FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LKTB_PASSP (Leukotoxin translocation ATP-binding protein lktB OS=Pasteurella haemolytica-like sp. (strain 5943B) GN=lktB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 64/218 (29.36%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I  ++++ RY P  P +L  ++      +  GIVGR+GSGKSTL + L R   P                    R ++ ++ QD V+   ++R N+   E   + E++  A       D +       ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I Q++++     TVI IAHR+++V ++D ++++  G I E
Sbjct:  467 GDIAFKNIRFRYKPDAPTILNNVNLEIKKGEVIGIVGRSGSGKSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIALSEPGMSMERVIYAAKLAGAHDFISDVREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVE 684          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LKTB7_PASHA (Leukotoxin translocation ATP-binding protein lktB OS=Pasteurella haemolytica GN=lktB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 65/220 (29.55%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I  ++++ RY P  P +L  ++      +  GIVGR+GSGKSTL + L R   P                    R ++ ++ QD V+   ++R N+   DP      E++  A       D + +     ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I Q++++     TVI IAHR+++V ++D ++++  G I E
Sbjct:  467 GDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSGKSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIALSDP--GMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVE 684          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LKB2A_PASHA (Leukotoxin translocation ATP-binding protein lktB OS=Pasteurella haemolytica GN=lktB PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 65/220 (29.55%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I  ++++ RY P  P +L  ++      +  GIVGR+GSGKSTL + L R   P                    R ++ ++ QD V+   ++R N+   DP      E++  A       D + +     ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I Q++++     TVI IAHR+++V ++D ++++  G I E
Sbjct:  467 GDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSGKSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIALSDP--GMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVE 684          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LKB1B_PASHA (Leukotoxin translocation ATP-binding protein lktB OS=Pasteurella haemolytica GN=lktB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 65/220 (29.55%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I  ++++ RY P  P +L  ++      +  GIVGR+GSGKSTL + L R   P                    R ++ ++ QD V+   ++R N+   DP      E++  A       D + +     ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I Q++++     TVI IAHR+++V ++D ++++  G I E
Sbjct:  467 GDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSGKSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIALSDP--GMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVE 684          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LKB1A_PASHA (Leukotoxin translocation ATP-binding protein lktB OS=Pasteurella haemolytica GN=lktB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 65/220 (29.55%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I  ++++ RY P  P +L  ++      +  GIVGR+GSGKSTL + L R   P                    R ++ ++ QD V+   ++R N+   DP      E++  A       D + +     ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I Q++++     TVI IAHR+++V ++D ++++  G I E
Sbjct:  467 GDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSGKSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIALSDP--GMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVE 684          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LKB16_PASHA (Leukotoxin translocation ATP-binding protein lktB OS=Pasteurella haemolytica GN=lktB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 65/220 (29.55%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I  ++++ RY P  P +L  ++      +  GIVGR+GSGKSTL + L R   P                    R ++ ++ QD V+   ++R N+   DP      E++  A       D + +     ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I Q++++     TVI IAHR+++V ++D ++++  G I E
Sbjct:  467 GDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSGKSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIALSDP--GMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYQSEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVE 684          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LKB14_PASHA (Leukotoxin translocation ATP-binding protein lktB OS=Pasteurella haemolytica GN=lktB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 65/220 (29.55%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I  ++++ RY P  P +L  ++      +  GIVGR+GSGKSTL + L R   P                    R ++ ++ QD V+   ++R N+   DP      E++  A       D + +     ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I Q++++     TVI IAHR+++V ++D ++++  G I E
Sbjct:  467 GDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSGKSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIALSDP--GMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVE 684          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LKB13_PASHA (Leukotoxin translocation ATP-binding protein lktB OS=Pasteurella haemolytica GN=lktB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 65/220 (29.55%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I  ++++ RY P  P +L  ++      +  GIVGR+GSGKSTL + L R   P                    R ++ ++ QD V+   ++R N+   DP      E++  A       D + +     ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I Q++++     TVI IAHR+++V ++D ++++  G I E
Sbjct:  467 GDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSGKSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIALSDP--GMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVE 684          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ATM1_USTMA (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Ustilago maydis GN=ATM1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 65/222 (29.28%), Postives = 110/222 (49.55%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            S G+I   ++   Y P  P + R IS T P   KT  VG +G GKST+ + LFR  EP +                  R  + ++PQD  +F   +R N+     + +DE + +A    ++   V        +KV E G   S G++Q + + R+LLK   +L  DEAT+++D+ T+  + +++         T I +AHR+ ++ DSD +++L  G ++E
Sbjct:  493 SGGEIRFENVTFGYHPDRP-IFRNISFTVPAGYKTAFVGPSGCGKSTIFRLLFRFYEPQSGKIYIDGQDITKVSLESLRRHIGVVPQDTPLFNDDIRHNIRYGRLDASDEDVEKAARAAKVDQIVLNLPEGYSTKVGERGLMISGGEKQRLAVARLLLKNPSVLFFDEATSALDSYTETELMRNIHATLLADKKTAIFVAHRLRTISDSDFIIVLQGGGVKE 713          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1073_RICCN (Putative export ATP-binding/permease protein RC1073 OS=Rickettsia conorii GN=RC1073 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 58/196 (29.59%), Postives = 106/196 (54.08%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 675
            ++  +S      K  GIVGR+G+GKST+IQ L R                        R  ++ +PQ+  +F GT++SN+     E +D++I E +    + +   K    +++K+ E G   S GQ+Q + + R LL+  +IL+LDEA +++DT ++  + +S+++      +I+IAHRI+S+  +D +L++  G
Sbjct:  353 IINNMSLKINANKFLGIVGRSGAGKSTVIQLLLRFYRQENGTILINNQDITLLNPAEIRKLIAYVPQEASIFSGTIKSNIIFGNNEASDDEINEIIKITGIEEFAAKLHDGINAKIGERGVRLSGGQKQRIAIARALLRMPQILLLDEAMSALDTMSEQKLLESIKKIMRGNIIISIAHRISSIESADYILVIDKG 548          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
LKTB_PASSP1.377e-2129.36Leukotoxin translocation ATP-binding protein lktB ... [more]
LKTB7_PASHA1.377e-2129.55Leukotoxin translocation ATP-binding protein lktB ... [more]
LKB2A_PASHA1.377e-2129.55Leukotoxin translocation ATP-binding protein lktB ... [more]
LKB1B_PASHA1.377e-2129.55Leukotoxin translocation ATP-binding protein lktB ... [more]
LKB1A_PASHA1.377e-2129.55Leukotoxin translocation ATP-binding protein lktB ... [more]
LKB16_PASHA1.377e-2129.55Leukotoxin translocation ATP-binding protein lktB ... [more]
LKB14_PASHA1.377e-2129.55Leukotoxin translocation ATP-binding protein lktB ... [more]
LKB13_PASHA1.377e-2129.55Leukotoxin translocation ATP-binding protein lktB ... [more]
ATM1_USTMA1.377e-2129.28Iron-sulfur clusters transporter ATM1, mitochondri... [more]
Y1073_RICCN1.799e-2129.59Putative export ATP-binding/permease protein RC107... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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