FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MRP9_HUMAN (Multidrug resistance-associated protein 9 OS=Homo sapiens GN=ABCC12 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.035e-57
Identity = 105/223 (47.09%), Postives = 152/223 (68.16%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            WPS G+I  RD Q+RY  + P VL  ++      +  GIVGRTGSGKS+L   LFR+VEPA+                  RT+L++IPQDPV+F GTVR N+DP E +TDE +W+ L++  + D + K   KL ++VTENGEN+S+G+RQL+C+ R LL+  KI++LDEATAS+D+ TD L+Q +++  F  CTV+TIAHR+ +V++ D VL++ +G + E+D
Sbjct: 1114 WPSRGEITFRDYQMRYRDNTPLVLDSLNLNIQSGQTVGIVGRTGSGKSSLGMALFRLVEPASGTIFIDEVDICILSLEDLRTKLTVIPQDPVLFVGTVRYNLDPFESHTDEMLWQVLERTFMRDTIMKLPEKLQAEVTENGENFSVGERQLLCVARALLRNSKIILLDEATASMDSKTDTLVQNTIKDAFKGCTVLTIAHRLNTVLNCDHVLVMENGKVIEFD 1336          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB11C_ARATH (ABC transporter C family member 11 OS=Arabidopsis thaliana GN=ABCC11 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.533e-57
Identity = 109/230 (47.39%), Postives = 150/230 (65.22%), Query Frame = 1
Query:    7 SRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +RP   WPS G I   D+ +RY P +P VL G+S      +K G+VGRTG+GKS+++  L+RIVE                     R  LSIIPQ PV+F GTVR N+DP  E+ D  +WEAL++  + D + +    LD++V+E GEN+S+GQRQL+ L R LL+R KIL LDEATASVD  TD+LIQ+++R+ F  CT++ IAHR+ ++ID D +L+LS G + EYDS
Sbjct: 1223 NRPVSGWPSRGSIQFEDVHLRYRPGLPPVLHGLSFFVYPSEKVGVVGRTGAGKSSMLNALYRIVELEKGRILIDDYDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILFLDEATASVDVRTDSLIQRTIREEFKSCTMLIIAHRLNTIIDCDKILVLSSGQVLEYDS 1452          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCCC_DICDI (ABC transporter C family member 12 OS=Dictyostelium discoideum GN=abcC12 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.010e-56
Identity = 107/228 (46.93%), Postives = 152/228 (66.67%), Query Frame = 1
Query:   10 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            RP+  WP +G I   +L +RY   +  VL+GI+C    ++K GIVGRTG+GKS+++  LFR++E +                   R  L+IIPQDPV+F GT+R N+DP  E  D ++W  LD  QL    +  E  L+SKVTENGEN+S+GQRQL+ L R LL++ KIL+LDEATASVD  +D+LIQ ++R  FS+CT++TIAHR+ +++DSD +++L  G I E+D
Sbjct: 1036 RPSPDWPINGSIKFDNLVMRYREGLDPVLKGITCEIKAKEKIGIVGRTGAGKSSIVLALFRLIEASEGSISIDGENIAKFGLKDLRRNLAIIPQDPVLFSGTLRENLDPFNECPDHELWSILDDIQLSKVFKSTEEGLNSKVTENGENFSVGQRQLIVLARALLRKPKILVLDEATASVDGQSDSLIQATIRNKFSNCTILTIAHRLNTIMDSDKIMVLDAGKISEFD 1263          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCCA_DICDI (ABC transporter C family member 10 OS=Dictyostelium discoideum GN=abcC10 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.010e-56
Identity = 106/228 (46.49%), Postives = 155/228 (67.98%), Query Frame = 1
Query:   10 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            RP+  WP +G I   +L +RY   +  VL+GI+C    ++K GIVGRTG+GKS+++  LFR++E +                   R  L+IIPQDPV+F GT+R N+DP  E ++E ++  ++  Q+   V+  EG LDSKVTENGEN+S+GQRQL+ L R LL++ KIL+LDEATASVD  +D+LIQ ++R  FS+CT++TIAHR+ +++DSD +++L  G I E+D
Sbjct: 1042 RPSPDWPINGSIKFDNLVMRYREGLDPVLKGITCEIKAKEKIGIVGRTGAGKSSIVLALFRLIEASEGSISIDGENIAKFGLKDLRRNLAIIPQDPVLFSGTLRENLDPFNERSEEDLFSTIEDIQMSAVVKSLEGGLDSKVTENGENFSVGQRQLIVLARALLRKPKILVLDEATASVDGQSDSLIQATIRNKFSNCTILTIAHRLNTIMDSDRIMVLDAGKISEFD 1269          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MRP2_RABIT (Canalicular multispecific organic anion transporter 1 OS=Oryctolagus cuniculus GN=ABCC2 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.722e-56
Identity = 110/229 (48.03%), Postives = 150/229 (65.50%), Query Frame = 1
Query:   10 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            RP   WP  G+I   + QVRY P +  VL+GI+C     +K G+VGRTG+GKS+L   LFRI+E A                   R +L+IIPQDPV+F G++R N+DP   Y+DE+IW AL+   L   V   +  L  +V+E  +N S+GQRQL+CLGR LL++ KIL+LDEATA+VD  TD+LIQ ++R  FS CTVITIAHR+ +++DSD +++L +G I EY S
Sbjct: 1287 RPPAGWPHKGEIQFSNYQVRYRPELDLVLKGINCDIKSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGHITIDGIDIASIGLHDLRGKLTIIPQDPVLFSGSLRMNLDPFNNYSDEEIWRALELAHLKSFVAGLQHGLSREVSEAEDNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDHLIQTTIRNEFSHCTVITIAHRLHTIMDSDKIMVLDNGNIVEYGS 1515          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MRP4_HUMAN (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 2.249e-56
Identity = 103/230 (44.78%), Postives = 155/230 (67.39%), Query Frame = 1
Query:    4 KSRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            + RP  +WP  G I   ++   Y+P  P VL+ ++     ++K GIVGRTG+GKS+LI  LFR+ EP                    R ++SIIPQ+PV+F GT+R N+DP  E+TDE++W AL + QL + +    GK+D+++ E+G N+S+GQRQLVCL R +L++ +IL++DEATA+VD  TD LIQ+ +R+ F+ CTV+TIAHR+ ++IDSD +++L  G ++EYD
Sbjct: 1028 QKRPPPAWPHEGVIIFDNVNFMYSPGGPLVLKHLTALIKSQEKVGIVGRTGAGKSSLISALFRLSEPEGKIWIDKILTTEIGLHDL-RKKMSIIPQEPVLFTGTMRKNLDPFNEHTDEELWNALQEVQLKETIEDLPGKMDTELAESGSNFSVGQRQLVCLARAILRKNQILIIDEATANVDPRTDELIQKKIREKFAHCTVLTIAHRLNTIIDSDKIMVLDSGRLKEYD 1256          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB12C_ARATH (ABC transporter C family member 12 OS=Arabidopsis thaliana GN=ABCC12 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.249e-56
Identity = 109/230 (47.39%), Postives = 149/230 (64.78%), Query Frame = 1
Query:    7 SRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +RP   WPS G I   D+ +RY P +P VL G++      +K G+VGRTG+GKS+++  LFRIVE                     R  LSIIPQ PV+F GTVR N+DP  E+ D  +WEAL +  + D + +    LD++V E GEN+S+GQRQL+ L R LL+R KIL+LDEATASVD  TD+LIQ+++R+ F  CT++ IAHR+ ++ID D +L+LS G + EYDS
Sbjct: 1223 NRPVCGWPSGGSIKFEDVHLRYRPGLPPVLHGLTFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEVEKGRIMIDDCDVAKFGLTDVRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAGLWEALHRAHIKDVISRNPFGLDAEVCEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDS 1452          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCCB_HUMAN (ATP-binding cassette transporter sub-family C member 11 OS=Homo sapiens GN=ABCC11 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.837e-56
Identity = 102/223 (45.74%), Postives = 151/223 (67.71%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            WP HG+I  +D  ++Y  + P VL GI+ T  G +  GIVGRTGSGKS+L   LFR+VEP A                  R++LS+IPQDPV+  GT+R N+DP + +TD+QIW+AL++  L   + K   KL + V ENG N+S+G+RQL+C+ R +L+  KI+++DEATAS+D  TD LIQ+++R+ F  CTV+ IAHR+T+V++ D +L++ +G + E+D
Sbjct: 1135 WPQHGEIIFQDYHMKYRDNTPTVLHGINLTIRGHEVVGIVGRTGSGKSSLGMALFRLVEPMAGRILIDGVDICSIGLEDLRSKLSVIPQDPVLLSGTIRFNLDPFDRHTDQQIWDALERTFLTKAISKFPKKLHTDVVENGGNFSVGERQLLCIARAVLRNSKIILIDEATASIDMETDTLIQRTIREAFQGCTVLVIAHRVTTVLNCDHILVMGNGKVVEFD 1357          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB1C_ARATH (ABC transporter C family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.011e-56
Identity = 110/230 (47.83%), Postives = 148/230 (64.35%), Query Frame = 1
Query:    7 SRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +RP   WPS G I   D+ +RY P +P VL G+S       K GIVGRTG+GKS+L+  LFRIVE                     R  L IIPQ PV+F GTVR N+DP  E+ D  +WE+L++  L D +R+    LD++VTE GEN+S+GQRQL+ L R LL+R KIL+LDEATA+VD  TD LIQ+++R+ F  CT++ IAHR+ ++ID D VL+L  G ++E+ S
Sbjct: 1225 NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIVELEKGRILIDECDIGRFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWESLERAHLKDTIRRNPLGLDAEVTEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDVLIQKTIREEFKSCTMLIIAHRLNTIIDCDKVLVLDSGKVQEFSS 1454          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABC2_SCHPO (ATP-binding cassette transporter abc2 OS=Schizosaccharomyces pombe GN=abc2 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.548e-56
Identity = 108/229 (47.16%), Postives = 148/229 (64.63%), Query Frame = 1
Query:   10 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            RP   WPSHG I      VRY  ++P VL  IS     ++K GIVGRTG+GKSTL   LFR++EP +                  R+RL+IIPQ+   FEGT+R N+DP    TDE+IW AL+   L   ++  +G L S+VTE G N S GQRQL+CL R LL   ++L+LDEATA+VD  TD ++Q+++R+ F+D T++TIAHRI +V+DS+ +L+L HG + E+DS
Sbjct: 1228 RPPEGWPSHGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIEPTSGDIQLDDINITSIGLHDLRSRLAIIPQENQAFEGTIRENLDPNANATDEEIWHALEAASLKQFIQTLDGGLYSRVTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAVDVETDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGKVVEFDS 1456          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MRP9_HUMAN2.035e-5747.09Multidrug resistance-associated protein 9 OS=Homo ... [more]
AB11C_ARATH4.533e-5747.39ABC transporter C family member 11 OS=Arabidopsis ... [more]
ABCCC_DICDI1.010e-5646.93ABC transporter C family member 12 OS=Dictyosteliu... [more]
ABCCA_DICDI1.010e-5646.49ABC transporter C family member 10 OS=Dictyosteliu... [more]
MRP2_RABIT1.722e-5648.03Canalicular multispecific organic anion transporte... [more]
MRP4_HUMAN2.249e-5644.78Multidrug resistance-associated protein 4 OS=Homo ... [more]
AB12C_ARATH2.249e-5647.39ABC transporter C family member 12 OS=Arabidopsis ... [more]
ABCCB_HUMAN3.837e-5645.74ATP-binding cassette transporter sub-family C memb... [more]
AB1C_ARATH5.011e-5647.83ABC transporter C family member 1 OS=Arabidopsis t... [more]
ABC2_SCHPO8.548e-5647.16ATP-binding cassette transporter abc2 OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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