FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAP2_RAT (Antigen peptide transporter 2 OS=Rattus norvegicus GN=Tap2 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22 Identity = 63/222 (28.38%), Postives = 117/222 (52.70%), Query Frame = 1 Query: 37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693 G+++ +D+ Y P P VL+G++ T K T +VG GSGKST+ L + +P ++ ++ Q+PV+F G+V+ N+ L + D Q+ A D + + +++++ E G ++GQ+Q + + R L++ ++L+LDEAT+++D + +Q Q D T++ IAHR+ +V ++D VL+L G + E+D Sbjct: 466 GRVEFQDVSFSYPSRPEKP-VLQGLTFTLHPGKVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGEPLVQYDHHYLHRQVVLVGQEPVLFSGSVKDNIAYGLRDCEDAQVMAAAQAACADDFIGEMTNGINTEIGEKGSQLAVGQKQRLAIARALVRNPRVLILDEATSALDAECEQALQTWRSQ--EDRTMLVIAHRLHTVQNADQVLVLKQGQLVEHD 684
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_VIBPA (Lipid A export ATP-binding/permease protein msbA OS=Vibrio parahaemolyticus GN=msbA PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22 Identity = 65/219 (29.68%), Postives = 109/219 (49.77%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G + ++D+ Y L +S P K +VGR+GSGKST+ R + + R + +++ Q+ +F T+ +N+ E Y I A + + K E LD+ + ENG + S GQRQ V + R LL+ +L+LDEAT+++DT ++ IQ +L + D TV+ IAHR++++ +D +L++ G I E Sbjct: 340 GDVSVKDVSFTYVGSEKPALEHVSFDIPRGKTVALVGRSGSGKSTIANLFNRFYDVDSGSITLDGRDIRDYELKNLREQFALVSQNVHLFNDTIANNIAYATEDKYERSDIEHAAKLAHAMEFINKMENGLDTMIGENGASLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKDKTVLVIAHRLSTIEKADEILVVDDGAIIE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB6_DICDI (ABC transporter B family member 6 OS=Dictyostelium discoideum GN=abcB6 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22 Identity = 67/205 (32.68%), Postives = 104/205 (50.73%), Query Frame = 1 Query: 85 PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 P +L IS T P K +VG TG GKST+ + L R + R+ + ++PQ+ V+F TV N+ E D+Q+ +A + Q+ + + V E G S G++Q V + R LLK IL+LDEA++S+DT T+ IQQ++ + T + IAHR++++I D +L+L G I E S Sbjct: 439 PKILDNISFTVPAGKSIALVGSTGGGKSTIFRLLCRFYDVDQGEILINGENIKDVTQTSLRSIIGVVPQETVLFNDTVAYNIGFGNREANDDQLIDASRRAQILSFIESSPDGFRTVVGERGLRLSGGEKQRVSIARALLKDPPILILDEASSSLDTFTERKIQQAINEVSKGRTTLVIAHRLSTIIHCDEILVLKGGHIVERGS 643
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1304_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1304c OS=Mycobacterium bovis GN=Mb1304c PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22 Identity = 64/201 (31.84%), Postives = 107/201 (53.23%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681 VL+ IS T T IVG TGSGKSTL+ + R+ + A + + ++PQ +F GTV N+ P + T++++WEAL + D + +G L ++V + G N+S GQRQ + + R +++R I + D+A +++D TD + SLRQ D T+I + RI++ +D V+++ +G I Sbjct: 351 VLQDISLTARPGTTTAIVGSTGSGKSTLVSLICRLYDVTAGAVLVDGIDVREYHTERLWSAIGLVPQRSYLFSGTVADNLRYGGGPDQVVTEQEMWEAL-RVAAADGFVQTDG-LQTRVAQGGVNFSGGQRQRLAIARAVIRRPAIYVFDDAFSALDVHTDAKVHASLRQVSGDATIIVVTQRISNAAQADQVIVVDNGKI 549
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1273_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1273c/MT1311 OS=Mycobacterium tuberculosis GN=Rv1273c PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22 Identity = 64/201 (31.84%), Postives = 107/201 (53.23%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681 VL+ IS T T IVG TGSGKSTL+ + R+ + A + + ++PQ +F GTV N+ P + T++++WEAL + D + +G L ++V + G N+S GQRQ + + R +++R I + D+A +++D TD + SLRQ D T+I + RI++ +D V+++ +G I Sbjct: 351 VLQDISLTARPGTTTAIVGSTGSGKSTLVSLICRLYDVTAGAVLVDGIDVREYHTERLWSAIGLVPQRSYLFSGTVADNLRYGGGPDQVVTEQEMWEAL-RVAAADGFVQTDG-LQTRVAQGGVNFSGGQRQRLAIARAVIRRPAIYVFDDAFSALDVHTDAKVHASLRQVSGDATIIVVTQRISNAAQADQVIVVDNGKI 549
