FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ATM1_ASHGO (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Ashbya gossypii GN=ATM1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 72/234 (30.77%), Postives = 123/234 (52.56%), Query Frame = 1
Query:    4 KSRPN-HSWPSHGKIDLR--DLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            K+ PN  + P H  +D+R  ++   Y P    +L  +S T P   KT IVG +GSGKST+++ +FR  EP                    R  + ++PQD  +F  T+  NV       +D++I  A++K QL   ++       + V E G   S G++Q + + RVLLK   ++  DEAT+++DT T+  +  +++Q+FS    T + +AHR+ ++ D+D +++L  G + E
Sbjct:  419 KNSPNAQNLPIHKPLDIRFENVTFGYDPERR-ILNNVSFTIPAGMKTAIVGPSGSGKSTILKLVFRFYEPEQGRILVGGTDIRDLDLLSLRKAIGVVPQDTPLFNDTIWENVKFGNISSSDDEILRAIEKAQLTKLLQNLPKGASTVVGERGLMISGGEKQRLAIARVLLKDAPLMFFDEATSALDTHTEQALLHTIQQNFSSNSKTSVYVAHRLRTIADADKIIVLEQGSVRE 651          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB5_DICDI (ABC transporter B family member 5 OS=Dictyostelium discoideum GN=abcB5 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 69/217 (31.80%), Postives = 114/217 (52.53%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 675
            +G I  RD+  +Y   +  VL  +S    G K+  IVG +GSGKSTL++ L+R  + ++                  R  + ++PQD V+F  T+  N+   +P    T EQ+  A     + + +   +   D+ V E G   S G++Q V + R +LK   I+  DEAT+S+DT  + LI  +LR+ F   T I IAHR+++++D+D +++L  G
Sbjct:  457 NGTIVFRDISFKYNDSVQ-VLNNVSFECEGGKRIAIVGSSGSGKSTLLRLLYRFYDVSSGSIEIDGQDIRGIQLESLRKHIGVVPQDTVLFNDTIYYNIAYGNP--NATKEQVENAARAAHIHEVILNMKNGYDTVVGERGLKLSGGEKQRVSIARAILKDSPIVFYDEATSSLDTEKEKLIMDALRELFKGRTTIMIAHRLSTIVDADEIIVLGTG 670          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB1_DICDI (ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 69/220 (31.36%), Postives = 123/220 (55.91%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I+L+D++  Y P  P   VL+G++        T +VG +G GKST+I  + R  +P +                  R  +  + Q+PV+F G+++ N+    +  T +QI  A +K      + + E   D+ V E G   S GQ+Q V + R +++   IL+LDEAT+++D  ++ L++Q++ +   D TVI IAHR+++VI+++ V++++ G IEE
Sbjct:  664 GEIELKDVEFSY-PTRPNNSVLKGLNLKLSKGTITALVGPSGGGKSTVIAMIERFYDPNSGSITFDGIDIKELDPVWYRGIIGYVSQEPVLFAGSIKDNITFGNDSATMDQIISAAEKANAHSFIEEFENGYDTIVGERGVRLSGGQKQRVAIARAMIQNPMILLLDEATSALDAESEYLVKQAIDEIMKDRTVIVIAHRLSTVINANTVVVINQGKIEE 882          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB24B_ARATH (ABC transporter B family member 24, mitochondrial OS=Arabidopsis thaliana GN=ABCB24 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 69/218 (31.65%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I   ++   Y P    +L GIS   P  K   IVG +GSGKST+++ +FR  +  +                  R+ + ++PQD V+F  T+  N+       T+E+++ A  +  + D + K   K  + V E G   S G++Q V L R  LK   IL+ DEAT+++D+ T+  I ++LR   S+ T I IAHR+T+ +  D +L++  G + E
Sbjct:  437 GSISFENVHFSYLPERK-ILDGISFEVPAGKSVAIVGSSGSGKSTILRMIFRFFDVDSGNVKIDGQDIKEVRLESLRSSIGVVPQDTVLFNDTIFHNIHYGNLSATEEEVYNAARRAAIHDTIMKFPDKYSTAVGERGLMLSGGEKQRVALARAFLKSPAILLCDEATSALDSKTEAEIMKTLRSLASNRTCIFIAHRLTTAMQCDEILVMEKGKVVE 653          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB4B_ARATH (ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 67/223 (30.04%), Postives = 121/223 (54.26%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPF--VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G I+L+D+   Y P  P   + RG S          +VG++GSGKST++  + R  +P A                  R+++ ++ Q+PV+F  +++ N+    E+ T E+I  A +       V K    LD+ V E+G   S GQ+Q + + R +LK  +IL+LDEAT+++D  ++ ++Q++L +   + T + +AHR+++V ++DM+ ++  G I E  S
Sbjct:  382 GDIELKDVYFTY-PARPDEQIFRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSKIGLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGS 603          

HSP 2 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 59/221 (26.70%), Postives = 118/221 (53.39%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE--EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I+LR +  +Y P  P V   + +  +    K   +VG +GSGKST+I  L R  +P +                  R +  ++ Q+P++F  T+R+N+   +  + ++ +I  + +       +   +   D+ V E G   S GQ+Q V + R ++K  K+L+LDEAT+++D  ++ ++Q +L +   + T I +AHR++++ ++D++ ++ +G+I E
Sbjct: 1040 GDIELRHVSFKY-PARPDVQIFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKSLRLKWLRQQTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQGYDTMVGERGIQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIVE 1259          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LMRA_LACLA (Multidrug resistance ABC transporter ATP-binding and permease protein OS=Lactococcus lactis subsp. lactis GN=lmrA PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 65/199 (32.66%), Postives = 104/199 (52.26%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            +LR IS            G +G GKST+   L R  +P A                  R+++  + QD  +  GT+R N+   LE +YTDE +W+ LD       V     +L+++V E G   S GQRQ + + R  L+  KILMLDEATAS+D+ +++++Q++L       T + IAHR+++++D+D +  +  G I
Sbjct:  364 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQI 562          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ATM1_DEBHA (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Debaryomyces hansenii GN=ATM1 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 68/220 (30.91%), Postives = 120/220 (54.55%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD--CTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I   ++   Y P  P +L+  S T P  +K  IVG +GSGKST+++ +FR  +  +                  R  + I+PQD  +F  T+  N+     + TD++I E +DK QL   +      +++ V E G   S G++Q + + R+LLKR  I + DEAT+++DT T+  + +++R+  +    T I IAHR+ ++ D+D +++L+ G ++E
Sbjct:  436 GEIKFENVTFGYHPDRP-ILQNASFTIPAGEKIAIVGPSGSGKSTILRLIFRFYDVESGKIFIDGQDISKVTVESLRRSIGIVPQDTPLFNDTILENIRYGRLDATDKEIHEMIDKVQLTKLIEDSPNGVNTIVGERGMMISGGEKQRLAIARLLLKRAPITLFDEATSALDTHTEQSLLRTIRKVLTKKANTHIAIAHRLRTIADADKIIVLNKGQVQE 654          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCBB_RABIT (Bile salt export pump OS=Oryctolagus cuniculus GN=ABCB11 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 72/233 (30.90%), Postives = 120/233 (51.50%), Query Frame = 1
Query:    7 SRPNHSWPS-HGKIDLRDLQVRYAPHMPF--VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            S     W +  GKID  D +  Y P  P   VL G+S +    +    VG +G GKST IQ L R  +P                    R+ + I+ Q+PV+F  +++ N+   D  +E   E+I  A  K Q+ D V     K ++ V   G   S G++Q + + R +++  KIL+LDEAT+++DT ++  +Q +L +     T I IAHR++++ +SD++ ++S G++ E
Sbjct: 1065 SSAGEKWDNFQGKIDFVDCKFTY-PSRPDIQVLNGLSVSMSPRQTLAFVGSSGCGKSTSIQLLERFYDPDHGKVMIDGHDSRKVNIQFLRSNIGIVSQEPVLFACSIKDNIKYGDNTQEIPMERIIAAAKKAQVHDFVMSLPEKYETNVGSQGSQLSRGEKQRIAIARAIVRDPKILLLDEATSALDTESEKTVQVALDKAREGRTCIVIAHRLSTIQNSDIIAVMSQGMVIE 1296          

HSP 2 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 59/220 (26.82%), Postives = 110/220 (50.00%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I+  ++   Y P  P V  L  +S      + T +VG +G+GKST +Q + R   P                    R ++ I+ Q+PV+F  T+   +    E+ T E + +A  +    + +     + D+ V E G   S GQ+Q V + R L++  KIL+LD AT+++D  ++ ++Q++L +     T++++AHR  ++  +D+++   HG   E
Sbjct:  418 GEIEFHNVTFHY-PSRPEVKILNNLSMVIKPGEMTALVGPSGAGKSTALQLIHRFYGPTEGMVTVESHDIRSSHIQWLRNQIGIVEQEPVLFFHTIAEKIRYGREDATMEDLIQAAKEANAYNFIMDLPQQFDTLVGEGGGQMSGGQKQRVAIARALIRNPKILLLDMATSALDNESEAMVQEALSKTQHGHTIVSVAHRPATIRTADVIIGCEHGAAVE 636          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB7_MOUSE (ATP-binding cassette sub-family B member 7, mitochondrial OS=Mus musculus GN=Abcb7 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 65/200 (32.50%), Postives = 106/200 (53.00%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            VL G+S   P  KK  IVG +GSGKST+++ LFR  EP                    R  + ++PQD V+F  T+  N+       + E+++       L D + +     D++V E G   S G++Q V + R +LK   +++ DEAT+S+D+ T+  I  ++R      T I IAHR+++V+D+D +++LS G + E
Sbjct:  487 VLNGVSFEVPAGKKVAIVGGSGSGKSTIVRLLFRFYEPQKGSIYLAGQNLQDVSLESLRRAVGVVPQDAVLFHNTIYYNLLYGNINASPEEVYAVAKLAGLHDAILRMPHGYDTQVGERGLKLSGGEKQRVAIARAILKNPPVILYDEATSSLDSITEETILGAMRDVVKHRTSIFIAHRLSTVVDADEIIVLSQGKVAE 686          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_HAEIN (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus influenzae GN=msbA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 64/222 (28.83%), Postives = 115/222 (51.80%), Query Frame = 1
Query:   28 PSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            P+ G+++ +++   Y       L  IS + P  K   +VGR+GSGKST+   + R  +                     R   +++ Q   +F  T+ +N+     ++Y+ E+I  A       + + K     D+ + ENG + S GQRQ + + R LL+   +L+LDEAT+++DT ++  IQ +L +   D TV+ IAHR++++ ++D +L++ HG I E
Sbjct:  342 PAKGELEFKNVSFAYQGKDELALNNISFSVPAGKTVALVGRSGSGKSTIANLVTRFYDIEQGEILLDGVNIQDYRLSNLRENCAVVSQQVHLFNDTIANNIAYAAQDKYSREEIIAAAKAAYALEFIEKLPQVFDTVIGENGTSLSGGQRQRLAIARALLRNSPVLILDEATSALDTESERAIQSALEELKKDRTVVVIAHRLSTIENADEILVIDHGEIRE 563          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
ATM1_ASHGO2.682e-2530.77Iron-sulfur clusters transporter ATM1, mitochondri... [more]
ABCB5_DICDI2.682e-2531.80ABC transporter B family member 5 OS=Dictyostelium... [more]
ABCB1_DICDI2.682e-2531.36ABC transporter B family member 1 OS=Dictyostelium... [more]
AB24B_ARATH3.503e-2531.65ABC transporter B family member 24, mitochondrial ... [more]
AB4B_ARATH4.575e-2530.04ABC transporter B family member 4 OS=Arabidopsis t... [more]
LMRA_LACLA5.975e-2532.66Multidrug resistance ABC transporter ATP-binding a... [more]
ATM1_DEBHA5.975e-2530.91Iron-sulfur clusters transporter ATM1, mitochondri... [more]
ABCBB_RABIT5.975e-2530.90Bile salt export pump OS=Oryctolagus cuniculus GN=... [more]
ABCB7_MOUSE5.975e-2532.50ATP-binding cassette sub-family B member 7, mitoch... [more]
MSBA_HAEIN7.803e-2528.83Lipid A export ATP-binding/permease protein msbA O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
back to top