FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB6_XENTR (ATP-binding cassette sub-family B member 6, mitochondrial OS=Xenopus tropicalis GN=abcb6 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.384e-27
Identity = 71/218 (32.57%), Postives = 118/218 (54.13%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            GKI+  ++   Y      +LR IS T    +   +VG +GSGKST+I+ LFR  +                     R+ + ++PQD V+F  T+R+N+       TD+++ EA     + + +       D++  E G   S G++Q V + R +LK  +I++LDEAT+++DT T+  IQ SL +  ++ T I +AHR+++VI+SD +L+L  G I E
Sbjct:  579 GKIEFENVHFSYLDGKE-ILRDISFTVMPGQSIALVGPSGSGKSTIIRLLFRFYDVKGGTIKVDGQDISTVRQESLRSHIGVVPQDTVLFNDTIRNNIRYGRVSATDDEVEEAAAAADIHERILSFRDGYDTQTGERGLKLSGGEKQRVAIARTILKAPQIILLDEATSALDTETERNIQASLAKVCANRTTIVVAHRLSTVINSDQILVLKEGQIVE 795          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB7B_ARATH (ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.089e-26
Identity = 69/220 (31.36%), Postives = 121/220 (55.00%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSN-VDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I+LRD+  RY P  P V    G S T P      +VG++GSGKST+I  + R  +P +                  R+++ ++ Q+P++F  T+R N V   ++ +D++I  AL      + + K    L++ V E+G   S GQ+Q + + R +LK  KIL+LDEAT+++D  ++ ++Q +L +     T + +AHR+T++  +DM+ ++  G + E
Sbjct:  355 GDIELRDVYFRY-PARPDVQIFVGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGEVLIDGIDLKKFQVKWIRSKIGLVSQEPILFATTIRENIVYGKKDASDQEIRTALKLANASNFIDKLPQGLETMVGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRLTTIRTADMIAVVQQGKVIE 573          

HSP 2 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 65/222 (29.28%), Postives = 117/222 (52.70%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            HG I+L+ +  RY P  P +     +  T    +   +VG +GSGKST+I  L R  +P +                  R ++ ++ Q+PV+F  T+ SN+    +   T+E+I  A     + + +       ++ V E G   S GQ+Q + + R +LK  KIL+LDEAT+++D  ++ ++Q +L Q   + T + +AH +T++ D+DM+ ++ +G+I E
Sbjct: 1002 HGDIELQHVSFRY-PMRPDIQIFSDLCLTISSGQTVALVGESGSGKSTVISLLERFYDPDSGKILLDQVEIQSLKLSWLREQMGLVSQEPVLFNETIGSNIAYGKIGGATEEEIITAAKAANVHNFISSLPQGYETSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQDALDQVMVNRTTVVVAHLLTTIKDADMIAVVKNGVIAE 1222          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ATM1_YEAST (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Saccharomyces cerevisiae GN=ATM1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.404e-26
Identity = 65/202 (32.18%), Postives = 113/202 (55.94%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +L+  S T P   KT IVG +GSGKST+++ +FR  +P +                  R  + ++PQD  +F  T+  NV     + TDE++   ++K QL   ++K     D+ V E G   S G++Q + + RVLLK  +I+  DEAT+++DT T+  + +++R +F+    T + IAHR+ ++ D+D +++L +G + E
Sbjct:  451 ILKNASFTIPAGWKTAIVGSSGSGKSTILKLVFRFYDPESGRILINGRDIKEYDIDALRKVIGVVPQDTPLFNDTIWENVKFGRIDATDEEVITVVEKAQLAPLIKKLPQGFDTIVGERGLMISGGEKQRLAIARVLLKNARIMFFDEATSALDTHTEQALLRTIRDNFTSGSRTSVYIAHRLRTIADADKIIVLDNGRVRE 652          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ATM1_NEUCR (Iron-sulfur clusters transporter atm-1, mitochondrial OS=Neurospora crassa GN=atm-1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.572e-25
Identity = 71/225 (31.56%), Postives = 115/225 (51.11%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD-------NLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I+ +D+   Y P  P +LR +S T P  KK  IVG +G GKSTL++ LFR  +P                    R  + ++PQD  +F  TV  N+       T EQ+ EA     + +++       ++KV E G   S G++Q + + R++LK   +L  DEAT+++DT T+       N I + L Q     T + +AHR+ ++ DSD++++L  G + E
