FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PHOLL (Lipid A export ATP-binding/permease protein msbA OS=Photorhabdus luminescens subsp. laumondii GN=msbA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 68/221 (30.77%), Postives = 118/221 (53.39%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            ++G I+ R++   Y       L+ IS   P  K   +VGR+GSGKST+   L R  +                     R +++++ Q+  +F  TV +N+    E  Y+ E+I +A +     D +RK +  LD+ + ENG   S GQRQ + + R LL+   +L+LDEAT+++DT ++  IQ +L +   + T + IAHR++++ ++D +L++  G I E
Sbjct:  337 ANGDIEFRNVTFCYPTKELPALQNISMYIPAGKIVALVGRSGSGKSTIANLLTRFYDVNEGNIFLDGHDLREYKLSSLRGQVALVSQNVHLFNDTVANNIAYASENRYSREEIEKAAEMAYAMDFIRKLDNGLDTMIGENGVLLSGGQRQRIAIARALLRDSPVLILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIENADEILVVEDGHIVE 557          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LMRA_LACLM (Multidrug resistance ABC transporter ATP-binding and permease protein OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=lmrA PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 63/199 (31.66%), Postives = 102/199 (51.26%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            +L  IS            G +G GKST+   L R  +P A                  R+++  + QD  +  GT+R N+   LE  +TDE +W+ LD       V     +L+++V E G   S GQRQ + + R  L+  KILMLDEATAS+D+ +++++Q++L       T + IAHR+++++D+D +  +  G I
Sbjct:  364 ILHDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIGGQPIDSVSLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGNFTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQRALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGEI 562          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCBB_MOUSE (Bile salt export pump OS=Mus musculus GN=Abcb11 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 69/222 (31.08%), Postives = 117/222 (52.70%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPF--VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            GKID  D +  Y P  P   VL G+S +    +    VG +G GKST IQ L R  +P                    R+ + I+ Q+PV+F+ ++  N+   D  +E + E+   A  + QL D V     K ++ V   G   S G++Q + + R +++  KIL+LDEAT+++DT ++  +Q +L +     T I IAHR++++ +SD++ ++S G++ E
Sbjct: 1076 GKIDFIDCKFTY-PSRPDIQVLNGLSVSVDPGQTLAFVGSSGCGKSTSIQLLERFYDPDQGTVMIDGHDSKKVNVQFLRSNIGIVSQEPVLFDCSIMDNIKYGDNTKEISVERAIAAAKQAQLHDFVMSLPEKYETNVGIQGSQLSRGEKQRIAIARAIVRDPKILLLDEATSALDTESEKTVQLALDKAREGRTCIVIAHRLSTIQNSDIIAVMSQGVVIE 1296          

HSP 2 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 64/220 (29.09%), Postives = 111/220 (50.45%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I+  ++   Y P  P V  L  +S      + T  VG +G+GKST +Q + R  +P                    R ++ I+ Q+PV+F  T+  N+    EE T E I +A       + +     + D+ V E G   S GQ+Q V + R L+++ KIL+LD AT+++D  ++  +Q +L +     T+I++AHR+++V  +D+++   HG   E
Sbjct:  418 GEIEFHNVTFHY-PSRPEVKILNNLSMVIKPGETTAFVGSSGAGKSTALQLIQRFYDPCEGMVTLDGHDIRSLNIRWLRDQIGIVEQEPVLFSTTIAENIRLGREEATMEDIVQAAKDANAYNFIMALPQQFDTLVGEGGGQMSGGQKQRVAIARALIRKPKILLLDMATSALDNESEAKVQGALNKIQHGHTIISVAHRLSTVRSADVIIGFEHGTAVE 636          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB5_HUMAN (ATP-binding cassette sub-family B member 5 OS=Homo sapiens GN=ABCB5 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 63/222 (28.38%), Postives = 122/222 (54.95%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ R++   Y P  P  F+LRG+S +    K    VG +G GKST +Q L R+ +P                    R++++I+PQ+PV+F  ++  N+   D       ++I EA +   +   +     K +++V   G   S GQ+Q + + R LL++ KIL+LDEAT+++D  ++ ++Q +L +  +  T + + HR++++ ++D++++L +G I+E
Sbjct:  568 GNLEFREVSFFY-PCRPDVFILRGLSLSIERGKTVAFVGSSGCGKSTSVQLLQRLYDPVQGQVLFDGVDAKELNVQWLRSQIAIVPQEPVLFNCSIAENIAYGDNSRVVPLDEIKEAANAANIHSFIEGLPEKYNTQVGLKGAQLSGGQKQRLAIARALLQKPKILLLDEATSALDNDSEKVVQHALDKARTGRTCLVVTHRLSAIQNADLIVVLHNGKIKE 788          

HSP 2 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 42/142 (29.58%), Postives = 85/142 (59.86%), Query Frame = 1
Query:  265 RTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            R  + ++ Q+PV+F  T+ +N+    ++ TDE++  A  +    D + +   K ++ V E G   S GQ+Q + + R L++  KIL+LDEAT+++D+ + + +Q +L +     T I +AHR++++  +D+++ L  G++ E
Sbjct:   16 RDHIGVVSQEPVLFGTTISNNIKYGRDDVTDEEMERAAREANAYDFIMEFPNKFNTLVGEKGAQMSGGQKQRIAIARALVRNPKILILDEATSALDSESKSAVQAALEKASKGRTTIVVAHRLSTIRSADLIVTLKDGMLAE 157          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y019_MYCPN (Putative ABC transporter ATP-binding protein MG015 homolog OS=Mycoplasma pneumoniae GN=MPN_019 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 63/218 (28.90%), Postives = 116/218 (53.21%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDP-LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I    +   Y+   P +L GI  +        IVG TG+GKST+I  L +  +P A                  R ++SI+ QDP +F GT++ N+    ++ TDE+I EA       D + +     ++ ++   +  S+G+RQL+ + R +++   +L+LDEAT+S+D  ++ LIQQS+ +   D T   I+HR++ + ++ ++++++ G + E
Sbjct:  395 GNIRFEKVVFGYSADKP-ILTGIDFSVKHGDIVAIVGPTGAGKSTIINLLMKFYKPFAGKIYMDNFEISEVSETAWREKISIVLQDPFLFSGTIKENIRMGRQDATDEEIIEACKVANAHDFIMRLPQGYNTFISNKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSSIDVHSEKLIQQSIGRLMKDKTSFIISHRLSIIRNATLIIVINDGKVLE 611          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PASMU (Lipid A export ATP-binding/permease protein msbA OS=Pasteurella multocida GN=msbA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 66/222 (29.73%), Postives = 115/222 (51.80%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G +  +++   Y       LR +S      K   +VGR+GSGKST+   + R  +                     R   +++ Q   +F  T+ +N+     ++Y+ E+I +A       + + K E  LD+ + ENG N S GQRQ + + R LL+   +L+LDEAT+++DT ++  IQ +L +   + TVI IAHR++++ ++D +L++ HG I+E  S
Sbjct:  340 GYLSFKNVTFTYQSRDEPALRNLSFDVEKGKTVALVGRSGSGKSTIANLVTRFYDVDQGEITLDGINIQDYRLSSLRKNCAVVSQQVHLFNDTIANNIAYAAKDKYSREEIIKAAKDAYAMEFIEKLEHGLDTVIGENGVNLSGGQRQRLAIARALLRNSPVLILDEATSALDTESERSIQLALEKLQKERTVIVIAHRLSTIENADEILVIEHGEIKERGS 561          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_NEIMB (Lipid A export ATP-binding/permease protein msbA OS=Neisseria meningitidis serogroup B GN=msbA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 67/218 (30.73%), Postives = 110/218 (50.46%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I  R++ V Y       L   +      ++  +VGR+GSGKST++  L R VEP+A                  R + +++ QD  +F+ T+  NV        E ++  AL    L   +      L   +  NG N S GQRQ V + R +LK   IL+LDEAT+++D  ++ L+QQ+L +   + T I +AHR+T++  +D ++++  G I E
Sbjct:  374 GRISFRNVDVEYRSDGIKALDNFNLDIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLRAQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLFALQTANLQSLIDSSPLGLHQPIGSNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIE 591          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_FRANO (Lipid A export ATP-binding/permease protein msbA OS=Francisella novicida GN=msbA PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 61/219 (27.85%), Postives = 113/219 (51.60%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G + ++DL   +  H   VL G+S      +    VG++GSGK+TL   + R                        R+ LSI+ Q+  +F+ TV +N+      E +++++ +AL +    + V++    + + +  NG   S GQRQ + + R LLK   +L+ DEAT+++D  ++ ++QQ+L      CT I IAHR+++V ++D ++++  G + E
Sbjct:  349 GNVTIKDLSFAFGEHK--VLSGVSVDIKAGQTVAFVGKSGSGKTTLTSIISRFYTQHKGEILLDGVDTRELTLENLRSHLSIVSQNVHLFDDTVYNNIAFGLSREVSEDEVIDALKRANAYEFVQELSDGIHTNIGNNGSKLSGGQRQRISIARALLKNAPVLIFDEATSALDNESERVVQQALESLTESCTTIVIAHRLSTVENADKIVVMDGGKVVE 565          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y288_THEMA (Uncharacterized ABC transporter ATP-binding protein TM_0288 OS=Thermotoga maritima GN=TM_0288 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 69/218 (31.65%), Postives = 115/218 (52.75%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I+ +++   Y    P VL+ I+      +K  +VG TGSGK+T++  L R  +                     R+ + I+ QD ++F  TV+ N+       TDE+I EA         ++      ++ +T+NGE+ S GQRQL+ + R  L   KIL+LDEAT++VDT T+  IQ ++ +     T I IAHR+ ++ ++D++++L  G I E
Sbjct:  353 GEIEFKNVWFSYDKKKP-VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE 569          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_THICR (Lipid A export ATP-binding/permease protein msbA OS=Thiomicrospira crunogena (strain XCL-2) GN=msbA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 62/219 (28.31%), Postives = 113/219 (51.60%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +G+ID  ++   Y       L   S + P  K T +VG++GSGK+TL   + R  +                     R  ++ + Q+ V+F  T+ +N+    EEY ++ I  A       + + K    L++ + +NG   S GQRQ + + R  LK   IL++DEAT+++D  ++ LIQ+++     + TVI IAHR++++ ++D +++L  G ++E
Sbjct:  336 NGQIDFNNVSFSYLGTEKTALNNFSLSIPARKTTALVGQSGSGKTTLANLITRFYQVNHGTITIDGIALDEIELNNLRANIAFVSQNVVLFNDTIAANIAYGHEEYDEQAIMNAAKAAHAWEFIEKLPEGLNTIIGDNGTLLSGGQRQRLAIARAFLKNAPILIMDEATSALDNQSEKLIQEAMNSLRKNRTVIIIAHRLSTIENADKIVVLEEGSLKE 554          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MSBA_PHOLL1.472e-2330.77Lipid A export ATP-binding/permease protein msbA O... [more]
LMRA_LACLM1.472e-2331.66Multidrug resistance ABC transporter ATP-binding a... [more]
ABCBB_MOUSE1.472e-2331.08Bile salt export pump OS=Mus musculus GN=Abcb11 PE... [more]
ABCB5_HUMAN1.472e-2328.38ATP-binding cassette sub-family B member 5 OS=Homo... [more]
Y019_MYCPN1.922e-2328.90Putative ABC transporter ATP-binding protein MG015... [more]
MSBA_PASMU1.922e-2329.73Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_NEIMB1.922e-2330.73Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_FRANO1.922e-2327.85Lipid A export ATP-binding/permease protein msbA O... [more]
Y288_THEMA2.510e-2331.65Uncharacterized ABC transporter ATP-binding protei... [more]
MSBA_THICR2.510e-2328.31Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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