FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PHOLL (Lipid A export ATP-binding/permease protein msbA OS=Photorhabdus luminescens subsp. laumondii GN=msbA PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23 Identity = 68/221 (30.77%), Postives = 118/221 (53.39%), Query Frame = 1 Query: 31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 ++G I+ R++ Y L+ IS P K +VGR+GSGKST+ L R + R +++++ Q+ +F TV +N+ E Y+ E+I +A + D +RK + LD+ + ENG S GQRQ + + R LL+ +L+LDEAT+++DT ++ IQ +L + + T + IAHR++++ ++D +L++ G I E Sbjct: 337 ANGDIEFRNVTFCYPTKELPALQNISMYIPAGKIVALVGRSGSGKSTIANLLTRFYDVNEGNIFLDGHDLREYKLSSLRGQVALVSQNVHLFNDTVANNIAYASENRYSREEIEKAAEMAYAMDFIRKLDNGLDTMIGENGVLLSGGQRQRIAIARALLRDSPVLILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIENADEILVVEDGHIVE 557
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LMRA_LACLM (Multidrug resistance ABC transporter ATP-binding and permease protein OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=lmrA PE=3 SV=3) HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23 Identity = 63/199 (31.66%), Postives = 102/199 (51.26%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681 +L IS G +G GKST+ L R +P A R+++ + QD + GT+R N+ LE +TDE +W+ LD V +L+++V E G S GQRQ + + R L+ KILMLDEATAS+D+ +++++Q++L T + IAHR+++++D+D + + G I Sbjct: 364 ILHDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIGGQPIDSVSLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGNFTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQRALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGEI 562
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCBB_MOUSE (Bile salt export pump OS=Mus musculus GN=Abcb11 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23 Identity = 69/222 (31.08%), Postives = 117/222 (52.70%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPF--VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 GKID D + Y P P VL G+S + + VG +G GKST IQ L R +P R+ + I+ Q+PV+F+ ++ N+ D +E + E+ A + QL D V K ++ V G S G++Q + + R +++ KIL+LDEAT+++DT ++ +Q +L + T I IAHR++++ +SD++ ++S G++ E Sbjct: 1076 GKIDFIDCKFTY-PSRPDIQVLNGLSVSVDPGQTLAFVGSSGCGKSTSIQLLERFYDPDQGTVMIDGHDSKKVNVQFLRSNIGIVSQEPVLFDCSIMDNIKYGDNTKEISVERAIAAAKQAQLHDFVMSLPEKYETNVGIQGSQLSRGEKQRIAIARAIVRDPKILLLDEATSALDTESEKTVQLALDKAREGRTCIVIAHRLSTIQNSDIIAVMSQGVVIE 1296 HSP 2 Score: 100.908 bits (250), Expect = 6.836e-21 Identity = 64/220 (29.09%), Postives = 111/220 (50.45%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+I+ ++ Y P P V L +S + T VG +G+GKST +Q + R +P R ++ I+ Q+PV+F T+ N+ EE T E I +A + + + D+ V E G S GQ+Q V + R L+++ KIL+LD AT+++D ++ +Q +L + T+I++AHR+++V +D+++ HG E Sbjct: 418 GEIEFHNVTFHY-PSRPEVKILNNLSMVIKPGETTAFVGSSGAGKSTALQLIQRFYDPCEGMVTLDGHDIRSLNIRWLRDQIGIVEQEPVLFSTTIAENIRLGREEATMEDIVQAAKDANAYNFIMALPQQFDTLVGEGGGQMSGGQKQRVAIARALIRKPKILLLDMATSALDNESEAKVQGALNKIQHGHTIISVAHRLSTVRSADVIIGFEHGTAVE 636
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB5_HUMAN (ATP-binding cassette sub-family B member 5 OS=Homo sapiens GN=ABCB5 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23 Identity = 63/222 (28.38%), Postives = 122/222 (54.95%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y P P F+LRG+S + K VG +G GKST +Q L R+ +P R++++I+PQ+PV+F ++ N+ D ++I EA + + + K +++V G S GQ+Q + + R LL++ KIL+LDEAT+++D ++ ++Q +L + + T + + HR++++ ++D++++L +G I+E Sbjct: 568 GNLEFREVSFFY-PCRPDVFILRGLSLSIERGKTVAFVGSSGCGKSTSVQLLQRLYDPVQGQVLFDGVDAKELNVQWLRSQIAIVPQEPVLFNCSIAENIAYGDNSRVVPLDEIKEAANAANIHSFIEGLPEKYNTQVGLKGAQLSGGQKQRLAIARALLQKPKILLLDEATSALDNDSEKVVQHALDKARTGRTCLVVTHRLSAIQNADLIVVLHNGKIKE 788 HSP 2 Score: 87.0409 bits (214), Expect = 1.022e-16 Identity = 42/142 (29.58%), Postives = 85/142 (59.86%), Query Frame = 1 Query: 265 RTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 R + ++ Q+PV+F T+ +N+ ++ TDE++ A + D + + K ++ V E G S GQ+Q + + R L++ KIL+LDEAT+++D+ + + +Q +L + T I +AHR++++ +D+++ L G++ E Sbjct: 16 RDHIGVVSQEPVLFGTTISNNIKYGRDDVTDEEMERAAREANAYDFIMEFPNKFNTLVGEKGAQMSGGQKQRIAIARALVRNPKILILDEATSALDSESKSAVQAALEKASKGRTTIVVAHRLSTIRSADLIVTLKDGMLAE 157
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y019_MYCPN (Putative ABC transporter ATP-binding protein MG015 homolog OS=Mycoplasma pneumoniae GN=MPN_019 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23 Identity = 63/218 (28.90%), Postives = 116/218 (53.21%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDP-LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G I + Y+ P +L GI + IVG TG+GKST+I L + +P A R ++SI+ QDP +F GT++ N+ ++ TDE+I EA D + + ++ ++ + S+G+RQL+ + R +++ +L+LDEAT+S+D ++ LIQQS+ + D T I+HR++ + ++ ++++++ G + E Sbjct: 395 GNIRFEKVVFGYSADKP-ILTGIDFSVKHGDIVAIVGPTGAGKSTIINLLMKFYKPFAGKIYMDNFEISEVSETAWREKISIVLQDPFLFSGTIKENIRMGRQDATDEEIIEACKVANAHDFIMRLPQGYNTFISNKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSSIDVHSEKLIQQSIGRLMKDKTSFIISHRLSIIRNATLIIVINDGKVLE 611
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PASMU (Lipid A export ATP-binding/permease protein msbA OS=Pasteurella multocida GN=msbA PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23 Identity = 66/222 (29.73%), Postives = 115/222 (51.80%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 G + +++ Y LR +S K +VGR+GSGKST+ + R + R +++ Q +F T+ +N+ ++Y+ E+I +A + + K E LD+ + ENG N S GQRQ + + R LL+ +L+LDEAT+++DT ++ IQ +L + + TVI IAHR++++ ++D +L++ HG I+E S Sbjct: 340 GYLSFKNVTFTYQSRDEPALRNLSFDVEKGKTVALVGRSGSGKSTIANLVTRFYDVDQGEITLDGINIQDYRLSSLRKNCAVVSQQVHLFNDTIANNIAYAAKDKYSREEIIKAAKDAYAMEFIEKLEHGLDTVIGENGVNLSGGQRQRLAIARALLRNSPVLILDEATSALDTESERSIQLALEKLQKERTVIVIAHRLSTIENADEILVIEHGEIKERGS 561
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_NEIMB (Lipid A export ATP-binding/permease protein msbA OS=Neisseria meningitidis serogroup B GN=msbA PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23 Identity = 67/218 (30.73%), Postives = 110/218 (50.46%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+I R++ V Y L + ++ +VGR+GSGKST++ L R VEP+A R + +++ QD +F+ T+ NV E ++ AL L + L + NG N S GQRQ V + R +LK IL+LDEAT+++D ++ L+QQ+L + + T I +AHR+T++ +D ++++ G I E Sbjct: 374 GRISFRNVDVEYRSDGIKALDNFNLDIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLRAQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLFALQTANLQSLIDSSPLGLHQPIGSNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIE 591
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_FRANO (Lipid A export ATP-binding/permease protein msbA OS=Francisella novicida GN=msbA PE=3 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23 Identity = 61/219 (27.85%), Postives = 113/219 (51.60%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G + ++DL + H VL G+S + VG++GSGK+TL + R R+ LSI+ Q+ +F+ TV +N+ E +++++ +AL + + V++ + + + NG S GQRQ + + R LLK +L+ DEAT+++D ++ ++QQ+L CT I IAHR+++V ++D ++++ G + E Sbjct: 349 GNVTIKDLSFAFGEHK--VLSGVSVDIKAGQTVAFVGKSGSGKTTLTSIISRFYTQHKGEILLDGVDTRELTLENLRSHLSIVSQNVHLFDDTVYNNIAFGLSREVSEDEVIDALKRANAYEFVQELSDGIHTNIGNNGSKLSGGQRQRISIARALLKNAPVLIFDEATSALDNESERVVQQALESLTESCTTIVIAHRLSTVENADKIVVMDGGKVVE 565
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y288_THEMA (Uncharacterized ABC transporter ATP-binding protein TM_0288 OS=Thermotoga maritima GN=TM_0288 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23 Identity = 69/218 (31.65%), Postives = 115/218 (52.75%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+I+ +++ Y P VL+ I+ +K +VG TGSGK+T++ L R + R+ + I+ QD ++F TV+ N+ TDE+I EA ++ ++ +T+NGE+ S GQRQL+ + R L KIL+LDEAT++VDT T+ IQ ++ + T I IAHR+ ++ ++D++++L G I E Sbjct: 353 GEIEFKNVWFSYDKKKP-VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE 569
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_THICR (Lipid A export ATP-binding/permease protein msbA OS=Thiomicrospira crunogena (strain XCL-2) GN=msbA PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23 Identity = 62/219 (28.31%), Postives = 113/219 (51.60%), Query Frame = 1 Query: 34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +G+ID ++ Y L S + P K T +VG++GSGK+TL + R + R ++ + Q+ V+F T+ +N+ EEY ++ I A + + K L++ + +NG S GQRQ + + R LK IL++DEAT+++D ++ LIQ+++ + TVI IAHR++++ ++D +++L G ++E Sbjct: 336 NGQIDFNNVSFSYLGTEKTALNNFSLSIPARKTTALVGQSGSGKTTLANLITRFYQVNHGTITIDGIALDEIELNNLRANIAFVSQNVVLFNDTIAANIAYGHEEYDEQAIMNAAKAAHAWEFIEKLPEGLNTIIGDNGTLLSGGQRQRLAIARAFLKNAPILIMDEATSALDNQSEKLIQEAMNSLRKNRTVIIIAHRLSTIENADKIVVLEEGSLKE 554 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |