FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHEFN (Lipid A export ATP-binding/permease protein msbA OS=Shewanella frigidimarina (strain NCIMB 400) GN=msbA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 63/220 (28.64%), Postives = 108/220 (49.09%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIV-EPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE--EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            GK+   ++   Y       L GI+      K   +VGR+GSGKST+   + R   + +                   R +++++ Q   +F  T+ +N+      E T EQI  A +     + +      LD++V ENG   S GQRQ + + R +L+   +L+LDEAT+++DT ++  IQ+ L     + T I IAHR++++  +D +L++  G I E
Sbjct:  357 GKLAFDNVTFAYPGQEKSALNGINFEVKPGKTVALVGRSGSGKSTIASLITRFYGDLSTGDIRLDDTSIYDYQLKSLRNQVALVSQQVTLFNDTIANNIAYAYPGEVTREQIVHAAELAYAMEFIDTLPEGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQKGLDNLRHNRTSIVIAHRLSTIESADEILVIDQGKIVE 576          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: PEDD_PEDAC (Pediocin PA-1 transport/processing ATP-binding protein pedD OS=Pediococcus acidilactici GN=pedD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 63/225 (28.00%), Postives = 109/225 (48.44%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXX--RTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +G I++  +   Y  +   +L  +S T P  +K  IVG +GSGK+TL + L    EP                      R  ++ +PQ+P +F G+V  N+        T + I +A    ++  ++        ++++E+G N S GQ+Q + + R LL   +  + DE+T+++DT T++ I   L     D T+I +AHR+     +D V++L HG I E  S
Sbjct:  483 NGDIEVNHVSFNYG-YCSNILEDVSLTIPHHQKITIVGMSGSGKTTLAKLLVGFFEPQEQHGEIQINHHNISDISRTILRQYINYVPQEPFIFSGSVLENLLLGSRPGVTQQMIDQACSFAEIKTDIENLPQGYHTRLSESGFNLSGGQKQRLSIARALLSPAQCFIFDESTSNLDTITEHKIVSKL-LFMKDKTIIFVAHRLNIASQTDKVVVLDHGKIVEQGS 705          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_BRUSU (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Brucella suis GN=ndvA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 61/194 (31.44%), Postives = 98/194 (50.52%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDP-LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            PG+    IVG TG+GK+TLI  L R+ +PAA                  R  ++ + QD  +F  +V  N+       T E++  A       D +  K    D+ V E G   S G+RQ + + R +LK   IL+LDEAT+++D  T+  ++Q++ +   + T   IAHR+++V  +D+VL +  G + E  S
Sbjct:  360 PGQT-VAIVGPTGAGKTTLINLLQRVFDPAAGRIMIDGTDTRTVSRRSLRHAIATVFQDAGLFNRSVEDNIRVGRANATHEEVHAAAKAAAAHDFILAKSEGYDTFVGERGSQLSGGERQRLAIARAILKDSPILVLDEATSALDVETEEKVKQAVDELSHNRTTFIIAHRLSTVRSADLVLFMDKGHLVESGS 552          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPH (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=msbA PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 57/203 (28.08%), Postives = 103/203 (50.74%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +L  ++          +VG +GSGK+T+   L R  E +                   R ++S++ Q+  +F  T+ +N+     + + EQI  A       + +++     D++V ENG   S GQRQ + + R +LK   IL+LDEAT+++D+ +++ IQ +L Q     T + IAHR++++  +  +++L HG I E  S
Sbjct:  357 ILHDVNFVIEAGTSVALVGHSGSGKTTIASLLPRFYELSQGMITLDGMPIQQLSLESLRKQMSLVSQNVTLFNDTLANNIAYGRFDASREQIITAAKLAYADEFIKQLPDGYDTRVGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQGS 559          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPA (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila (strain Paris) GN=msbA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 57/203 (28.08%), Postives = 103/203 (50.74%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +L  ++          +VG +GSGK+T+   L R  E +                   R ++S++ Q+  +F  T+ +N+     + + EQI  A       + +++     D++V ENG   S GQRQ + + R +LK   IL+LDEAT+++D+ +++ IQ +L Q     T + IAHR++++  +  +++L HG I E  S
Sbjct:  357 ILHDVNFVIEAGTSVALVGHSGSGKTTIASLLPRFYELSQGMITLDGMPIQQLSLESLRKQISLVSQNVTLFNDTLANNIAYGRFDASREQIITAAKLAYADEFIKQLPDGYDTRVGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQGS 559          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA1_COLP3 (Lipid A export ATP-binding/permease protein msbA 1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=msbA1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 61/191 (31.94%), Postives = 97/191 (50.79%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            PGE    +VGR+GSGKST    L R  +                     R + S + Q  V+F  T+ +N+     E T+ +I EA     + +     E  L++ + ENG   S GQRQ V + R LL     L+LDEAT+++DT ++  IQ +L+    + T I IAHR++++ ++D ++++  G I E
Sbjct:  390 PGET-LALVGRSGSGKSTASSLLLRFYDATRGEILIDDTNIEQFQLKDLRKQFSYVSQQVVLFNDTLANNIAYGKPEATEAEIIEAAKSAHVMEFAEHMEQGLETNIGENGALLSGGQRQRVAIARALLCDTPFLILDEATSALDTESERHIQDALQTLQQNRTSIVIAHRLSTIENADKIIVMEQGKIVE 579          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAGB_DICDI (Serine protease/ABC transporter B family protein tagB OS=Dictyostelium discoideum GN=tagB PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 66/224 (29.46%), Postives = 112/224 (50.00%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKST---LIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEE 687
            G+I+ +++  RY P  P V  L  I+  F   K  G+VG +GSGKST   LI   + +                       R+ ++ + Q P +F+ T+  N+   ++  T E I EA       + +     K D+++ E G N S GQ++ + + R +  +RKI++LDE TA +D  ++  I QS++      TV+ +AH++ +V D D + +L  G L+EE
Sbjct: 1516 GEIEFKNVSFRY-PTRPDVQVLHNINMKFEAGKCYGLVGPSGSGKSTTLELISKFYPLHGETGGKIYMDGIDIAKIRPNNLRSFVTNVHQHPFLFDATIGENIGYAIDNPTQEDIIEAAKLAYAHEFINDLPKKYDTQIGEAG-NLSGGQKKRIAVARAICAKRKIMLLDEITAELDPESEEAITQSIKVLTQGHTVVMVAHKVAAVRDCDKIFVLEKGYLVEE 1737          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHILO (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium loti GN=ndvA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 57/197 (28.93%), Postives = 99/197 (50.25%), Query Frame = 1
Query:  100 GISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDP-LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+S      +   IVG TG+GK+TLI  L R+  P+                   R  ++ + QD  +   ++  N+     + ++ +I  A       D +  K G  D+ V E G   S G+RQ + + R +LK   IL+LDEAT+++D  T++ +++++ +   D T   IAHR+T+V D+D+V+ +  G + E
Sbjct:  353 GVSFEVQAGQTVAIVGPTGAGKTTLINLLQRVFSPSTGRILIDGIDTRTVTRKSLRHSIATVFQDAGLLNRSIEDNIRVGRADASNVEIHAAAVAAAAQDFILAKSGGYDTVVGERGGQLSGGERQRIAIARAVLKDAPILVLDEATSALDVETEDRVKEAIDELRRDRTTFIIAHRLTTVRDADLVVFMDKGRVVE 549          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_BRUME (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Brucella melitensis GN=ndvA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 61/194 (31.44%), Postives = 98/194 (50.52%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDP-LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            PG+    IVG TG+GK+TLI  L R+ +PAA                  R  ++ + QD  +F  +V  N+       T E++  A       D +  K    D+ V E G   S G+RQ + + R +LK   IL+LDEAT+++D  T+  ++Q++ +   + T   IAHR+++V  +D+VL +  G + E  S
Sbjct:  360 PGQT-VAIVGPTGAGKTTLINLLQRVFDPAAGRIMIDGTDTRTVSRRSLRHAIATVFQDAGLFNRSVEDNIRVGRANATHEEVHAAAKAAAAHDFILAKSEGYDTFVGERGSQLSGGERQRLAIARAILKDSPILVLDEATSALDVETEEKLKQAVDELSHNRTTFIIAHRLSTVRSADLVLFMDKGHLVESGS 552          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_BARQU (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella quintana GN=ndvA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 63/192 (32.81%), Postives = 101/192 (52.60%), Query Frame = 1
Query:  130 KTG----IVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV-DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEE 687
            KTG    IVG TG+GK+TLI  L R+ EP                    R  L+ + QD  +F  ++  N+       T+E+++EA       D + KK  + ++ V E G   S G++Q + + R +LK   IL+LDEAT+++D  T+  ++ +L     + T   IAHR+++V  +D+VL L +G LIE+
Sbjct:  359 KTGQTVAIVGPTGAGKTTLINLLQRVYEPTFGHISIDGINIRSINRESLRKSLATVFQDAGLFNRSIHDNILIGRATATNEELYEAAKIAAAHDFILKKTDRYNTMVGERGSQLSGGEKQRLAIARAVLKNAPILILDEATSALDVETEARVKDALDCISHNRTTFIIAHRLSTVRHADLVLFLENGHLIEK 550          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MSBA_SHEFN1.091e-1828.64Lipid A export ATP-binding/permease protein msbA O... [more]
PEDD_PEDAC1.425e-1828.00Pediocin PA-1 transport/processing ATP-binding pro... [more]
NDVA_BRUSU1.425e-1831.44Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_LEGPH1.425e-1828.08Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_LEGPA1.425e-1828.08Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA1_COLP31.425e-1831.94Lipid A export ATP-binding/permease protein msbA 1... [more]
TAGB_DICDI1.862e-1829.46Serine protease/ABC transporter B family protein t... [more]
NDVA_RHILO1.862e-1828.93Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_BRUME1.862e-1831.44Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_BARQU1.862e-1832.81Beta-(1-->2)glucan export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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