FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_RALEJ (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia eutropha (strain JMP134) GN=msbA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 60/212 (28.30%), Postives = 106/212 (50.00%), Query Frame = 1
Query:   67 RYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD----PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690
            RY       L GI    P  +   +VG +GSGK+TL+  + R  +P                    R +++ + QD V+F  TV +NV       EE    ++  AL    L + V+     +++ + +NG   S GQRQ + + R + K   IL+LDEAT+++D+ ++  +Q +L       T + IAHR++++ ++D +++L HG + E+
Sbjct:  355 RYGEGTRPALEGIDIRVPAGEVVALVGPSGSGKTTLVNLVPRFFDPTDGRILLDGHAIGDIALRELRNQIAFVSQDVVLFNDTVAANVAYGARSEEEIDMARVERALQAAYLTEVVKNLPEGVNTNIGDNGMKLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERQVQAALEALMVGRTTLVIAHRLSTIENADRIVVLDHGRVAEH 566          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSEA6 (Lipid A export ATP-binding/permease protein msbA OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=msbA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 63/219 (28.77%), Postives = 107/219 (48.86%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            GK++ RD+   Y       L  +S T    K   +VGR+GSGKST+   L R  +                     R + +++ Q   +F  T+ +N+    E   T EQ+  A       + + +    +++ + ENG   S GQRQ + + R +L    +L+LDEAT+++DT ++ LIQ +L     D T I +AHR++++  +D +L++  G I E
Sbjct:  338 GKLEFRDVTFHYPNKEEAALSDMSFTVEPGKTFALVGRSGSGKSTISSLLTRFYDAQQGTILLDDVPLQDFKLKDLRRQFALVSQHVTLFNDTIANNIAYGSEGRVTPEQVLAAAKTAHALEFIEQLPNGMETLIGENGLMLSGGQRQRLAIARAVLLDAPVLILDEATSALDTESERLIQDALETLQQDRTSIVVAHRLSTIESADQILVIERGRILE 556          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_NITOC (Lipid A export ATP-binding/permease protein msbA OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=msbA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 65/221 (29.41%), Postives = 105/221 (47.51%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            + G I    L   Y P    VL  I       +   +VG +GSGKSTL+  L R  E  +                  R +++++ Q  ++F  T+  N+     ++ + + I  A +     + + +    LD+ + E G   S GQRQ + + R LLK   IL+LDEATAS+DT  +  IQ +L       T + IAHR+++V ++D +++L  G I E
Sbjct:  339 ARGAIRFEHLSFCYEPAKGPVLENIDLEIKPYQTIALVGHSGSGKSTLVSLLARFYETTSGRILIDEMDIQTLRLTELRRQIALVSQQIILFNDTIAHNIAYGSYQQTSKQDIIRAAEAAHAMEFINRLPDGLDTVIGEKGVLLSGGQRQRLAIARALLKDAPILILDEATASLDTEAERHIQAALETLMRQRTTLVIAHRLSTVENADQIIVLHQGQIIE 559          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BURXL (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia xenovorans (strain LB400) GN=msbA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 65/225 (28.89%), Postives = 111/225 (49.33%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRY---APHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +HG ++ RD+   Y   A H    L  IS      +   + G +GSGK+TL+  L R  +P                    R++++++ QD V+F  TV +NV   +     ++  AL    L D V      +++ V +NG   S GQRQ + + R + K   IL+LDEAT+++D+ ++  +Q +L       T + IAHR++++  +D +L++  G I E  S
Sbjct:  349 AHGAVEFRDVSFVYSGNATHNRHTLDQISFRVAPGEMIALAGPSGSGKTTLVNLLPRFFDPTGGQILVDGVAIPEYDLHALRSQIAMVSQDVVLFNDTVANNVAYGQTADAGKVKAALRAANLWDTVEAMPKGIETLVGDNGMMLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVMEAGRIVESGS 573          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDR3_HUMAN (Multidrug resistance protein 3 OS=Homo sapiens GN=ABCB4 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 61/222 (27.48%), Postives = 112/222 (50.45%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G ++  D+   Y       +L+G++      +   +VG +G GKST +Q + R+ +P                    R  + ++ Q+PV+F  T+  N+       T ++I +A+ +    + + K   K D+ V E G   S GQ+Q + + R L++  KIL+LDEAT+++DT ++  +Q +L +     T I IAHR+++V ++D++     G+I E  S
Sbjct:  392 GNLEFNDVHFSYPSRANVKILKGLNLKVQSGQTVALVGSSGCGKSTTVQLIQRLYDPDEGTINIDGQDIRNFNVNYLREIIGVVSQEPVLFSTTIAENICYGRGNVTMDEIKKAVKEANAYEFIMKLPQKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGS 613          

HSP 2 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 55/210 (26.19%), Postives = 113/210 (53.81%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXX-------RTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690
            VL+G+S      +   +VG +G GKST++Q L R  +P A                         R +L I+ Q+P++F+ ++  N+   D     + ++I  A     +   +     K +++V + G   S GQ+Q + + R L+++ +IL+LDEAT+++DT ++ ++Q++L +     T I IAHR++++ ++D++++  +G ++E+
Sbjct: 1051 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGTVFVDFGFQLLDGQEAKKLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSQDEIVSAAKAANIHPFIETLPHKYETRVGDKGTQLSGGQKQRIAIARALIRQPQILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEH 1260          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HLYB_PROVU (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Proteus vulgaris GN=hlyB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 64/221 (28.96%), Postives = 112/221 (50.68%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +G I  R+++ RY P  P +L  I+      +  GIVGR+GSGKSTL + + R   P                    R ++ ++ QD V+   ++  N+   DP      E++  A       D + +     ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I +++ +     TVI IAHR+++V ++D ++++  G I E
Sbjct:  465 NGDISFRNIRFRYKPDAPIILNNINLNIKQGEIIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNIALADP--GMPVEKVIHAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICQGRTVIIIAHRLSTVKNADRIIVMEKGQIIE 683          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HLYB_ECOL6 (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli O6 GN=hlyB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 62/219 (28.31%), Postives = 112/219 (51.14%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +G I  R+++ RY P  P +L  I+ +    +  GIVGR+GSGKSTL + + R   P                    R ++ ++ QD V+   ++  N+       + E++  A       D + +     ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I +++ +     TVI IAHR+++V ++D ++++  G I E
Sbjct:  465 NGNITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHIIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 683          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB18B_ARATH (ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 60/222 (27.03%), Postives = 109/222 (49.10%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVL--RGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I   ++   Y P  P V+  +  S      K T IVG +GSGKST+I  + R  +P                    R  ++++ Q+P +F GT+R N+       +  + +I EA       D +       D+   + G   S GQ+Q + + R +LK   +L+LDEAT+++D+ +++++Q +L +     T + IAHR++++   D + +L +G + E
Sbjct:  978 GQISFSNVDFAY-PTRPDVIIFQNFSIDIEDGKSTAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQHIALVSQEPTLFAGTIRENIMYGGASNKIDESEIIEAAKAANAHDFITSLSNGYDTCCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAHRLSTIQKCDTIAVLENGAVVE 1198          

HSP 2 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 58/225 (25.78%), Postives = 117/225 (52.00%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV-DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            + G+++   ++  Y   P  P +   +    P  K   +VG +GSGKST+I  L R  +P A                  R+++ ++ Q+PV+F  +++ N+    E+ + +++ EA         + +      ++V E G   S GQ+Q + + R ++K   IL+LDEAT+++D+ ++ ++Q++L       T I IAHR++++ ++D++ ++ +G I E  S
Sbjct:  343 TRGEVEFNHVKFTYPSRPETP-IFDDLCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGLPINKLQVKWLRSQMGLVSQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSYQTQVGERGVQLSGGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRTTIVIAHRLSTIRNADVICVVHNGRIIETGS 566          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: YKNU_BACSU (Uncharacterized ABC transporter ATP-binding protein yknU OS=Bacillus subtilis GN=yknU PE=3 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 60/224 (26.79%), Postives = 108/224 (48.21%), Query Frame = 1
Query:   19 HSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            H     G +  +++ + Y       L  +S      K  G++G TGSGKS++ Q L R   P                    R+ + ++ Q+  +F  T+RSN+     + + E + EA  + Q  + + +     D+ + E G   S GQ+Q + + R +     IL+LD+AT++VD  T++ IQ +L++   + T   +AHRI+S+  +D +L+ + G I E
Sbjct:  327 HKQKLTGDVHFKNVSLAYGKEQTNALCNVSFEANSGKVIGLLGPTGSGKSSVTQLLTRFYSPVGGMITIDHKPITDYSLKTLRSNIGVVLQESFLFSSTIRSNISYGRPDASMEDVIEAAKRAQAHNFIMELPDGYDTMLGERGMGLSGGQKQRIAIARAICLNPSILILDDATSAVDMQTEHSIQLALKEVMKNRTTFIVAHRISSLKHADEILVFNKGRIRE 550          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1799_STAAB (Putative multidrug export ATP-binding/permease protein SAB1799c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1799c PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 58/218 (26.61%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+ID+  +  +Y  +   +L+ I+ +    +    VG +G GKSTLI  + R  +  +                  R ++ ++ QD ++F  TV+ N+       TDE++ E        D +       D++V E G   S GQ+Q + + R+ L    IL+LDEAT+++D  ++++IQ++L     D T + +AHR++++  +D ++++ +G I E
Sbjct:  338 GRIDIYHVNFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEVAKVANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MSBA_RALEJ6.836e-2128.30Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEA66.836e-2128.77Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_NITOC6.836e-2129.41Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURXL6.836e-2128.89Lipid A export ATP-binding/permease protein msbA O... [more]
MDR3_HUMAN8.928e-2127.48Multidrug resistance protein 3 OS=Homo sapiens GN=... [more]
HLYB_PROVU8.928e-2128.96Alpha-hemolysin translocation ATP-binding protein ... [more]
HLYB_ECOL68.928e-2128.31Alpha-hemolysin translocation ATP-binding protein ... [more]
AB18B_ARATH8.928e-2127.03ABC transporter B family member 18 OS=Arabidopsis ... [more]
YKNU_BACSU1.166e-2026.79Uncharacterized ABC transporter ATP-binding protei... [more]
Y1799_STAAB1.166e-2026.61Putative multidrug export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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