FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPL (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila (strain Lens) GN=msbA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 56/203 (27.59%), Postives = 104/203 (51.23%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +L  ++          +VG +GSGK+T+   L R  E +                   R ++S++ Q+  +F  T+ +N+     + + EQI  A       + +++     D++V ENG   S GQRQ + + R +LK   IL+LDEAT+++D+ +++ IQ +L Q  +  T + IAHR++++  +  ++++ HG I E  S
Sbjct:  357 ILHDVNFVIEAGTSVALVGHSGSGKTTIASLLPRFYELSQGMITLDGMPIQQLSLESLRKQMSLVSQNVTLFNDTLANNIAYGRFDASREQIITAAKLAYADEFIKQLPDGYDTRVGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMNGRTTLIIAHRLSTIKHAHKIIVMQHGRIVEQGS 559          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CYDC_HAEIN (ATP-binding/permease protein cydC OS=Haemophilus influenzae GN=cydC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 65/221 (29.41%), Postives = 113/221 (51.13%), Query Frame = 1
Query:   43 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGK-LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEEYD 693
            I  ++L   Y      VL+ ++      KK  I+G+TGSGKS+L+Q L R  +                     R ++  + Q   +F  T+R N+     ++ +DEQ+ E L +  L  ++ ++EGK L+  + + G   S G+++ + L R+LL    IL+LDE T  +D  T+  I + + QH  + T+I + HR++S+   D + ++ +G LIEE D
Sbjct:  338 ISAKNLNFSYPEQETLVLKNLTLDLEQGKKIAILGKTGSGKSSLLQLLVRNYDANQGELLLAEKPISAYSEETLRHQICFLTQRVHVFSDTLRQNLQFASADKISDEQMIEMLHQVGLS-KLLEQEGKGLNLWLGDGGRPLSGGEQRRLGLARILLNNASILLLDEPTEGLDRETERQILRLILQHAENKTLIIVTHRLSSIEQFDKICVIDNGRLIEEGD 557          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_BRUAB (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Brucella abortus GN=ndvA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 61/194 (31.44%), Postives = 97/194 (50.00%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDP-LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            PG+    IVG TG+GK+TLI  L R+ +PAA                  R  ++ + QD  +F  +V  N+       T E++  A       D +  K    D+ V E G   S G+RQ + + R +LK   IL+LDEAT+++D  T+  + Q++ +   + T   IAHR+++V  +D+VL +  G + E  S
Sbjct:  360 PGQT-VAIVGPTGAGKTTLINLLQRVFDPAAGRIMIDGTDTRTVSRRSLRHAIATVFQDAGLFNRSVEDNIRVGRANATHEEVHAAAKAAAAHDFILAKSEGYDTFVGERGSQLSGGERQRLAIARAILKDSPILVLDEATSALDVETEEKVTQAVDELSHNRTTFIIAHRLSTVRSADLVLFMDKGHLVESGS 552          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_BRUA2 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Brucella abortus (strain 2308) GN=ndvA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 61/194 (31.44%), Postives = 97/194 (50.00%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDP-LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            PG+    IVG TG+GK+TLI  L R+ +PAA                  R  ++ + QD  +F  +V  N+       T E++  A       D +  K    D+ V E G   S G+RQ + + R +LK   IL+LDEAT+++D  T+  + Q++ +   + T   IAHR+++V  +D+VL +  G + E  S
Sbjct:  360 PGQT-VAIVGPTGAGKTTLINLLQRVFDPAAGRIMIDGTDTRTVSRRSLRHAIATVFQDAGLFNRSVEDNIRVGRANATHEEVHAAAKAAAAHDFILAKSEGYDTFVGERGSQLSGGERQRLAIARAILKDSPILVLDEATSALDVETEEKVTQAVDELSHNRTTFIIAHRLSTVRSADLVLFMDKGHLVESGS 552          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_IDILO (Lipid A export ATP-binding/permease protein msbA OS=Idiomarina loihiensis GN=msbA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 63/219 (28.77%), Postives = 107/219 (48.86%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I   D+   Y       L  I+      K   +VGR+GSGKST+   L R  +                     R + +++ Q   +F  T+ +N+     ++ + E I +A ++  + +        LD+ V ENG   S GQRQ + + R LL+   IL+LDEAT+++DT ++  IQ +L     + T I IAHR++++ ++D +L++ +G I E
Sbjct:  338 GDIVFDDVTFSYQKDDEPALEHINFKVDQGKTVALVGRSGSGKSTISNLLTRFYDVEQGSILLDGHNINDYKLKCLRRQFALVSQHVTLFNDTIANNIAYGASKDVSRENIIKAAEQAYVTEFTDSMPKGLDTMVGENGVMLSGGQRQRIAIARALLQDAPILILDEATSALDTESERHIQDALGTLRKNRTAIVIAHRLSTIENADEILVMDNGEIIE 556          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BLOFL (Lipid A export ATP-binding/permease protein msbA OS=Blochmannia floridanus GN=msbA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 60/200 (30.00%), Postives = 101/200 (50.50%), Query Frame = 1
Query:   94 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            L  I+      K   +VGR+GSGKST++  L R  +                     R ++S++ Q+  +F  T+ +N+       Y+   I EA         + K +   D+ V ENG   S GQRQ + + R LL+   IL+LDEAT+S+DT ++ +I +S+     + T + IAHR++++ ++D +L++  G I E
Sbjct:  361 LCNINFNIESGKTIALVGRSGSGKSTIVNLLTRFYDVYQGRILLDGLNLNDYTLTSLREQVSVVTQNVYLFNDTIANNIAYARTRFYSRASIEEAAKMAYAMGFISKMKNGFDTIVGENGILLSNGQRQRIAIARALLRNCPILILDEATSSLDTESECIIYKSINILKKNRTSLIIAHRLSTIENADEILVVERGSIVE 560          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LCNCL_LACLA (Lactococcin transport/processing ATP-binding protein lcnC-like OS=Lactococcus lactis subsp. lactis GN=lcnC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 61/224 (27.23%), Postives = 114/224 (50.89%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            SH  +++ ++  +Y      VL  I  +    +K  IVG +GSGKSTL++ L    +P +                  R  ++ +PQ P +F G++  N+     E  + E+I  A++  ++  ++ + +    ++++ +  + S GQ+Q + L R LL   KIL+LDEAT+++D  T+  I ++L     D T+I IAHR++    S  ++++  G + E  S
Sbjct:  478 SHFNLNMSEISYQYGFGRK-VLSEIKLSIKENEKLTIVGISGSGKSTLVKLLVNFFQPTSGTITLGGIDLQQFDKHQLRRLINYLPQQPYIFTGSIMDNLLLGASEATSQEEIIRAVELAEIRADIEQMQLGYQTELSSDASSLSGGQKQRIALARALLSPAKILILDEATSNLDMITEKKILKNLLA--LDKTIIFIAHRLSVAEMSHRIIVIEQGKVIESGS 698          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB9_HUMAN (ATP-binding cassette sub-family B member 9 OS=Homo sapiens GN=ABCB9 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 60/223 (26.91%), Postives = 109/223 (48.88%), Query Frame = 1
Query:   28 PSH--GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            P H  G++D  ++   Y   PH   VL+ +S +    K T +VG +GSGKS+ +  L                             +S++ Q+PV+F  ++  N+   L     E + EA  K      + + +    ++  E G   S GQ+Q V + R L++   +L+LDEAT+++D  ++ LIQQ++  +    TV+ IAHR+++V  + ++++L  G +
Sbjct:  497 PDHLEGRVDFENVTFTYRTRPHTQ-VLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLEGGRVLLDGKPISAYDHKYLHRVISLVSQEPVLFARSITDNISYGLPTVPFEMVVEAAQKANAHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQKHTVLIIAHRLSTVEHAHLIVVLDKGRV 718          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MESD_LEUME (Mesentericin-Y105 transport/processing ATP-binding protein mesD OS=Leuconostoc mesenteroides GN=mesD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 57/197 (28.93%), Postives = 102/197 (51.78%), Query Frame = 1
Query:  103 ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +S T    +K  +VG +GSGKSTL++ L    +P +                  R  ++ +PQ+P +F G++  N+        T E I  A++  ++ D++ K      +++ E+G N S GQ+Q + L R +L    +L+LDE+T+++D  T+  I  +L +  ++ T+I +AHR+T     D +L +  G I E
Sbjct:  508 VSLTITAGEKIALVGISGSGKSTLVKLLVNFFQPESGTISLGPTPLANLDKHELRGHINYLPQEPFIFSGSIMENLLLGAKPGTTQEDIIRAVEIAEIKDDIEKMSQGFGTELAESG-NISGGQKQRIALARAILVDSPVLILDESTSNLDVLTEKKIIDNLMK-LTEKTIIFVAHRLTISQRVDRILTMQSGKIIE 702          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1383_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1383 OS=Mycobacterium bovis GN=Mb1383 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 63/207 (30.43%), Postives = 102/207 (49.28%), Query Frame = 1
Query:   70 YAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            Y P +P V++ +S T      T +VG +GSGKSTL   L R  +                      TR+  + Q+  +  GT   N+   + +   EQ+  A  + Q+ D V +     D+ +  N    S G+RQ + + R +L    +L+LDEATA  D  ++ L+QQ+L +   D TV+ IAHR+ ++  +D +++L HG I E
Sbjct:  619 YRPGVP-VIQDVSLTLRPGTVTALVGPSGSGKSTLATLLARFHDVERGAIRVGGQDIRSLAADELYTRVGFVLQEAQLVHGTAAENIALAVPDAPAEQVQVAAREAQIHDRVLRLPDGYDTVLGANS-GLSGGERQRLTIARAILGDTPVLILDEATAFADPESEYLVQQALNRLTRDRTVLVIAHRLHTITRADQIVVLDHGRIVE 823          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MSBA_LEGPL1.862e-1827.59Lipid A export ATP-binding/permease protein msbA O... [more]
CYDC_HAEIN1.862e-1829.41ATP-binding/permease protein cydC OS=Haemophilus i... [more]
NDVA_BRUAB2.431e-1831.44Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_BRUA22.431e-1831.44Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_IDILO2.431e-1828.77Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BLOFL2.431e-1830.00Lipid A export ATP-binding/permease protein msbA O... [more]
LCNCL_LACLA2.431e-1827.23Lactococcin transport/processing ATP-binding prote... [more]
ABCB9_HUMAN2.431e-1826.91ATP-binding cassette sub-family B member 9 OS=Homo... [more]
MESD_LEUME3.176e-1828.93Mesentericin-Y105 transport/processing ATP-binding... [more]
Y1383_MYCBO4.147e-1830.43Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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