FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_RALEJ (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia eutropha (strain JMP134) GN=msbA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21 Identity = 60/212 (28.30%), Postives = 106/212 (50.00%), Query Frame = 1 Query: 67 RYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD----PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690 RY L GI P + +VG +GSGK+TL+ + R +P R +++ + QD V+F TV +NV EE ++ AL L + V+ +++ + +NG S GQRQ + + R + K IL+LDEAT+++D+ ++ +Q +L T + IAHR++++ ++D +++L HG + E+ Sbjct: 355 RYGEGTRPALEGIDIRVPAGEVVALVGPSGSGKTTLVNLVPRFFDPTDGRILLDGHAIGDIALRELRNQIAFVSQDVVLFNDTVAANVAYGARSEEEIDMARVERALQAAYLTEVVKNLPEGVNTNIGDNGMKLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERQVQAALEALMVGRTTLVIAHRLSTIENADRIVVLDHGRVAEH 566
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSEA6 (Lipid A export ATP-binding/permease protein msbA OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=msbA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21 Identity = 63/219 (28.77%), Postives = 107/219 (48.86%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 GK++ RD+ Y L +S T K +VGR+GSGKST+ L R + R + +++ Q +F T+ +N+ E T EQ+ A + + + +++ + ENG S GQRQ + + R +L +L+LDEAT+++DT ++ LIQ +L D T I +AHR++++ +D +L++ G I E Sbjct: 338 GKLEFRDVTFHYPNKEEAALSDMSFTVEPGKTFALVGRSGSGKSTISSLLTRFYDAQQGTILLDDVPLQDFKLKDLRRQFALVSQHVTLFNDTIANNIAYGSEGRVTPEQVLAAAKTAHALEFIEQLPNGMETLIGENGLMLSGGQRQRLAIARAVLLDAPVLILDEATSALDTESERLIQDALETLQQDRTSIVVAHRLSTIESADQILVIERGRILE 556
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_NITOC (Lipid A export ATP-binding/permease protein msbA OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=msbA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21 Identity = 65/221 (29.41%), Postives = 105/221 (47.51%), Query Frame = 1 Query: 31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 + G I L Y P VL I + +VG +GSGKSTL+ L R E + R +++++ Q ++F T+ N+ ++ + + I A + + + + LD+ + E G S GQRQ + + R LLK IL+LDEATAS+DT + IQ +L T + IAHR+++V ++D +++L G I E Sbjct: 339 ARGAIRFEHLSFCYEPAKGPVLENIDLEIKPYQTIALVGHSGSGKSTLVSLLARFYETTSGRILIDEMDIQTLRLTELRRQIALVSQQIILFNDTIAHNIAYGSYQQTSKQDIIRAAEAAHAMEFINRLPDGLDTVIGEKGVLLSGGQRQRLAIARALLKDAPILILDEATASLDTEAERHIQAALETLMRQRTTLVIAHRLSTVENADQIIVLHQGQIIE 559
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BURXL (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia xenovorans (strain LB400) GN=msbA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21 Identity = 65/225 (28.89%), Postives = 111/225 (49.33%), Query Frame = 1 Query: 31 SHGKIDLRDLQVRY---APHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 +HG ++ RD+ Y A H L IS + + G +GSGK+TL+ L R +P R++++++ QD V+F TV +NV + ++ AL L D V +++ V +NG S GQRQ + + R + K IL+LDEAT+++D+ ++ +Q +L T + IAHR++++ +D +L++ G I E S Sbjct: 349 AHGAVEFRDVSFVYSGNATHNRHTLDQISFRVAPGEMIALAGPSGSGKTTLVNLLPRFFDPTGGQILVDGVAIPEYDLHALRSQIAMVSQDVVLFNDTVANNVAYGQTADAGKVKAALRAANLWDTVEAMPKGIETLVGDNGMMLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVMEAGRIVESGS 573
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDR3_HUMAN (Multidrug resistance protein 3 OS=Homo sapiens GN=ABCB4 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21 Identity = 61/222 (27.48%), Postives = 112/222 (50.45%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 G ++ D+ Y +L+G++ + +VG +G GKST +Q + R+ +P R + ++ Q+PV+F T+ N+ T ++I +A+ + + + K K D+ V E G S GQ+Q + + R L++ KIL+LDEAT+++DT ++ +Q +L + T I IAHR+++V ++D++ G+I E S Sbjct: 392 GNLEFNDVHFSYPSRANVKILKGLNLKVQSGQTVALVGSSGCGKSTTVQLIQRLYDPDEGTINIDGQDIRNFNVNYLREIIGVVSQEPVLFSTTIAENICYGRGNVTMDEIKKAVKEANAYEFIMKLPQKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGS 613 HSP 2 Score: 99.3673 bits (246), Expect = 1.989e-20 Identity = 55/210 (26.19%), Postives = 113/210 (53.81%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXX-------RTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690 VL+G+S + +VG +G GKST++Q L R +P A R +L I+ Q+P++F+ ++ N+ D + ++I A + + K +++V + G S GQ+Q + + R L+++ +IL+LDEAT+++DT ++ ++Q++L + T I IAHR++++ ++D++++ +G ++E+ Sbjct: 1051 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGTVFVDFGFQLLDGQEAKKLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSQDEIVSAAKAANIHPFIETLPHKYETRVGDKGTQLSGGQKQRIAIARALIRQPQILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEH 1260
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HLYB_PROVU (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Proteus vulgaris GN=hlyB PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21 Identity = 64/221 (28.96%), Postives = 112/221 (50.68%), Query Frame = 1 Query: 34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +G I R+++ RY P P +L I+ + GIVGR+GSGKSTL + + R P R ++ ++ QD V+ ++ N+ DP E++ A D + + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I +++ + TVI IAHR+++V ++D ++++ G I E Sbjct: 465 NGDISFRNIRFRYKPDAPIILNNINLNIKQGEIIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNIALADP--GMPVEKVIHAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICQGRTVIIIAHRLSTVKNADRIIVMEKGQIIE 683
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HLYB_ECOL6 (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli O6 GN=hlyB PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21 Identity = 62/219 (28.31%), Postives = 112/219 (51.14%), Query Frame = 1 Query: 34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +G I R+++ RY P P +L I+ + + GIVGR+GSGKSTL + + R P R ++ ++ QD V+ ++ N+ + E++ A D + + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I +++ + TVI IAHR+++V ++D ++++ G I E Sbjct: 465 NGNITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHIIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 683
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB18B_ARATH (ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21 Identity = 60/222 (27.03%), Postives = 109/222 (49.10%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVL--RGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+I ++ Y P P V+ + S K T IVG +GSGKST+I + R +P R ++++ Q+P +F GT+R N+ + + +I EA D + D+ + G S GQ+Q + + R +LK +L+LDEAT+++D+ +++++Q +L + T + IAHR++++ D + +L +G + E Sbjct: 978 GQISFSNVDFAY-PTRPDVIIFQNFSIDIEDGKSTAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQHIALVSQEPTLFAGTIRENIMYGGASNKIDESEIIEAAKAANAHDFITSLSNGYDTCCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAHRLSTIQKCDTIAVLENGAVVE 1198 HSP 2 Score: 97.8265 bits (242), Expect = 5.787e-20 Identity = 58/225 (25.78%), Postives = 117/225 (52.00%), Query Frame = 1 Query: 31 SHGKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV-DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 + G+++ ++ Y P P + + P K +VG +GSGKST+I L R +P A R+++ ++ Q+PV+F +++ N+ E+ + +++ EA + + ++V E G S GQ+Q + + R ++K IL+LDEAT+++D+ ++ ++Q++L T I IAHR++++ ++D++ ++ +G I E S Sbjct: 343 TRGEVEFNHVKFTYPSRPETP-IFDDLCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGLPINKLQVKWLRSQMGLVSQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSYQTQVGERGVQLSGGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRTTIVIAHRLSTIRNADVICVVHNGRIIETGS 566
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: YKNU_BACSU (Uncharacterized ABC transporter ATP-binding protein yknU OS=Bacillus subtilis GN=yknU PE=3 SV=3) HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20 Identity = 60/224 (26.79%), Postives = 108/224 (48.21%), Query Frame = 1 Query: 19 HSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 H G + +++ + Y L +S K G++G TGSGKS++ Q L R P R+ + ++ Q+ +F T+RSN+ + + E + EA + Q + + + D+ + E G S GQ+Q + + R + IL+LD+AT++VD T++ IQ +L++ + T +AHRI+S+ +D +L+ + G I E Sbjct: 327 HKQKLTGDVHFKNVSLAYGKEQTNALCNVSFEANSGKVIGLLGPTGSGKSSVTQLLTRFYSPVGGMITIDHKPITDYSLKTLRSNIGVVLQESFLFSSTIRSNISYGRPDASMEDVIEAAKRAQAHNFIMELPDGYDTMLGERGMGLSGGQKQRIAIARAICLNPSILILDDATSAVDMQTEHSIQLALKEVMKNRTTFIVAHRISSLKHADEILVFNKGRIRE 550
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1799_STAAB (Putative multidrug export ATP-binding/permease protein SAB1799c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1799c PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20 Identity = 58/218 (26.61%), Postives = 111/218 (50.92%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+ID+ + +Y + +L+ I+ + + VG +G GKSTLI + R + + R ++ ++ QD ++F TV+ N+ TDE++ E D + D++V E G S GQ+Q + + R+ L IL+LDEAT+++D ++++IQ++L D T + +AHR++++ +D ++++ +G I E Sbjct: 338 GRIDIYHVNFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEVAKVANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |