVPLNTDTHYIISHEQIQRMKQGAFLINTGRGPLVDTYELVKALENGKLGGAALDVLEGE 260          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: SERA_PONAB (D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.677e-16
Identity = 63/211 (29.86%), Postives = 92/211 (43.60%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS-----DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            ++V  +  G+D+VDL+   R+GILV N  N  S   A                     ++G W       +G+ L GK +GI+GLG IG EVA R+   G           P VS  F   V  L  +      D + V   L   T  ++N +      K   ++N  RG ++DE  L+  L  G+  GA LDVF +EP   + L+  +N
Sbjct:   71 QVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF--MGTELNGKTLGILGLGRIGREVAIRMQSLGMKTIGYDPIISPEVSASF--GVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRGRALVDHEN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: YEAA_SCHPO (Putative 2-hydroxyacid dehydrogenase UNK4.10 OS=Schizosaccharomyces pombe GN=SPACUNK4.10 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 65/202 (32.18%), Postives = 85/202 (42.08%), Query Frame = 1
Query:  103 AGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLW-----PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG--VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELL 687
            AG + VD+  C  RGI V++   A  +  A                         W     P H          GK +GI+GLG IG  +AKR   F   I Y +R   P        + +   L A SDVL +   L   T H+I K     + +  VI+N  RGA++DE  LV  L  G +  AGLDVFE+EP     LL
Sbjct:   89 AGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALRGFNQGIFELHKNNWNANCKPSHDPE-------GKTLGILGLGGIGKTMAKRARAFDMKIVYHNRTPLPEEEAEGAEFVSFDDLLAKSDVLSLNLPLNAHTRHIIGKPEFQKMKRGIVIVNTARGAVMDEAALVEALDEGIVYSAGLDVFEEEPKIHPGLL 283          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_ECOLU (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 56/194 (28.87%), Postives = 87/194 (44.85%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ET+H+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDSLLQESDFVCLILPLTDETYHLFGAEQFGKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 58/198 (29.29%), Postives = 91/198 (45.96%), Query Frame = 1
Query:  100 TAGI--DHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR-------KKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            TAGI  DH+DLQ     G+ V     +     A                       G W   G       L GK +G VG G IG  + +RL PFGC++ Y  R       +K+ G    F  +++ +    DV+++   LTE+T  M NK+++  L K  +I+N  RGA+++ + +V  +  G +GG   DV++ +P
Sbjct:  125 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAK--FVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQP 320          
The following BLAST results are available for this feature:
BLAST of FC931253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
GHRB_ECO242.295e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_SHIBS2.997e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_ECOHS2.997e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_CITK83.914e-1629.61Glyoxylate/hydroxypyruvate reductase B OS=Citrobac... [more]
GHRB_SHIF85.112e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
VANH_ENTFC6.677e-1639.52D-specific alpha-keto acid dehydrogenase OS=Entero... [more]
SERA_PONAB6.677e-1629.86D-3-phosphoglycerate dehydrogenase OS=Pongo abelii... [more]
YEAA_SCHPO8.720e-1632.18Putative 2-hydroxyacid dehydrogenase UNK4.10 OS=Sc... [more]
GHRB_ECOLU1.139e-1528.87Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
FDH_ARATH1.139e-1529.29Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC34103B08EF PostHarvP1 Citrus clementina cDNA clone C34103B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931253 ID=FC931253; Name=FC931253; organism=Citrus clementina; type=EST; length=700bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAGGACGAGCCTCATNGTGCCAAGGAGCTGCTTACATTGGATAATG
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