FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_XANCP (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. campestris GN=msbA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 67/219 (30.59%), Postives = 110/219 (50.23%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I+ RD+  RY       L  +S        T IVGR+GSGKS+LI+ + R  E  +                  R +++++ Q  ++F+G++  NV    + +    Q+  A+      + V +    L S V   G   S GQRQ + + R +LK   IL+LDEATA++D  ++ L+Q +L +   D T + IAHR++++  +D VL++  G I E
Sbjct:  344 GLIEFRDVTARYPGQANPALADVSFVAQPGTVTAIVGRSGSGKSSLIKLIPRFYEAESGQILLDGHPVQAYALADLRRQIALVGQQVMLFDGSIAENVAYGEMRQCDAGQLERAIQGANAMEFVAQLPEGLQSHVGTKGGRLSGGQRQRLAIARAMLKDAPILILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVE 562          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_XANC8 (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=msbA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 67/219 (30.59%), Postives = 110/219 (50.23%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I+ RD+  RY       L  +S        T IVGR+GSGKS+LI+ + R  E  +                  R +++++ Q  ++F+G++  NV    + +    Q+  A+      + V +    L S V   G   S GQRQ + + R +LK   IL+LDEATA++D  ++ L+Q +L +   D T + IAHR++++  +D VL++  G I E
Sbjct:  344 GLIEFRDVTARYPGQANPALADVSFVAQPGTVTAIVGRSGSGKSSLIKLIPRFYEAESGQILLDGHPVQAYALADLRRQIALVGQQVMLFDGSIAENVAYGEMRQCDAGQLERAIQGANAMEFVAQLPEGLQSHVGTKGGRLSGGQRQRLAIARAMLKDAPILILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVE 562          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ATM1_ASPFU (Iron-sulfur clusters transporter atm1, mitochondrial OS=Aspergillus fumigatus GN=atm1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 63/223 (28.25%), Postives = 114/223 (51.12%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD--CTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G+I   ++   Y P  P +L+  S T P  +K  IVG +G GKST+++ LFR  +                     R  + ++PQD  +F  T+  N+     + TDE++ +A  + ++   ++K      + V E G   S G++Q + + R++LK  ++L  DEAT+++DT T+  + Q++     +   T + +AHR+ ++ DSD +L+L  G + E  S
Sbjct:  454 GEIRFENVTFGYHPDRP-ILKNASFTIPAGQKFAIVGPSGCGKSTILRLLFRFYDVQEGRILIDDQDVRDVSLESLRKAIGVVPQDTPLFNDTIAHNIRYGRIDATDEEVHKAAQRARIDALIQKLPEGYQTAVGERGMMISGGEKQRLAISRLILKDPELLFFDEATSALDTYTEQALLQNINSILKEKKRTSVFVAHRLRTIYDSDQILVLKDGRVAEMGS 675          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB10B_ARATH (ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 64/223 (28.70%), Postives = 112/223 (50.22%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G I+L+ +   Y P  P V      +   P  K   +VG++GSGKS+++  + R  +P A                  R  + ++ Q+P +F  T+  N+   +E   E ++ EA         +        +KV E G   S GQRQ + + R +LK  +IL+LDEAT+++D  ++ ++QQ+L +   D T + +AHR++++ +SDM+ ++  G I E  S
Sbjct:  980 GTIELKGVHFSY-PSRPDVTIFSDFNLLVPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLKLKSLRRHIGLVQQEPALFATTIYENILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMRDRTTVVVAHRLSTIKNSDMISVIQDGKIIEQGS 1201          

HSP 2 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 62/224 (27.68%), Postives = 114/224 (50.89%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFVL--RGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +G I  +D+   Y P  P V+    ++   P  K   +VG +GSGKST+I  + R  EP                    R  + ++ Q+PV+F  T+R N+    ++ T E+I  A    +    +       +++V E G   S GQ+Q + + R ++K   IL+LDEAT+++D  ++ ++Q++L +     T + +AHR+++V ++D++ ++  G I E  S
Sbjct:  358 NGDILFKDVTFTY-PSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDGAVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGS 580          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_CHRSD (Lipid A export ATP-binding/permease protein msbA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=msbA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 63/218 (28.90%), Postives = 107/218 (49.08%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDE-VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G++    ++ RY      VL+GI    P  +   IVGR+GSGKSTL+  + R   P                    R R++++ Q   +F  T+ +N+       D +  E+  +     E + +     D+ V +NG   S GQRQ + + R + K   +L+LDEAT+++DT ++  IQQ+L +     T   IAHR++++  +D +L++  G I E
Sbjct:  336 GRVRFEGVRFRYGEDQAEVLKGIDLDVPQGEMIAIVGRSGSGKSTLVSLMPRFYRPTEGRVLLDDVDIQEYALSPLRQRIALVSQQVTLFNTTIAANIAYGHPDADREAVESAARSAYAHEFIERLPNGYDTVVGDNGVMLSGGQRQRLAIARAIFKDAPLLVLDEATSALDTESERYIQQALERVCRGRTTFVIAHRLSTIERADRILVMEQGEIIE 553          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ALCBS (Lipid A export ATP-binding/permease protein msbA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=msbA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G ID   +   Y P  P V+R ++      +   +VGR+G+GKST+   L R  +P                    R +++++ Q  V+F  +VR+N+    L    D  I +A         + + E  LD+ + ++G   S GQRQ + + R LLK   +L+LDEAT+++D+ +++ IQQ+L Q     T + IAHR++++  +D +++L  G + E  S
Sbjct:  340 GNIDFEGVSFGYDPASP-VVRQLNFAIKAGETVALVGRSGAGKSTISAMLPRFFDPDQGRILLDGIPLQEYQLSELRNQIAMVSQRVVLFNDSVRNNIAYGELRSSDDASIIKAAKDAHAWSFIEQLEHGLDTLLGQDGVQLSGGQRQRIAIARALLKDAPVLILDEATSALDSESEHHIQQALEQVMQGRTTLVIAHRLSTIEKADRIMVLDQGQLIEQGS 560          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ATM1_ASPOR (Iron-sulfur clusters transporter atm1, mitochondrial OS=Aspergillus oryzae GN=atm1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 63/223 (28.25%), Postives = 113/223 (50.67%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSD--CTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G+I   ++   Y P  P +L+  S T P  +K  IVG +G GKST+++ LFR  +                     R  + ++PQD  +F  ++  N+     + TDE++ +A  +  + + + K      + V E G   S G++Q + + R++LK  ++L  DEAT+++DT T+  + Q++     D   T + +AHR+ ++ DSD +L+L  G + E  S
Sbjct:  450 GEIKFENVTFGYHPDRP-ILKNASFTIPAGQKFAIVGPSGCGKSTILRLLFRYYDVQEGRILVDGQDVRDVTLESLRKAIGVVPQDTPLFNDSIAHNIRYGRIDATDEEVRKAAQRAHIHELIEKLPEGYKTAVGERGMMISGGEKQRLAISRLILKDPELLFFDEATSALDTYTEQALLQNINSVLKDKARTSVFVAHRLRTICDSDQILVLKEGRVAETGS 671          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB28B_ARATH (ABC transporter B family member 28 OS=Arabidopsis thaliana GN=ABCB28 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 73/222 (32.88%), Postives = 110/222 (49.55%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD---PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G + L D+   Y P  P V  L G+S T      T +VG +G+GKST++Q L R  EP                       +SI+ Q+PV+F  +V  N+    P E  + + I +A       D +       D+ V E G   S GQRQ V + R LLK   IL+LDEAT+++D  ++ L+Q +L +   D T + IAHR+++V  ++ + + S G I E
Sbjct:  468 GDVCLDDVHFAY-PLRPDVKVLDGLSLTLNSGTVTALVGSSGAGKSTIVQLLARFYEPTQGRITVGGEDVRMFDKSEWAKVVSIVNQEPVLFSLSVAENIAYGLPNEHVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRVAIARSLLKNAPILILDEATSALDAVSERLVQSALNRLMKDRTTLVIAHRLSTVQSANQIAVCSDGKIIE 688          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_XANC5 (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=msbA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 67/219 (30.59%), Postives = 110/219 (50.23%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I+ RD+  RY   +   L  +S        T IVGR+GSGKS+LI+ + R  E  A                  R +++++ Q  ++F+G++  NV    +      Q+  A+      + V +    L S V   G   S GQRQ + + R +LK   +L+LDEATA++D  ++ L+Q +L +   D T + IAHR++++  +D VL++  G I E
Sbjct:  344 GLIEFRDVTARYPGQVNPALADVSFVAQPGTVTAIVGRSGSGKSSLIKLIPRFYEAEAGQILLDGHPVQAYALADLRRQIALVGQQVMLFDGSIADNVAFGEMRNADAGQLERAILGANAMEFVAQLPEGLQSHVGTKGGRLSGGQRQRLAIARAMLKDAPVLILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVE 562          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_XANOR (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas oryzae pv. oryzae GN=msbA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 67/219 (30.59%), Postives = 110/219 (50.23%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I+ RD+  RY   +   L  +S        T IVGR+GSGKS+LI+ + R  +  A                  R +++++ Q  ++F+G++  NV    +      Q+  A+      + V +    L S V   G   S GQRQ + + R +LK   IL+LDEATA++D  ++ L+Q +L +   D T + IAHR++++  +D VL++  G I E
Sbjct:  344 GLIEFRDVTARYPGQVNPALADVSFIAQPGTVTAIVGRSGSGKSSLIKLIPRFYDAEAGQILLDGQPVQAYALADLRRQIALVGQQVMLFDGSIAENVAFGEMRSADASQLERAILGANAMEFVAQLPEGLQSHVGAKGGRLSGGQRQRLAIARAMLKDAPILILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVE 562          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MSBA_XANCP2.775e-2230.59Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XANC82.775e-2230.59Lipid A export ATP-binding/permease protein msbA O... [more]
ATM1_ASPFU2.775e-2228.25Iron-sulfur clusters transporter atm1, mitochondri... [more]
AB10B_ARATH2.775e-2228.70ABC transporter B family member 10 OS=Arabidopsis ... [more]
MSBA_CHRSD3.625e-2228.90Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ALCBS3.625e-2229.28Lipid A export ATP-binding/permease protein msbA O... [more]
ATM1_ASPOR3.625e-2228.25Iron-sulfur clusters transporter atm1, mitochondri... [more]
AB28B_ARATH3.625e-2232.88ABC transporter B family member 28 OS=Arabidopsis ... [more]
MSBA_XANC54.734e-2230.59Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XANOR6.183e-2230.59Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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