FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ATM1_YARLI (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Yarrowia lipolytica GN=ATM1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 68/220 (30.91%), Postives = 116/220 (52.73%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            ++G+I   ++   Y P  P +L+  S   PG  KT IVG +GSGKST+++  FR  +                     R+ + ++PQD  +F  ++ +N+     E  D+++  A    +L   VR+     ++ V E G   S G++Q + + RVLLK   ++ LDEAT+++DT T+  +  ++ Q   D T + IAHR+ +V DSD ++ L+ G +EE
Sbjct:  449 TNGEIRFENVTYGYHPDRP-ILKNASFVIPGGLKTAIVGPSGSGKSTILKLAFRFYDTQEGRILIDGQDVREVTLASLRSAIGVVPQDTPLFNDSIMNNIRFGRLEADDKEVENAACAAKLDALVRQLPDGWNTNVGERGMMISGGEKQRLAVARVLLKNSPVVFLDEATSALDTNTERQLLANMDQVLGDKTCVAIAHRLRTVADSDKIICLNQGGVEE 667          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: YHEH_BACSU (Probable multidrug resistance ABC transporter ATP-binding/permease protein yheH OS=Bacillus subtilis GN=yheH PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 73/218 (33.49%), Postives = 113/218 (51.83%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+++ RD+   Y      VL+ IS T    +   +VG TGSGKS+++  LFR  +                     R+ + I+ QDP +F GT+ SNV   +E  T+E+I  AL +      ++K    ++  V E G   S G+RQL+   R L     IL+LDEATA +DT T+ +IQ++L       T   IAHR++++ ++D +L+L  G I E
Sbjct:  428 GRVEFRDVSFAYQEGEE-VLKHISFTAQKGETVALVGHTGSGKSSILNLLFRFYDAQKGDVLIDGKSIYNMSRQELRSHMGIVLQDPYLFSGTIGSNVSLDDERMTEEEIKNALRQVGAEPLLKKLPKGINEPVIEKGSTLSSGERQLISFARALAFDPAILILDEATAHIDTETEAVIQKALDVVKQGRTTFVIAHRLSTIRNADQILVLDKGEIVE 644          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB25B_ARATH (ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABCB25 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 68/218 (31.19%), Postives = 113/218 (51.83%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I+  ++   Y P    +L GIS   P  K   IVG +GSGKST+++ LFR  +  +                  R+ + ++PQD V+F  T+  N+       T+E+++EA  +  + + +     K  + V E G   S G++Q V L R  LK   IL+ DEAT+++D+ T+  I  +L+   S+ T I IAHR+T+ +  D +++L +G + E
Sbjct:  477 GNIEFENVHFSYLPERK-ILDGISFVVPAGKSVAIVGTSGSGKSTILRMLFRFFDTDSGNIRIDGQDIKEVRLDSLRSSIGVVPQDTVLFNDTIFHNIHYGRLSATEEEVYEAARRAAIHETISNFPDKYSTIVGERGLKLSGGEKQRVALARTFLKSPAILLCDEATSALDSTTEAEILNALKALASNRTSIFIAHRLTTAMQCDEIVVLENGKVVE 693          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: YKNV_BACSU (Uncharacterized ABC transporter ATP-binding protein yknV OS=Bacillus subtilis GN=yknV PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.331e-24
Identity = 69/227 (30.40%), Postives = 114/227 (50.22%), Query Frame = 1
Query:    4 KSRPN--HSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 675
            K +PN  H+   +G+I   +++  Y       L  +S + P      +VG TGSGK+T+   + R  + A                   R+++SI+ QD  +F GT+  N+       +DE++ +A       + +        ++V E G   S GQRQL+   R LL    I++LDEATAS+DT T+  IQQ+L+      T + IAHR++++ D+D +++L HG
Sbjct:  348 KEKPNAIHNEKINGEISFEEVEFSYDEKRK-ALHAVSFSIPAGSTLALVGHTGSGKTTIANLISRFYDAAGGTIKIDGIPIKDLSLASLRSQISIVLQDTFIFSGTIMENIRFGRPNASDEEVMKASQAVGADEFISDLAEGYATEVEERGSVLSAGQRQLISFARALLADPAIIILDEATASIDTETEVKIQQALKTLLKGRTAVMIAHRLSTIRDADRIIVLDHG 573          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1303_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1303c OS=Mycobacterium bovis GN=Mb1303c PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.331e-24
Identity = 68/218 (31.19%), Postives = 117/218 (53.67%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+++   +   Y P  P V+R +S          IVG TG+GK+TL+  L R  E  +                  R+R+ ++ QD  +++GT+  N+     E T ++I EA     +   V        ++V+ +G + S+G++QL+ + R  L R ++L+LDEAT+SVDT T+ LIQ+++R+   D T   IAHR++++ D+D +L++  G I E
Sbjct:  395 GRVEFEHVNFAYLPGTP-VIRDLSLVAEPGSTVAIVGPTGAGKTTLVNLLMRFYEIGSGRILIDGVDIASVSRQSLRSRIGMVLQDTWLYDGTIAENIAYGRPEATTDEIVEAARAAHVDRFVNTLPAGYQTRVSGDGGSISVGEKQLITIARAFLARPQLLILDEATSSVDTRTELLIQRAMRELRRDRTSFIIAHRLSTIRDADHILVVQTGQIVE 611          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1272_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1272c/MT1310 OS=Mycobacterium tuberculosis GN=Rv1272c PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.331e-24
Identity = 68/218 (31.19%), Postives = 117/218 (53.67%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+++   +   Y P  P V+R +S          IVG TG+GK+TL+  L R  E  +                  R+R+ ++ QD  +++GT+  N+     E T ++I EA     +   V        ++V+ +G + S+G++QL+ + R  L R ++L+LDEAT+SVDT T+ LIQ+++R+   D T   IAHR++++ D+D +L++  G I E
Sbjct:  395 GRVEFEHVNFAYLPGTP-VIRDLSLVAEPGSTVAIVGPTGAGKTTLVNLLMRFYEIGSGRILIDGVDIASVSRQSLRSRIGMVLQDTWLYDGTIAENIAYGRPEATTDEIVEAARAAHVDRFVNTLPAGYQTRVSGDGGSISVGEKQLITIARAFLARPQLLILDEATSSVDTRTELLIQRAMRELRRDRTSFIIAHRLSTIRDADHILVVQTGQIVE 611          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_HAEI8 (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus influenzae (strain 86-028NP) GN=msbA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.331e-24
Identity = 65/222 (29.28%), Postives = 114/222 (51.35%), Query Frame = 1
Query:   28 PSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            P+ G ++ +++   Y       L  IS + P  K   +VGR+GSGKST+   + R  +                     R   +++ Q   +F  T+ +N+     ++Y+ E+I  A       + + K     D+ + ENG + S GQRQ + + R LL+   +L+LDEAT+++DT ++  IQ +L +   D TVI IAHR++++ ++D +L++ HG I E
Sbjct:  342 PAKGALEFKNVSFAYQGKEELALNNISFSVPAGKTVALVGRSGSGKSTIANLVTRFYDIEQGEILLDGVNIQDYRLSNLRENCAVVSQQVHLFNDTIANNIAYAAQDKYSREEIIAAAKAAYALEFIEKLPQGFDTVIGENGASLSGGQRQRLAIARALLRNSPVLILDEATSALDTESERAIQSALDELKKDRTVIVIAHRLSTIENADEILVIDHGEIRE 563          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB7_RAT (ATP-binding cassette sub-family B member 7, mitochondrial OS=Rattus norvegicus GN=Abcb7 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.331e-24
Identity = 65/200 (32.50%), Postives = 106/200 (53.00%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            VL G+S   P  KK  IVG +GSGKST+++ LFR  EP                    R  + ++PQD V+F  T+  N+       + E+++       L D + +     D++V E G   S G++Q V + R +LK   +++ DEAT+S+D+ T+  I  ++R      T I IAHR+++V+D+D +++LS G + E
Sbjct:  487 VLSGVSFEVPAGKKVAIVGGSGSGKSTIVRLLFRFYEPQKGSIYLAGQNIQDVSLESLRRAVGVVPQDAVLFHNTIYYNLLYGNINASPEEVYAVAKLAGLHDAILRMPHGYDTQVGERGLKLSGGEKQRVAIARAILKDPPVILYDEATSSLDSITEETILGAMRDVVKHRTSIFIAHRLSTVVDADEIIVLSQGKVAE 686          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVY (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus (strain YJ016) GN=msbA PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24
Identity = 66/222 (29.73%), Postives = 117/222 (52.70%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G+++++D+   Y       L  +S   P  K   +VGR+GSGKST+     R  +  +                  RT+ +++ Q+  +F  T+ +N+     ++Y+ E I  A +     + + K E  LD+ V ENG + S GQRQ V + R LL+   +L+LDEAT+++DT ++  IQ +L +   + TV+ IAHR++++  +D +L++  G + E  S
Sbjct:  340 GEVNVKDISFTYEGAEKPALSHVSFDIPRGKTVALVGRSGSGKSTIANLFTRFYDVDSGEIQLDGVDVRDYELKNLRTQFALVSQNVHLFNDTIANNIAYAAGDKYSREDIERAAELAHAMEFISKMENGLDTVVGENGASLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGAVVERGS 561          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVU (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus GN=msbA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24
Identity = 66/222 (29.73%), Postives = 117/222 (52.70%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G+++++D+   Y       L  +S   P  K   +VGR+GSGKST+     R  +  +                  RT+ +++ Q+  +F  T+ +N+     ++Y+ E I  A +     + + K E  LD+ V ENG + S GQRQ V + R LL+   +L+LDEAT+++DT ++  IQ +L +   + TV+ IAHR++++  +D +L++  G + E  S
Sbjct:  340 GEVNVKDISFTYEGAEKPALSHVSFDIPRGKTVALVGRSGSGKSTIANLFTRFYDVDSGEIQLDGVDVRDYELKNLRTQFALVSQNVHLFNDTIANNIAYAAGDKYSREDIERAAELAHAMEFISKMENGLDTMVGENGASLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGSVVERGS 561          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
ATM1_YARLI7.803e-2530.91Iron-sulfur clusters transporter ATM1, mitochondri... [more]
YHEH_BACSU1.019e-2433.49Probable multidrug resistance ABC transporter ATP-... [more]
AB25B_ARATH1.019e-2431.19ABC transporter B family member 25, mitochondrial ... [more]
YKNV_BACSU1.331e-2430.40Uncharacterized ABC transporter ATP-binding protei... [more]
Y1303_MYCBO1.331e-2431.19Uncharacterized ABC transporter ATP-binding protei... [more]
Y1272_MYCTU1.331e-2431.19Uncharacterized ABC transporter ATP-binding protei... [more]
MSBA_HAEI81.331e-2429.28Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB7_RAT1.331e-2432.50ATP-binding cassette sub-family B member 7, mitoch... [more]
MSBA_VIBVY1.738e-2429.73Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_VIBVU1.738e-2429.73Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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