Sbjct:  447 GEIEFKDVTFGYHPESP-ILRDLSLTIPAGKKVAIVGPSGCGKSTLLRLLFRFYDPQKGAIYIDGQDIRSVTLESLRRAIGVVPQDTPLFNDTVEHNIRYGNLSATPEQVIEAAKAAHIHEKIISWRDGYNTKVGERGLMISGGEKQRLAVSRLILKDPPLLFFDEATSALDTHTEQALMENINAILKGLGQKGEKKTSLFVAHRLRTIYDSDLIIVLKEGRVAE 670          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ATM1_CANGA (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Candida glabrata GN=ATM1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.572e-25
Identity = 66/202 (32.67%), Postives = 110/202 (54.46%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +L+  S T P   KT I G +GSGKST+++ +FR  +P                    R  + ++PQD  +F  T+  NV     E +DE+I   +DK QL D + K      + V E G   S G++Q + + RVLLK   I+  DEAT+++DT T+  + +++R++F+  + T + IAHR+ ++ D+D +++L  G + E
Sbjct:  480 ILKNASFTIPAGMKTAIAGPSGSGKSTVLKLVFRFYDPEEGRVLVNGVDVREYDIDQLRKAIGVVPQDTPLFNDTIWENVKFGRIEASDEEITRVIDKAQLSDLIAKLPQGSSTIVGERGLMISGGEKQRLAIARVLLKDADIMFFDEATSALDTHTEQSLLRTIRRNFNSGEKTSVYIAHRLRTIADADKIIVLEEGTVRE 681          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDR1_LEIEN (Multidrug resistance protein 1 OS=Leishmania enriettii GN=MDR1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 73/222 (32.88%), Postives = 117/222 (52.70%), Query Frame = 1
Query:   43 IDLRDLQVRYAPH-MPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            I+ R++Q  Y+      VL  ++  F      G++G+TG GKST+IQ L R  E  +                  R  +SI+ Q+P +F GTVR N+    E  TDE++ EA     +  E+ K     D++V   G   S GQ+Q + + R LL+R ++L+LDEAT+++D+ T+  +Q+ +   Q     T ++IAHR+T++   D ++LL  G I E  S
Sbjct: 1036 IEYRNVQFIYSARPKQVVLASVNMRFGDATSNGLIGQTGCGKSTVIQMLARFYERRSGLISVNGRDLSSLDIAEWRRNISIVLQEPNLFSGTVRENIRYAREGATDEEVEEAARLAHIHHEIIKWTDGYDTEVGYKGRALSGGQKQRIAIARGLLRRPRLLLLDEATSALDSVTEAKVQEGIEAFQAKYKVTTVSIAHRLTTIRHCDQIILLDSGCIIEQGS 1257          

HSP 2 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 61/214 (28.50%), Postives = 105/214 (49.07%), Query Frame = 1
Query:   43 IDLRDLQVRYAPHMPFVL-RGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSH 672
            I+ R+++  Y      +L R +S      +K    G +G GKS++I  + R  +P                    R ++ I+ Q+P +F GT+  NV   +   TDE++ EA  +  + D +     + D+ V   G   S GQ+Q + + R L+KR  IL+LDEAT+++D  ++  +Q +L Q       TV+ IAHR+ ++ D D +  + H
Sbjct:  391 IEFRNVRFAYPTRPGMILFRDLSLKIKCGQKVAFSGASGCGKSSVIGLIQRFYDPIGGAVLVDGVRMRELCLREWRDQIGIVSQEPNLFAGTMMENVRMGKPNATDEEVVEACRQANIHDTIMALPDRYDTPVGPVGSLLSGGQKQRIAIARALVKRPPILLLDEATSALDRKSEMEVQAALDQLIQRGGTTVVVIAHRLATIRDMDRIYYVKH 604          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: EXP8_STRPN (Putative ABC transporter ATP-binding protein exp8 OS=Streptococcus pneumoniae GN=exp8 PE=3 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 65/199 (32.66%), Postives = 108/199 (54.27%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +L  IS +    +    VG TGSGKS++I  L R  E  +                  R  + ++ Q+P ++ GT++SN+   +E +DEQ+  A         +++     DS V+E G ++S GQRQL+   R +  + KIL+LDEATA++D+ T++L+Q SL +     T I IAHR++++ D++ + +L  G I E
Sbjct:  356 ILDDISFSVNKGETIAFVGHTGSGKSSIINVLMRFYEFQSGRVLLDDVDIRDFSQEELRKNIGLVLQEPFLYHGTIKSNIAMYQETSDEQVQAAAAFVDADSFIQELPQGYDSPVSERGSSFSTGQRQLLAFARTVASQPKILILDEATANIDSETESLVQASLAKMRQGRTTIAIAHRLSTIQDANCIYVLDKGRIIE 554          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ATM1_KLULA (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Kluyveromyces lactis GN=ATM1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 66/202 (32.67%), Postives = 112/202 (55.45%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDC--TVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +L+  + T    KKT IVG +GSGKST+++ +FR  +P                    R  + ++PQD  +F  T+  NV       TD +I  A++K QL D + K     ++ V E G   S G++Q + + RVLLK   I+  DEAT+++DT T+  + ++++++FSD   T + IAHR+ ++ D+D +++L +G + E
Sbjct:  471 ILKNATFTIAPGKKTAIVGPSGSGKSTILRLVFRFYDPQQGRILLDGKDIRELDLDELRRIVGVVPQDTPLFNDTIWENVKFGRINATDNEIVTAIEKAQLSDLIHKLPKGTETIVGERGLMISGGEKQRLAIARVLLKDTPIMFFDEATSALDTHTEQSLLKTIKENFSDVAKTSVYIAHRLRTIADADKIIVLENGAVRE 672          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCBA_MOUSE (ATP-binding cassette sub-family B member 10, mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 69/224 (30.80%), Postives = 119/224 (53.12%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690
            G ++ R++   Y P  P   V +  S + P    T +VG +GSGKST++  L R+ +P +                  R+++  + Q+PV+F  +V  N+    D L   T +Q+  A +     + +R      D+ V E G   S GQ+Q + + R LLK  KIL+LDEAT+++D   ++L+Q++L +     TV+ IAHR++++ +++ V +L HG I E+
Sbjct:  455 GALEFRNVHFTY-PARPEVSVFQDFSLSIPSGSVTALVGPSGSGKSTVVSLLLRLYDPNSGTVSLDGHDIRQLNPVWLRSKIGTVSQEPVLFSCSVAENIAYGADNLSSVTAQQVERAAEVANAAEFIRSFPQGFDTVVGEKGILLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEHLVQEALDRLMEGRTVLIIAHRLSTIKNANFVAVLDHGKICEH 677          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BORA1 (Lipid A export ATP-binding/permease protein msbA OS=Bordetella avium (strain 197N) GN=msbA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 72/223 (32.29%), Postives = 116/223 (52.02%), Query Frame = 1
Query:   28 PSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690
            P  GKI+ R +  R+       +  +S T    +   +VGR+GSGK+TL+  L R V P                    R+ LS++ QD V+F+ T+ +NV    L +  D++I +AL    L D V      + + V EN    S GQRQ + + R L+K   IL+LDEAT+++D  ++  +Q SL +     T + IAHR+++V ++D +++L  G I E+
Sbjct:  345 PVRGKIEFRQIGHRFPEADRNTISDVSFTVEPGQTVALVGRSGSGKTTLVNMLPRFVLPTEGSILIDDVPINDVQLNSLRSHLSLVSQDVVLFDDTIAANVGYGALGKADDQRIHDALAAANLRDFVDSLPKGIHTPVGENAARLSGGQRQRLAIARALIKNAPILILDEATSALDNESERQVQSSLDRLMRGRTTLVIAHRLSTVQNADRIIVLDAGRIVEH 567          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
ABCB6_XENTR6.384e-2732.57ATP-binding cassette sub-family B member 6, mitoch... [more]
AB7B_ARATH1.089e-2631.36ABC transporter B family member 7 OS=Arabidopsis t... [more]
ATM1_YEAST5.404e-2632.18Iron-sulfur clusters transporter ATM1, mitochondri... [more]
ATM1_NEUCR1.572e-2531.56Iron-sulfur clusters transporter atm-1, mitochondr... [more]
ATM1_CANGA1.572e-2532.67Iron-sulfur clusters transporter ATM1, mitochondri... [more]
MDR1_LEIEN2.054e-2532.88Multidrug resistance protein 1 OS=Leishmania enrie... [more]
EXP8_STRPN2.054e-2532.66Putative ABC transporter ATP-binding protein exp8 ... [more]
ATM1_KLULA2.054e-2532.67Iron-sulfur clusters transporter ATM1, mitochondri... [more]
ABCBA_MOUSE2.054e-2530.80ATP-binding cassette sub-family B member 10, mitoc... [more]
MSBA_BORA12.682e-2532.29Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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