FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_CHRVO (Lipid A export ATP-binding/permease protein msbA OS=Chromobacterium violaceum GN=msbA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 59/199 (29.65%), Postives = 103/199 (51.76%), Query Frame = 1
Query:   94 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            L GI       +   +VG +GSGK+TL   + R  EP+A                  R  ++++ Q   +F  TV +N+    E+ + E+I EA       + +      L++ + ENG   S GQRQ + + R LLK   +L+LDEAT+++DT ++ L+Q +L     + T I IAHR++++ ++D ++++  G + E
Sbjct:  358 LSGIDLEIQPGETVALVGSSGSGKTTLASLVPRFYEPSAGRLLLDGVPLADIPLRQLRGHIALVSQQVELFNDTVAANIAYGREDASREEIVEAARAANAMEFIEGLPDGLETVIGENGARLSGGQRQRLAIARALLKNAPLLILDEATSALDTQSERLVQAALENLMKNRTTIVIAHRLSTIENADRIVVMHQGRLAE 556          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB22B_ARATH (ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 62/232 (26.72%), Postives = 114/232 (49.14%), Query Frame = 1
Query:   10 RPNHSWPSHGKIDLRDLQVRYA-PHMPFVL--RGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +P+   P + K  ++ + V +A P  P V+  +  S      K T IVG +GSGKST+I  + R  +P                    R  + ++ Q+P++F GT+R N+      ++  + +I EA       D +       D+   + G   S GQ+Q + + R +LK   +L+LDEAT+++D  ++ ++Q +L +     T + IAHR++++ + D + +L  G + E
Sbjct: 1004 KPDGFVPQNIKGQIKFVNVDFAYPTRPDVIIFKNFSIDIDEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIGLVSQEPILFAGTIRENIMYGGASDKIDESEIIEAAKAANAHDFIVTLSDGYDTYCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDNQSERMVQDALGRLMVGRTSVVIAHRLSTIQNCDTITVLDKGKVVE 1235          

HSP 2 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 56/223 (25.11%), Postives = 113/223 (50.67%), Query Frame = 1
Query:   37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV-DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G++  + ++  Y+  P  P +   +    P  K   +VG +GSGKST+I  L R  +P                    R+++ ++ Q+P +F  ++  N+    E+ + +++ EA       D + +      ++V E G   S GQ+Q + + R ++K   +L+LDEAT+++D+ ++ ++Q++L       T I IAHR++++ + D++ +  +G I E  S
Sbjct:  377 GEVQFKHVKFMYSSRPETP-IFDDLCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEILIDGVSIKKLQVKWLRSQMGLVSQEPALFATSIEENILFGKEDASFDEVVEAAKSSNAHDFISQFPLGYKTQVGERGVQMSGGQKQRISIARAIIKSPTLLLLDEATSALDSESERVVQEALDNATIGRTTIVIAHRLSTIRNVDVICVFKNGQIVETGS 598          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y696_RICPR (Putative export ATP-binding/permease protein RP696 OS=Rickettsia prowazekii GN=RP696 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 58/196 (29.59%), Postives = 104/196 (53.06%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 675
            V+  +S      K  GIVGR+G+GKSTLIQ L R                        R  ++ +PQ+  +F  T++SN+     + +D +I E +    + +   K    +++K+ E G   S GQ+Q + + R LL++ KIL+LDEA +++DT ++  +  ++++      +I+IAHRI+S+  +D +L++  G
Sbjct:  353 VINNMSLKINSNKFVGIVGRSGAGKSTLIQLLLRFYRQENGTILINNQDISFVKPTDIRKFIAYVPQEASIFSDTIKSNIIFGNNKASDYEINEIIKITGIEEFSTKLHDGINTKIGEKGVRLSGGQKQRIAIARALLRKPKILLLDEAMSALDTMSEQKLLNAIKKIMKGNIIISIAHRISSIESADYILVIDKG 548          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y691_RICTY (Putative export ATP-binding/permease protein RT0691 OS=Rickettsia typhi GN=RT0691 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 57/198 (28.79%), Postives = 105/198 (53.03%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            ++  +S      K  GIVGR+G+GKSTLIQ L R                        R  ++ +PQ+  +F  T++SN+     + +D +I E +    + +   K    +++K+ E G   S GQ+Q + + R LL++ KIL+LDEA +++DT ++  +  ++++      +I+IAHRI+S+  +D +L++  G +
Sbjct:  353 IINNMSLKINANKFVGIVGRSGAGKSTLIQLLLRFYRQDNGTILINNQDISRINPTDIRKFIAYVPQEASIFSDTIKSNIIFGNNKASDYEINEIIKITGIEEFSNKLHDGINTKIGEKGVRLSGGQKQRIAIARALLRKPKILLLDEAMSALDTMSEQKLLNAIKKIMKGNIIISIAHRISSIESADYILVIDKGKV 550          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_THIDA (Lipid A export ATP-binding/permease protein msbA OS=Thiobacillus denitrificans (strain ATCC 25259) GN=msbA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 63/224 (28.12%), Postives = 111/224 (49.55%), Query Frame = 1
Query:   28 PSH--GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            P+H  G++  RD+ + Y       L  IS      +   +VG +GSGK+TL   + R  +P A                  R  ++++ QD V+F  T+  N+      E + ++I  A       D ++     LD+ + ENG   S GQRQ + + R +LK   IL+LDEAT+++D+ ++  +Q +L     + T + IAHR++++  ++ +++L  G I E
Sbjct:  332 PAHIEGRLAFRDVGLTYPGKQTPALARISLDIAPGETVALVGASGSGKTTLANLVPRFYDPDAGRIELDGVDIRDVKLQSLRGHIALVSQDVVLFNDTLAHNIAYGSKREASPDEIRAACVAAHAWDFIQAMPDGLDTLIGENGMRLSGGQRQRIAIARAILKNAPILILDEATSALDSESERHVQAALETLMQNRTTLVIAHRLSTIERANRIVVLEGGRIVE 555          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HEPA_ANASP (Heterocyst differentiation ATP-binding protein hepA OS=Anabaena sp. (strain PCC 7120) GN=hepA PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 58/200 (29.00%), Postives = 104/200 (52.00%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            VL  I+ T    K T +VG +G+GK+TL   + R  +P                    R +++++ QD  +F  ++R N+       ++ +I E          + +     D+K+ + G   S GQRQ + + R LL+  +IL+LDEAT+++D+ ++ LIQ+S+ +     TVI IAHR++++  +D V+++  G I E
Sbjct:  379 VLNNITLTIERGKTTALVGASGAGKTTLADLIPRFYDPTEGQILVDGLDVQYFEINSLRRKMAVVSQDTFIFNTSIRDNIAYGTSGASEAEIREVARLANALQFIEEMPEGFDTKLGDRGVRLSGGQRQRIAIARALLRDPEILILDEATSALDSVSERLIQESIEKLSVGRTVIAIAHRLSTIAKADKVVVMEQGRIVE 578          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SYNAS (Lipid A export ATP-binding/permease protein msbA OS=Syntrophus aciditrophicus (strain SB) GN=msbA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 63/217 (29.03%), Postives = 110/217 (50.69%), Query Frame = 1
Query:   40 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            KI++R++   Y      VLR I+ T    +    VG +G GK+TL+  + R  +  A                  R ++ I+ Q  ++F  TVR+N+    +  ++++I EA       D +       D+ + E G   S G+RQ + + R LLK   IL+LDEAT+S+DT  +  +Q++L +     T + IAHR++++ ++D +++L  G I E
Sbjct:  351 KIEIRNISFAYDDTP--VLRNINLTIRAGEVVAFVGMSGGGKTTLVNLIPRFYDVTAGQILIDGHDIRDVSLISLRRQIGIVTQQTILFNDTVRNNIAYGSQGCSEKEIIEAARAANAHDFIVNLPEGYDTVIGELGTKLSGGERQRISIARALLKNAPILILDEATSSLDTEAEMEVQEALERLMKGRTTLVIAHRLSTIRNADRIVVLVKGEIVE 565          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSEF5 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=msbA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 68/223 (30.49%), Postives = 109/223 (48.88%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +G +++R+L   Y      VL  IS +    K   +VGR+GSGKSTL   + R                        R  ++ + Q   +F  TV +N+    L     E I +A       D + +    LD++V ENG   S GQRQ + + R LLK   +L+LDEAT+++DT ++  IQ +L +     T + IAHR++++  +D++L++  G I E  S
Sbjct:  351 NGHLEVRNLSFTYPGTERQVLDDISFSIEPGKMVALVGRSGSGKSTLANLIPRFYHHDKGQILLDGTEVEDFRLLNLRRHIAQVTQHVTLFSDTVANNIAYGDLAGAPREDIEKAAADAYAMDFIAQLPEGLDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDKVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGS 573          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_POLSJ (Lipid A export ATP-binding/permease protein msbA OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=msbA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 60/219 (27.40%), Postives = 108/219 (49.32%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +HG I+  D+ V Y       L   S +    +   IVG +GSGK+TL+  L R VE ++                  R + + + Q  VM   ++  NV   +     ++ E L    L   + +  G +D+ +  N    S GQRQ + + R L K   IL+LDEAT+++DT ++  +Q+++++  +  T + IAHR+++V  +D ++++  G + E
Sbjct:  346 AHGDIEFADVSVIYKADAAAALDQFSLSIKAGETLAIVGASGSGKTTLVNLLPRFVEMSSGNIYLDGQDLRAWNLASLRAQFAFVSQHVVMLNNSIAVNVALGQPVDRARVTECLAAANLSGLLAELPGGIDTILGHNAMQLSGGQRQRLAIARALYKNAPILVLDEATSALDTESELAVQEAIKRLTASRTSLVIAHRLSTVQHADRIIMMEAGRMIE 564          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_COXBU (Lipid A export ATP-binding/permease protein msbA OS=Coxiella burnetii GN=msbA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 63/225 (28.00%), Postives = 105/225 (46.67%), Query Frame = 1
Query:   19 HSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            H   + G I+ + +   Y      +L  IS +    +   IVGR+G+GKSTLI  L R  + +                   R +  ++ Q   +F  T+ +N+           +I EA       + + +    LD+ + ENG   S GQRQ + + R L K   I +LDEAT+S+DT ++  IQ +L      CT + IAHR++++  +D +++L  G + E
Sbjct:  331 HLVRARGAIEYQGVSFAYDNSKKTILSEISFSIEPGQMVAIVGRSGAGKSTLINLLPRFYDASTGVIKIDDINIKEFRLQELRNQFGLVSQHTTLFNDTILNNIAYGQAGSIDKRKIIEAARAAHAMEFIEQLPEGLDTVIGENGVRLSGGQRQRIAIARALFKNAPIHILDEATSSLDTHSERHIQAALDNLMDQCTTLVIAHRLSTIERADWIMVLEEGRLIE 555          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MSBA_CHRVO1.989e-2029.65Lipid A export ATP-binding/permease protein msbA O... [more]
AB22B_ARATH1.989e-2026.72ABC transporter B family member 22 OS=Arabidopsis ... [more]
Y696_RICPR2.598e-2029.59Putative export ATP-binding/permease protein RP696... [more]
Y691_RICTY2.598e-2028.79Putative export ATP-binding/permease protein RT069... [more]
MSBA_THIDA2.598e-2028.13Lipid A export ATP-binding/permease protein msbA O... [more]
HEPA_ANASP3.393e-2029.00Heterocyst differentiation ATP-binding protein hep... [more]
MSBA_SYNAS4.431e-2029.03Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEF54.431e-2030.49Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_POLSJ4.431e-2027.40Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_COXBU4.431e-2028.00Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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