FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_AGRVI (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Agrobacterium vitis GN=ndvA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 65/218 (29.82%), Postives = 107/218 (49.08%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ R +   +A     V + +S T    +   IVG TG+GK+TLI  L R+ EP                    R  ++ + QD  +   ++  N+    E  TDE I +A +     D +  +    D+ V E G   S G+RQ + + R +LK   IL+LDEAT+++D  T+  ++ ++ +   + T   IAHR+++V ++D VL L HG I E
Sbjct:  333 GDVEFRHVSFDFANTTQGV-KDVSFTVKAGQTIAIVGPTGAGKTTLINLLQRVHEPQQGQILIDGADISTITRQSLRNSIATVFQDAGILNRSIADNIRIGRENATDEDIVKAAEAAAATDFIESRLSGFDTDVGERGNRLSGGERQRIAIARAILKDAPILVLDEATSALDVETEERVKSAIDRLRQNRTTFIIAHRLSTVREADQVLFLDHGRIVE 549          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BURCA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia cenocepacia (strain AU 1054) GN=msbA PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 67/223 (30.04%), Postives = 112/223 (50.22%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRY-APHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            + G+I+ R +   Y A   P + R      PGE    + G +GSGK+TL+  L R  +P                    R++++++ QD V+F  T+ +NV   +     ++  AL+   L D V      LD+ V  NG   S GQRQ + + R + K   IL+LDEAT+++D+ ++  +Q +L +     T + IAHR++++  +D +L+L  G I E  S
Sbjct:  348 ARGEIEFRAVSFDYGAAERPTLDRISFKVAPGEM-IALAGPSGSGKTTLVNLLPRFFDPTDGTILVDGVPVSDYDLHALRSQMAMVSQDVVLFNDTIAANVAYGQTPDRARVQAALEAANLADAVAAMPDGLDTLVGGNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALERLMEGRTTLVIAHRLSTIERADRILVLEAGKIVEEGS 569          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HLYB3_ECOLX (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli GN=hlyB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 62/219 (28.31%), Postives = 112/219 (51.14%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +G I  R+++ RY P  P +L  I+ +    +  GIVGR+GSGKSTL + + R   P                    R ++ ++ QD V+   ++  N+       + E++  A       D + +     ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I +++ +     TVI IAHR+++V ++D ++++  G I E
Sbjct:  465 NGDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHIIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 683          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_RHOFD (Lipid A export ATP-binding/permease protein msbA OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=msbA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 62/221 (28.05%), Postives = 108/221 (48.87%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            S G+I   ++ +RY     F L  IS      +   +VG +G GKST+   + R     +                  R  ++++ Q+ ++F  TV +N+    L+  + + +  A       D + +    LD+ + ENG   S GQRQ + + R LLK   IL+LDEAT+++DT ++  +Q +L     + T + IAHR++++  +D +L+L  G I E
Sbjct:  339 SKGEICFDNVSLRYLGAERFALNDISFRITAGQTVALVGASGGGKSTISALIPRFYPVTSGRVLVDGIDINDITLASLRQNIALVSQNVILFNDTVGANIAYGSLQTCSRDDVIRAARAANAWDFIEQLPNGLDTPIGENGAKLSGGQRQRLAIARALLKDAPILILDEATSALDTESERQVQAALAVLMKNRTTLVIAHRLSTIEHADCILVLDQGRIVE 559          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSEPF (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf0-1) GN=msbA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 68/219 (31.05%), Postives = 108/219 (49.32%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G++D+R+L   Y      VL  IS +    +   +VGR+GSGKSTL   + R                        R  ++ + Q   +F  TV +N+    L     E I +A       D + +    LD++V ENG   S GQRQ + + R LLK   +L+LDEAT+++DT ++  IQ +L Q     T + IAHR++++  +D++L++  G I E
Sbjct:  352 GRLDVRNLSFTYPGTERQVLDDISFSVEPGQMVALVGRSGSGKSTLANLIPRFYHHDKGEILIDGVEVEQYKLLNLRRHIAQVTQHVTLFSDTVANNIAYGDLAGAPREDIEKAARDAYAMDFIAQLPEGLDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDQVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVE 570          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HLYBP_ECOLX (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli GN=hlyB PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 62/219 (28.31%), Postives = 112/219 (51.14%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +G I  R+++ RY P  P +L  I+ +    +  GIVGR+GSGKSTL + + R   P                    R ++ ++ QD V+   ++  N+       + E++  A       D + +     ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I +++ +     TVI IAHR+++V ++D ++++  G I E
Sbjct:  465 NGDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 683          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HLYBC_ECOLX (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli GN=hlyB PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 62/219 (28.31%), Postives = 112/219 (51.14%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +G I  R+++ RY P  P +L  I+ +    +  GIVGR+GSGKSTL + + R   P                    R ++ ++ QD V+   ++  N+       + E++  A       D + +     ++ V E G   S GQRQ + + R L+   KIL+ DEAT+++D  ++++I +++ +     TVI IAHR+++V ++D ++++  G I E
Sbjct:  465 NGDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 683          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB15B_ARATH (ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 60/222 (27.03%), Postives = 110/222 (49.55%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVL--RGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+++  D+   Y P  P V+  +  S      K T IVG +GSGKST+I  + R  +P                    R  ++++ Q+P +F GT+R N+      ++  + +I EA       D +       D+   + G   S GQ+Q + + R +LK   +L+LDEAT+++D+ ++ ++Q +L +     T + IAHR++++ + D + +L  G + E
Sbjct:  993 GQVEFLDVDFSY-PTRPDVIIFKNFSIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDTYCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRTSVVIAHRLSTIQNCDAIAVLDKGKLVE 1213          

HSP 2 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 57/222 (25.68%), Postives = 117/222 (52.70%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV-DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G+++ ++++  Y   +   +    C   P  K   +VG +GSGKST+I  L R  +P A                  R+++ ++ Q+P +F  T++ N+    E+ + + + EA       + + +     +++V E G   S GQ+Q + + R ++K   IL+LDEAT+++D+ ++ ++Q++L       T I IAHR++++ ++D++ ++ +G I E  S
Sbjct:  357 GEVEFKNVKFVYPSRLETSIFDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVSIDKLQVKWLRSQMGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYETQVGERGVQMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAHRLSTIRNADVISVVKNGHIVETGS 578          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y663_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI0663 OS=Haemophilus influenzae GN=HI0663 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 60/218 (27.52%), Postives = 114/218 (52.29%), Query Frame = 1
Query:   40 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEE 687
            +++++DL   Y+   P  + G++ +    + +  VG++G GKSTL+  L    +                       ++S++     +F+GT+R N+   + + TDEQI+  L++  L   VR   G LD ++   G N S GQ Q + L R LL   ++ + DEAT+++D  ++ +I Q ++Q     T++ I+HR+ + +++D + +L  G LIE+
Sbjct:  313 QVEIKDLHFSYSEEKP-AITGLNLSILPNQLSVFVGKSGCGKSTLVSLLMGFNKAQQGEILFNGQNALNIDRTSFYQKVSLVSHSSYVFKGTLRENMTMAKIDATDEQIYACLEQVNLAQFVRDNGG-LDMQLLSRGANLSGGQIQRLALARALLHNAELYIFDEATSNIDVESEEIILQFIQQFKQQKTIVMISHRLANAVNADCINVLDQGKLIEQ 528          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_NITWN (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=ndvA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 64/231 (27.71%), Postives = 113/231 (48.92%), Query Frame = 1
Query:    4 KSRPNHSWPSH--GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            + RP+   P    G+++  D+   Y    P V        PGE    +VG TG+GKST +  L R  +P +                  R  + ++ Q+P++F  ++  N+   + + TDE++  A  + Q  D + + E K D+   E G   S G+RQ + + R LLK   IL+LDEAT+++D  T+  +  +L +     T   IAHR++++ ++  +L+ + G + E
Sbjct:  330 RDRPDAVDPGRLQGRVEFNDVSFSYDSKRPAVANLSFVASPGET-IALVGPTGAGKSTAVALLHRAFDPQSGIIRIDGMDIRDLTLSGLRRNIGVVFQEPLLFNRSIAENLRVGKPDATDEEMRLAAGRAQALDFIERGEKKFDTHAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNAALDEVMKGRTTFVIAHRLSTIRNAARILVFADGRVIE 559          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
NDVA_AGRVI1.166e-2029.82Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_BURCA1.166e-2030.04Lipid A export ATP-binding/permease protein msbA O... [more]
HLYB3_ECOLX1.166e-2028.31Alpha-hemolysin translocation ATP-binding protein ... [more]
MSBA_RHOFD1.523e-2028.05Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEPF1.523e-2031.05Lipid A export ATP-binding/permease protein msbA O... [more]
HLYBP_ECOLX1.523e-2028.31Alpha-hemolysin translocation ATP-binding protein ... [more]
HLYBC_ECOLX1.523e-2028.31Alpha-hemolysin translocation ATP-binding protein ... [more]
AB15B_ARATH1.523e-2027.03ABC transporter B family member 15 OS=Arabidopsis ... [more]
Y663_HAEIN1.989e-2027.52Uncharacterized ABC transporter ATP-binding protei... [more]
NDVA_NITWN1.989e-2027.71Beta-(1-->2)glucan export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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