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PHOPR (Lipid A export ATP-binding/permease protein msbA OS=Photobacterium profundum GN=msbA PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22 Identity = 63/220 (28.64%), Postives = 115/220 (52.27%), Query Frame = 1 Query: 34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +G I ++++ Y LR +S P K +VGR+GSGKST+ L R + + R +++++ Q+ +F T+ +N+ + ++ I +A + D ++ LD+ + ENG + S GQRQ + + R LL+ +L+LDEAT+++DT ++ IQ +L + D TV+ IAHR++++ +D +L++ G I E Sbjct: 342 NGDIQVKNVTFTYPTKDTPALRNVSFDLPAGKTLALVGRSGSGKSTIANLLTRFYDIDSGELILDGREVKDYQLSNLRDQVAVVSQNVHLFNDTIANNIAYASGDSFSRADIEKAAELAYAMDFIKGMPKGLDTMIGENGVSLSGGQRQRLAIARALLRNAPVLILDEATSALDTESERAIQSALEELQKDRTVLVIAHRLSTIEGADQILVVDDGEIIE 561
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ATM1_GIBZE (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Gibberella zeae GN=ATM1 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22 Identity = 62/220 (28.18%), Postives = 111/220 (50.45%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD--CTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+I ++ Y P+ P +LR +S T P KK +VG +G GKSTL++ LFR + R + ++PQD +F TV N+ T E++ + + + ++ ++KV E G S G++Q + + R+LLK +L DEAT+++DT T+ + ++ + T + +AHR+ ++ DSD++++L G + E Sbjct: 437 GEIKFENVNFAYHPNRP-ILRDLSLTIPAGKKVAVVGPSGCGKSTLLRLLFRSYDVQGGRVLIDDQDIRDVDLESLRRSIGVVPQDTPLFNDTVEHNIRYGSINATHEEVVAVAKRAHVHNTIQSFPDGYETKVGERGLMISGGEKQRLAVSRILLKDPPLLFFDEATSALDTHTEQALMMNINSILRERGRTSVFVAHRLRTIFDSDLIIVLKEGHVAE 655
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB6_MOUSE (ATP-binding cassette sub-family B member 6, mitochondrial OS=Mus musculus GN=Abcb6 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22 Identity = 62/218 (28.44%), Postives = 116/218 (53.21%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYT-DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+I+ ++ YA L+ +S T + +VG +G+GKST+++ LFR + ++ R+ + ++PQD V+F T+ +N+ D ++ A + D + +++V E G S G++Q V + R +LK I++LDEAT+++DT+ + IQ SL + ++ T I IAHR+++V+++D +L++ G I E Sbjct: 588 GRIEFENVHFSYADGQE-TLQDVSFTVMPGQTVALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQISLRSHIGVVPQDTVLFNDTIANNIRYGRVTAGDSEVEAAAQAAGIHDAILSFPEGYETQVGERGLKLSGGEKQRVAIARTILKAPDIILLDEATSALDTSNERAIQASLAKVCTNRTTIVIAHRLSTVVNADQILVIKDGCIIE 804
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDR1_RAT (Multidrug resistance protein 1 OS=Rattus norvegicus GN=Abcb1 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22 Identity = 62/219 (28.31%), Postives = 114/219 (52.05%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ +++ Y +L+G++ + +VG +G GKST +Q L R+ +P R + ++ Q+PV+F T+ N+ E T ++I +A+ + D + K K D+ V E G S GQ+Q + + R L++ KIL+LDEAT+++DT ++ ++Q +L + T I IAHR+++V ++D++ G+I E Sbjct: 389 GNLEFKNVYFNYPSRSEVKILKGLNLKVKSGQTVALVGNSGCGKSTTVQLLQRLYDPIEGEVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 607 HSP 2 Score: 101.293 bits (251), Expect = 5.234e-21 Identity = 59/223 (26.46%), Postives = 121/223 (54.26%), Query Frame = 1 Query: 37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690 G + ++ Y P++P VL+G+S + +VG +G GKST++Q L R P A R L I+ Q+P++F+ ++ N+ D + E+I A + + + K +++V + G S GQ+Q + + R L+++ IL+LDEAT+++DT ++ ++Q++L + T + IAHR++++ ++D+++++ +G ++E+ Sbjct: 1033 GNVKFNGVKFNYPTRPNIP-VLQGLSFEVKKGQTLRLVGSSGCGKSTVVQLLERFYNPMAGTVFLDGKEIKQLNVQCVRA-LGIVSQEPILFDCSIAENIAYGDNSRVVSHEEIVRAAREANIHQFIDSLPEKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCVVIAHRLSTIQNADLIVVIQNGQVKEH 1253
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB6_RAT (ATP-binding cassette sub-family B member 6, mitochondrial OS=Rattus norvegicus GN=Abcb6 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22 Identity = 61/218 (27.98%), Postives = 116/218 (53.21%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYT-DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+++ ++ YA L+ +S T + +VG +G+GKST+++ LFR + ++ R+ + ++PQD V+F T+ +N+ D +I A + D + +++V E G S G++Q V + R +LK I++LDEAT+++DT+ + IQ SL + ++ T I +AHR+++V+++D +L++ G I E Sbjct: 588 GRVEFENVHFSYADGRE-TLQDVSFTVMPGQTVALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQISLRSHIGVVPQDTVLFNDTIANNIRYGRVTAGDSEIQAAAQAAGIHDAILSFPEGYETQVGERGLKLSGGEKQRVAIARTILKAPDIILLDEATSALDTSNERAIQASLAKVCTNRTTIVVAHRLSTVVNADQILVIKDGCIIE 804 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |