FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAP2_RAT (Antigen peptide transporter 2 OS=Rattus norvegicus GN=Tap2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 63/222 (28.38%), Postives = 117/222 (52.70%), Query Frame = 1
Query:   37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            G+++ +D+   Y   P  P VL+G++ T    K T +VG  GSGKST+   L  + +P                      ++ ++ Q+PV+F G+V+ N+   L +  D Q+  A       D + +    +++++ E G   ++GQ+Q + + R L++  ++L+LDEAT+++D   +  +Q    Q   D T++ IAHR+ +V ++D VL+L  G + E+D
Sbjct:  466 GRVEFQDVSFSYPSRPEKP-VLQGLTFTLHPGKVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGEPLVQYDHHYLHRQVVLVGQEPVLFSGSVKDNIAYGLRDCEDAQVMAAAQAACADDFIGEMTNGINTEIGEKGSQLAVGQKQRLAIARALVRNPRVLILDEATSALDAECEQALQTWRSQ--EDRTMLVIAHRLHTVQNADQVLVLKQGQLVEHD 684          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_VIBPA (Lipid A export ATP-binding/permease protein msbA OS=Vibrio parahaemolyticus GN=msbA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 65/219 (29.68%), Postives = 109/219 (49.77%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G + ++D+   Y       L  +S   P  K   +VGR+GSGKST+     R  +  +                  R + +++ Q+  +F  T+ +N+    E  Y    I  A       + + K E  LD+ + ENG + S GQRQ V + R LL+   +L+LDEAT+++DT ++  IQ +L +   D TV+ IAHR++++  +D +L++  G I E
Sbjct:  340 GDVSVKDVSFTYVGSEKPALEHVSFDIPRGKTVALVGRSGSGKSTIANLFNRFYDVDSGSITLDGRDIRDYELKNLREQFALVSQNVHLFNDTIANNIAYATEDKYERSDIEHAAKLAHAMEFINKMENGLDTMIGENGASLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKDKTVLVIAHRLSTIEKADEILVVDDGAIIE 558          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB6_DICDI (ABC transporter B family member 6 OS=Dictyostelium discoideum GN=abcB6 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 67/205 (32.68%), Postives = 104/205 (50.73%), Query Frame = 1
Query:   85 PFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            P +L  IS T P  K   +VG TG GKST+ + L R  +                     R+ + ++PQ+ V+F  TV  N+     E  D+Q+ +A  + Q+   +        + V E G   S G++Q V + R LLK   IL+LDEA++S+DT T+  IQQ++ +     T + IAHR++++I  D +L+L  G I E  S
Sbjct:  439 PKILDNISFTVPAGKSIALVGSTGGGKSTIFRLLCRFYDVDQGEILINGENIKDVTQTSLRSIIGVVPQETVLFNDTVAYNIGFGNREANDDQLIDASRRAQILSFIESSPDGFRTVVGERGLRLSGGEKQRVSIARALLKDPPILILDEASSSLDTFTERKIQQAINEVSKGRTTLVIAHRLSTIIHCDEILVLKGGHIVERGS 643          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1304_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1304c OS=Mycobacterium bovis GN=Mb1304c PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 64/201 (31.84%), Postives = 107/201 (53.23%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            VL+ IS T      T IVG TGSGKSTL+  + R+ +  A                   + + ++PQ   +F GTV  N+     P +  T++++WEAL +    D   + +G L ++V + G N+S GQRQ + + R +++R  I + D+A +++D  TD  +  SLRQ   D T+I +  RI++   +D V+++ +G I
Sbjct:  351 VLQDISLTARPGTTTAIVGSTGSGKSTLVSLICRLYDVTAGAVLVDGIDVREYHTERLWSAIGLVPQRSYLFSGTVADNLRYGGGPDQVVTEQEMWEAL-RVAAADGFVQTDG-LQTRVAQGGVNFSGGQRQRLAIARAVIRRPAIYVFDDAFSALDVHTDAKVHASLRQVSGDATIIVVTQRISNAAQADQVIVVDNGKI 549          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1273_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1273c/MT1311 OS=Mycobacterium tuberculosis GN=Rv1273c PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 64/201 (31.84%), Postives = 107/201 (53.23%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            VL+ IS T      T IVG TGSGKSTL+  + R+ +  A                   + + ++PQ   +F GTV  N+     P +  T++++WEAL +    D   + +G L ++V + G N+S GQRQ + + R +++R  I + D+A +++D  TD  +  SLRQ   D T+I +  RI++   +D V+++ +G I
Sbjct:  351 VLQDISLTARPGTTTAIVGSTGSGKSTLVSLICRLYDVTAGAVLVDGIDVREYHTERLWSAIGLVPQRSYLFSGTVADNLRYGGGPDQVVTEQEMWEAL-RVAAADGFVQTDG-LQTRVAQGGVNFSGGQRQRLAIARAVIRRPAIYVFDDAFSALDVHTDAKVHASLRQVSGDATIIVVTQRISNAAQADQVIVVDNGKI 549          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PHOPR (Lipid A export ATP-binding/permease protein msbA OS=Photobacterium profundum GN=msbA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 63/220 (28.64%), Postives = 115/220 (52.27%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +G I ++++   Y       LR +S   P  K   +VGR+GSGKST+   L R  +  +                  R +++++ Q+  +F  T+ +N+     + ++   I +A +     D ++     LD+ + ENG + S GQRQ + + R LL+   +L+LDEAT+++DT ++  IQ +L +   D TV+ IAHR++++  +D +L++  G I E
Sbjct:  342 NGDIQVKNVTFTYPTKDTPALRNVSFDLPAGKTLALVGRSGSGKSTIANLLTRFYDIDSGELILDGREVKDYQLSNLRDQVAVVSQNVHLFNDTIANNIAYASGDSFSRADIEKAAELAYAMDFIKGMPKGLDTMIGENGVSLSGGQRQRLAIARALLRNAPVLILDEATSALDTESERAIQSALEELQKDRTVLVIAHRLSTIEGADQILVVDDGEIIE 561          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ATM1_GIBZE (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Gibberella zeae GN=ATM1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 62/220 (28.18%), Postives = 111/220 (50.45%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD--CTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I   ++   Y P+ P +LR +S T P  KK  +VG +G GKSTL++ LFR  +                     R  + ++PQD  +F  TV  N+       T E++     +  + + ++      ++KV E G   S G++Q + + R+LLK   +L  DEAT+++DT T+  +  ++     +   T + +AHR+ ++ DSD++++L  G + E
Sbjct:  437 GEIKFENVNFAYHPNRP-ILRDLSLTIPAGKKVAVVGPSGCGKSTLLRLLFRSYDVQGGRVLIDDQDIRDVDLESLRRSIGVVPQDTPLFNDTVEHNIRYGSINATHEEVVAVAKRAHVHNTIQSFPDGYETKVGERGLMISGGEKQRLAVSRILLKDPPLLFFDEATSALDTHTEQALMMNINSILRERGRTSVFVAHRLRTIFDSDLIIVLKEGHVAE 655          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB6_MOUSE (ATP-binding cassette sub-family B member 6, mitochondrial OS=Mus musculus GN=Abcb6 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 62/218 (28.44%), Postives = 116/218 (53.21%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYT-DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I+  ++   YA      L+ +S T    +   +VG +G+GKST+++ LFR  + ++                  R+ + ++PQD V+F  T+ +N+        D ++  A     + D +       +++V E G   S G++Q V + R +LK   I++LDEAT+++DT+ +  IQ SL +  ++ T I IAHR+++V+++D +L++  G I E
Sbjct:  588 GRIEFENVHFSYADGQE-TLQDVSFTVMPGQTVALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQISLRSHIGVVPQDTVLFNDTIANNIRYGRVTAGDSEVEAAAQAAGIHDAILSFPEGYETQVGERGLKLSGGEKQRVAIARTILKAPDIILLDEATSALDTSNERAIQASLAKVCTNRTTIVIAHRLSTVVNADQILVIKDGCIIE 804          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDR1_RAT (Multidrug resistance protein 1 OS=Rattus norvegicus GN=Abcb1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 62/219 (28.31%), Postives = 114/219 (52.05%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ +++   Y       +L+G++      +   +VG +G GKST +Q L R+ +P                    R  + ++ Q+PV+F  T+  N+    E  T ++I +A+ +    D + K   K D+ V E G   S GQ+Q + + R L++  KIL+LDEAT+++DT ++ ++Q +L +     T I IAHR+++V ++D++     G+I E
Sbjct:  389 GNLEFKNVYFNYPSRSEVKILKGLNLKVKSGQTVALVGNSGCGKSTTVQLLQRLYDPIEGEVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 607          

HSP 2 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 59/223 (26.46%), Postives = 121/223 (54.26%), Query Frame = 1
Query:   37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690
            G +    ++  Y   P++P VL+G+S      +   +VG +G GKST++Q L R   P A                  R  L I+ Q+P++F+ ++  N+   D     + E+I  A  +  +   +     K +++V + G   S GQ+Q + + R L+++  IL+LDEAT+++DT ++ ++Q++L +     T + IAHR++++ ++D+++++ +G ++E+
Sbjct: 1033 GNVKFNGVKFNYPTRPNIP-VLQGLSFEVKKGQTLRLVGSSGCGKSTVVQLLERFYNPMAGTVFLDGKEIKQLNVQCVRA-LGIVSQEPILFDCSIAENIAYGDNSRVVSHEEIVRAAREANIHQFIDSLPEKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCVVIAHRLSTIQNADLIVVIQNGQVKEH 1253          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB6_RAT (ATP-binding cassette sub-family B member 6, mitochondrial OS=Rattus norvegicus GN=Abcb6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 61/218 (27.98%), Postives = 116/218 (53.21%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYT-DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+++  ++   YA      L+ +S T    +   +VG +G+GKST+++ LFR  + ++                  R+ + ++PQD V+F  T+ +N+        D +I  A     + D +       +++V E G   S G++Q V + R +LK   I++LDEAT+++DT+ +  IQ SL +  ++ T I +AHR+++V+++D +L++  G I E
Sbjct:  588 GRVEFENVHFSYADGRE-TLQDVSFTVMPGQTVALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQISLRSHIGVVPQDTVLFNDTIANNIRYGRVTAGDSEIQAAAQAAGIHDAILSFPEGYETQVGERGLKLSGGEKQRVAIARTILKAPDIILLDEATSALDTSNERAIQASLAKVCTNRTTIVVAHRLSTVVNADQILVIKDGCIIE 804          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
TAP2_RAT1.246e-2228.38Antigen peptide transporter 2 OS=Rattus norvegicus... [more]
MSBA_VIBPA1.246e-2229.68Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB6_DICDI1.246e-2232.68ABC transporter B family member 6 OS=Dictyostelium... [more]
Y1304_MYCBO1.627e-2231.84Uncharacterized ABC transporter ATP-binding protei... [more]
Y1273_MYCTU1.627e-2231.84Uncharacterized ABC transporter ATP-binding protei... [more]
MSBA_PHOPR1.627e-2228.64Lipid A export ATP-binding/permease protein msbA O... [more]
ATM1_GIBZE1.627e-2228.18Iron-sulfur clusters transporter ATM1, mitochondri... [more]
ABCB6_MOUSE1.627e-2228.44ATP-binding cassette sub-family B member 6, mitoch... [more]
MDR1_RAT2.125e-2228.31Multidrug resistance protein 1 OS=Rattus norvegicu... [more]
ABCB6_RAT2.125e-2227.98ATP-binding cassette sub-family B member 6, mitoch... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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