FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_HAES1 (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus somnus (strain 129Pt) GN=msbA PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24 Identity = 69/222 (31.08%), Postives = 114/222 (51.35%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 G++ ++ Y+ L IS T P K +VGR+GSGKST+ + R + R +++ Q +F T+ +N+ E+ T EQI EA + + + K E LD+ + ENG + S GQRQ + + R LL+ +L+LDEAT+++DT ++ IQ +L D TV+ IAHR++++ +D +L++ G I+E S Sbjct: 340 GEVRFENVTFSYSGKEHPALNNISFTIPQGKTVALVGRSGSGKSTIANLVTRFYDVEQGKITLDGVNIQDYTLANLREHCAVVSQQVHLFNDTIANNIAYAVTEKCTREQIIEAAEAAYAMEFIEKLENGLDTVIGENGASLSGGQRQRLAIARALLRDSPVLILDEATSALDTESERAIQAALETLQKDRTVLVIAHRLSTIEKADEILVIEQGEIKERGS 561
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_FRATO (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=msbA PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24 Identity = 62/219 (28.31%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G + ++DL + H VL G+S + VG++GSGK+TL + R R+ LSI+ Q+ +F+ TV +N+ E ++E++ +AL + + V++ +++ + NG S GQRQ + + R LLK +L+ DEAT+++D ++ ++QQ+L CT I IAHR+++V ++D ++++ G++ E Sbjct: 370 GNVTIKDLSFAFGEHK--VLSGVSVDIKAGQTVAFVGKSGSGKTTLTSIISRFYTQHEGEILLDGVDTRELTLENLRSHLSIVSQNVHLFDDTVYNNIAFGLSREVSEEEVIDALKRANAYEFVQELSDGINTNIGNNGSKLSGGQRQRISIARALLKNAPVLIFDEATSALDNESERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGMVVE 586
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_FRATH (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. holarctica (strain LVS) GN=msbA PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24 Identity = 62/219 (28.31%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G + ++DL + H VL G+S + VG++GSGK+TL + R R+ LSI+ Q+ +F+ TV +N+ E ++E++ +AL + + V++ +++ + NG S GQRQ + + R LLK +L+ DEAT+++D ++ ++QQ+L CT I IAHR+++V ++D ++++ G++ E Sbjct: 370 GNVTIKDLSFAFGEHK--VLSGVSVDIKAGQTVAFVGKSGSGKTTLTSIISRFYTQHEGEILLDGVDTRELTLENLRSHLSIVSQNVHLFDDTVYNNIAFGLSREVSEEEVIDALKRANAYEFVQELSDGINTNIGNNGSKLSGGQRQRISIARALLKNAPVLIFDEATSALDNESERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGMVVE 586
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SALTY (Lipid A export ATP-binding/permease protein msbA OS=Salmonella typhimurium GN=msbA PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24 Identity = 68/219 (31.05%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + R +++++ Q+ +F TV +N+ EEY+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + + T + IAHR++++ +D ++++ G+I E Sbjct: 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SALTI (Lipid A export ATP-binding/permease protein msbA OS=Salmonella typhi GN=msbA PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24 Identity = 68/219 (31.05%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + R +++++ Q+ +F TV +N+ EEY+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + + T + IAHR++++ +D ++++ G+I E Sbjct: 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SALCH (Lipid A export ATP-binding/permease protein msbA OS=Salmonella choleraesuis GN=msbA PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24 Identity = 68/219 (31.05%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + R +++++ Q+ +F TV +N+ EEY+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + + T + IAHR++++ +D ++++ G+I E Sbjct: 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_NEIMA (Lipid A export ATP-binding/permease protein msbA OS=Neisseria meningitidis serogroup A GN=msbA PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24 Identity = 68/218 (31.19%), Postives = 111/218 (50.92%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+I R++ V Y L G + ++ +VGR+GSGKST++ L R VEP+A R + +++ QD +F+ T+ NV E ++ AL L + L + NG N S GQRQ V + R +LK IL+LDEAT+++D ++ L+QQ+L + + T I +AHR+T++ +D ++++ G I E Sbjct: 374 GRISFRNVDVEYRSDGIKALDGFNLDIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLRAQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLSALQAANLQSLIDASPLGLHQPIGSNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIE 591
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HMT1_SCHPO (Heavy metal tolerance protein OS=Schizosaccharomyces pombe GN=hmt1 PE=2 SV=3) HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24 Identity = 67/220 (30.45%), Postives = 116/220 (52.73%), Query Frame = 1 Query: 31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 + GK+ + Y P P VL I+ K +VG +G GKST+++ L R + + R+ + ++PQD +F T+ N+ + T+E+I+ A Q+ D + + +S+V E G S G++Q V + R +LK I++LDEAT+++DT T+ IQ +L + S T I IAHR++++ ++D++L +S+G I E Sbjct: 580 TQGKVIFSHVSFAYDPRKP-VLSDINFVAQPGKVIALVGESGGGKSTIMRILLRFFDVNSGSITIDDQDIRNVTLSSLRSSIGVVPQDSTLFNDTILYNIKYAKPSATNEEIYAAAKAAQIHDRILQFPDGYNSRVGERGLKLSGGEKQRVAVARAILKDPSIILLDEATSALDTNTERQIQAALNRLASGRTAIVIAHRLSTITNADLILCISNGRIVE 798
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y4GM_RHISN (Uncharacterized ABC transporter ATP-binding protein y4gM OS=Rhizobium sp. (strain NGR234) GN=NGR_a03510 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24 Identity = 65/218 (29.82%), Postives = 117/218 (53.67%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+I +D+ Y + + + ++ TFP K T +VG +G+GKS++I + R+ +P R R+ + QD +F GT++ N+ E +DE+I EA D + K D++V ENG S GQ+Q + + R +L+ +IL+ DEAT+++D+ ++ I+Q+L + T I IAHR+++V +D ++++ G + E Sbjct: 344 GEIRFKDVNFSYK-NGERLFQNLNVTFPAGKTTALVGPSGAGKSSIINLIMRLYDPDVGSVTVDGHDLKDVTFRSLRDRIGFVGQDTFLFSGTIKYNISLGREGASDEEIIEAAKTANAHDFIMKMPHGYDTEVGENGIKLSGGQKQRITIARAMLRNAEILIFDEATSALDSESEIQIRQALARLTRKRTTIMIAHRLSTVTAADNIVVMEGGQVAE 560
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SALPA (Lipid A export ATP-binding/permease protein msbA OS=Salmonella paratyphi A GN=msbA PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24 Identity = 68/219 (31.05%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + R +++++ Q+ +F TV +N+ EEY+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + + T + IAHR++++ +D ++++ G+I E Sbjct: 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLMIAHRLSTIEQADEIVVVEDGIIVE 558 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |