FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHEON (Lipid A export ATP-binding/permease protein msbA OS=Shewanella oneidensis GN=msbA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18 Identity = 57/186 (30.65%), Postives = 98/186 (52.69%), Query Frame = 1 Query: 139 IVGRTGSGKSTLIQTLFRIVEPA-AXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE--EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +VGR+GSGKST+ + R + R++++++ Q +F T+ +N+ E T EQI EA + + + LD++V ENG S GQRQ + + R +L+ +L+LDEAT+++DT ++ IQQ L + T + IAHR++++ +D +L++ G I E Sbjct: 392 LVGRSGSGKSTIASLVTRFYTGLESGDILLDDVSIYDYSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEVTREQIIEAATLAHAMEFIEQLPDGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVE 577
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSYA2 (Lipid A export ATP-binding/permease protein msbA OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=msbA PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18 Identity = 60/219 (27.40%), Postives = 107/219 (48.86%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+I L ++ + Y P L + + +VGR+G+GKS+L+ L R + ++ R +++++ Q V+F TV +N+ L T ++ +A D + + S++ G S GQRQ + + R LLK IL+LDEAT+++D ++ IQ++L + T + IAHR+T++ +D + +L G I E Sbjct: 355 GEIKLDNISLVY-PDSTVALHDFNLDIRAGETVALVGRSGAGKSSLVNLLTRTLSTSSGQITLDGMPIEDIKLESLRAQIAMVNQQVVLFNTTVFNNIAYGSLAHKTPAEVEQAAKDAFAHDFIMQMPNGYQSEIGAEGLQLSGGQRQRLSIARALLKDAPILILDEATSALDNESEYYIQKALDNIMRNRTTLVIAHRLTTIESADRIAVLDGGRIVE 572
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_DESPS (Lipid A export ATP-binding/permease protein msbA OS=Desulfotalea psychrophila GN=msbA PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18 Identity = 57/224 (25.45%), Postives = 106/224 (47.32%), Query Frame = 1 Query: 28 PSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 P I+ D+ Y +L I+ P + IVG +G GK+TL + R ++ R +++++ Q ++F T+R+N+ + T+E+I A + + D+ + E G S GQRQ + + R LL IL+LDEAT+++DT ++ +Q++L + T IAHR++++ ++ ++++ G I E S Sbjct: 333 PFKESIEFHDVSFSYGTEK--ILSHINLKVPAGEALAIVGPSGGGKTTLTNLIPRFIDLQEGSITIDGTDIRDVTTNSLRNQIAMVTQQTILFNDTIRNNIAYGKDSCTEEEIRRAAKAAHALTFIEELPNGFDTALGEGGAKLSGGQRQRISIARALLADAPILILDEATSALDTESEREVQKALENLMQNRTTFVIAHRLSTIKNASRIVVVKKGKIVEEGS 554
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB8_MOUSE (ATP-binding cassette sub-family B member 8, mitochondrial OS=Mus musculus GN=Abcb8 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18 Identity = 57/220 (25.91%), Postives = 114/220 (51.82%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTR-LSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G I +++ Y F VL+ + P K +VG++G GK+T+ L R +P A R + + I Q+PV+F T+ N+ + + +DE+++ A + + + + V E G S GQ+Q + + R L+K+ +L+LDEAT+++D ++ ++Q++L + + TV+ IAHR+++V + ++++++G + E Sbjct: 452 GSITFQNVTFSYPCRPGFNVLKDFTLKLPSGKIVALVGQSGGGKTTVASLLERFYDPEAGSVTLDGHDLRTLNPSWLRGQVIGFISQEPVLFATTIMENIRFGKLDASDEEVYTAAREANAHEFISSFPDGYSTVVGERGTTLSGGQKQRLAIARALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAHRLSTVRAAHSIIVMANGQVCE 671
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB8B_ARATH (Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18 Identity = 59/225 (26.22%), Postives = 111/225 (49.33%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 G+I+L+++ Y P+ P VLR S G+VG +G GKST+I + R + R +++ Q+PV++ G+++ N+ E T++++ EA D + E ++ E G S GQ+Q + + R L+ IL+LDE T+S+D+ ++ +Q +L + + + T + +AHR+ ++ + D + L+ G + E S Sbjct: 996 GRIELKNIDFSY-PNRPSILVLRDFSLDIKPGTSIGLVGTSGCGKSTVIALIQRFYDVEIGCVKIDSENLRDINIKWYRKHTALVSQEPVVYSGSIQDNIILGRPEATEDEVVEAAKAANAHDFISAMEKGYKTECGERGVQLSGGQKQRIAIARAFLRSPIILLLDEVTSSLDSNSEQEVQDALARIMASRNMTTVVVAHRLNTLKNLDCIALIVDGTVIETGS 1219 HSP 2 Score: 80.4925 bits (197), Expect = 9.561e-15 Identity = 47/203 (23.15%), Postives = 99/203 (48.77%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 +L+ + T + ++G +GSGKST+I L R +P R + ++ QD +F ++ N+ + + +++ A + + D+ + G S GQ+Q + + R +++ IL+LDEAT+++D ++ LIQ +L Q + T + +AH++++V ++++ +L +G + E S Sbjct: 377 ILKDFTLTVDVGQSVALMGASGSGKSTVIALLQRFYDPCEGFVRIDGFDIKTLQLKWMRQHIGVVSQDHALFGTSIMENLMFGKNKASMDEVISAAKAANAHGFITQLPNGYDTHIGNRGALLSGGQKQRIAIARAIIRNPVILLLDEATSALDGESETLIQNALDQVAAGRTTLVVAHKLSTVRGANIIAMLENGSVRELGS 579
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAGC_DICDI (Serine protease/ABC transporter B family protein tagC OS=Dictyostelium discoideum GN=tagC PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17 Identity = 62/223 (27.80%), Postives = 114/223 (51.12%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTR--LSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEE 687 G+I+ +++ RY P P V L I+ F K G+VG +GSGKSTL++ + + P R ++ + Q+P +F+ +++ N+ L+ T E++ EA + ++ + D+ + G S GQ++ + + R + +RKI++LDE TA +D ++ I QS++ TV+ +AH++ +V D D + +L G L+EE Sbjct: 1448 GEIEFKNVSFRY-PTRPDVQVLHNINMKFETGKCYGLVGPSGSGKSTLLELISKFY-PLRDGGNIIMDDIDIANIRPNNLRGFVTCVHQNPYLFDASIKDNIGYALDNPTIEEVIEAAKLAYAHEFIKDLPQQYDTVLGSAGSLLSGGQKKRIAIARAICAKRKIMLLDEITAELDPESEEAITQSIKVLTQGHTVVMVAHKVAAVRDCDKIFVLDKGYLVEE 1668
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAGA_DICDI (Serine protease/ABC transporter B family protein tagA OS=Dictyostelium discoideum GN=tagA PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17 Identity = 53/200 (26.50%), Postives = 96/200 (48.00%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 VL I F T ++G +G GKST++ + R+ +SI+ Q+P +F G++ N+ T +I EA + D + D+ + E G S GQ+Q + + R ++K +L+LDE T+ +D ++ L+Q S+ + TVI +AHR+T+++ +D++ ++S I E Sbjct: 1391 VLEKIDIKFEPGTITALIGPSGGGKSTMLSLIGRLYNIDGGSITLDGTNIKDFNVPNLHEHISIVNQEPSLFSGSIAENIMFGKPTATRSEIIEACKQANAHDFITAMPEGYDTLIGERGTALSGGQKQRIAIARTIIKNPTVLLLDETTSELDVESEKLVQDSIDKLVVGRTVIIVAHRLTTILTADIIAVVSDSTISE 1590
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSYCK (Lipid A export ATP-binding/permease protein msbA OS=Psychrobacter cryohalolentis (strain K5) GN=msbA PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17 Identity = 60/219 (27.40%), Postives = 107/219 (48.86%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+I L ++ + Y P L + + +VGR+G+GKS+L+ L R + ++ R +++++ Q V+F TV +N+ L T ++ +A D + + S++ G S GQRQ + + R LLK IL+LDEAT+++D ++ IQ++L + T + IAHR+T++ +D + +L G I E Sbjct: 358 GEIKLDNVSLVY-PDSTVALHDFNLDIRAGETVALVGRSGAGKSSLVNLLTRTLTTSSGQITLDGMPIEDIKLESLRAQIAMVNQQVVLFNTTVFNNIAYGSLAHKTPAEVEQAAKDAFAHDFIMQMPNGYQSEIGAEGLQLSGGQRQRLSIARALLKDAPILILDEATSALDNESEYYIQKALDNIMKNRTTLVIAHRLTTIESADRIAVLDGGQIVE 575
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CYDC_ECOLI (ATP-binding/permease protein cydC OS=Escherichia coli (strain K12) GN=cydC PE=3 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17 Identity = 61/216 (28.24%), Postives = 104/216 (48.15%), Query Frame = 1 Query: 43 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 + LRD+Q Y L+GIS + I+GRTG GKSTL+Q L R +P R +S++PQ +F T+R N+ +DE + E L + +G E ++ L+S + E G S G+ + + + R LL +++LDE T +D T++ I + L + + TV+ + HR+ + ++++ +G I E Sbjct: 339 LTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRR--VGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIE 552
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHESR (Lipid A export ATP-binding/permease protein msbA OS=Shewanella sp. (strain MR-7) GN=msbA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17 Identity = 56/186 (30.11%), Postives = 98/186 (52.69%), Query Frame = 1 Query: 139 IVGRTGSGKSTLIQTLFRIVEPA-AXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE--EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +VGR+GSGKST+ + R + R++++++ Q +F T+ +N+ E T EQI +A + + + LD++V ENG S GQRQ + + R +L+ +L+LDEAT+++DT ++ IQQ L + T + IAHR++++ +D +L++ G I E Sbjct: 392 LVGRSGSGKSTIASLVTRFYTGLESGDIKLDDVSIYDYSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEATREQIIQAATLAHAMEFIEQLPEGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVE 577 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |