FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_AGRVI (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Agrobacterium vitis GN=ndvA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20 Identity = 65/218 (29.82%), Postives = 107/218 (49.08%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R + +A V + +S T + IVG TG+GK+TLI L R+ EP R ++ + QD + ++ N+ E TDE I +A + D + + D+ V E G S G+RQ + + R +LK IL+LDEAT+++D T+ ++ ++ + + T IAHR+++V ++D VL L HG I E Sbjct: 333 GDVEFRHVSFDFANTTQGV-KDVSFTVKAGQTIAIVGPTGAGKTTLINLLQRVHEPQQGQILIDGADISTITRQSLRNSIATVFQDAGILNRSIADNIRIGRENATDEDIVKAAEAAAATDFIESRLSGFDTDVGERGNRLSGGERQRIAIARAILKDAPILVLDEATSALDVETEERVKSAIDRLRQNRTTFIIAHRLSTVREADQVLFLDHGRIVE 549
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BURCA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia cenocepacia (strain AU 1054) GN=msbA PE=3 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20 Identity = 67/223 (30.04%), Postives = 112/223 (50.22%), Query Frame = 1 Query: 31 SHGKIDLRDLQVRY-APHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 + G+I+ R + Y A P + R PGE + G +GSGK+TL+ L R +P R++++++ QD V+F T+ +NV + ++ AL+ L D V LD+ V NG S GQRQ + + R + K IL+LDEAT+++D+ ++ +Q +L + T + IAHR++++ +D +L+L G I E S Sbjct: 348 ARGEIEFRAVSFDYGAAERPTLDRISFKVAPGEM-IALAGPSGSGKTTLVNLLPRFFDPTDGTILVDGVPVSDYDLHALRSQMAMVSQDVVLFNDTIAANVAYGQTPDRARVQAALEAANLADAVAAMPDGLDTLVGGNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALERLMEGRTTLVIAHRLSTIERADRILVLEAGKIVEEGS 569
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HLYB3_ECOLX (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli GN=hlyB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20 Identity = 62/219 (28.31%), Postives = 112/219 (51.14%), Query Frame = 1 Query: 34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +G I R+++ RY P P +L I+ + + GIVGR+GSGKSTL + + R P R ++ ++ QD V+ ++ N+ + E++ A D + + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I +++ + TVI IAHR+++V ++D ++++ G I E Sbjct: 465 NGDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHIIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 683
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_RHOFD (Lipid A export ATP-binding/permease protein msbA OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=msbA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20 Identity = 62/221 (28.05%), Postives = 108/221 (48.87%), Query Frame = 1 Query: 31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 S G+I ++ +RY F L IS + +VG +G GKST+ + R + R ++++ Q+ ++F TV +N+ L+ + + + A D + + LD+ + ENG S GQRQ + + R LLK IL+LDEAT+++DT ++ +Q +L + T + IAHR++++ +D +L+L G I E Sbjct: 339 SKGEICFDNVSLRYLGAERFALNDISFRITAGQTVALVGASGGGKSTISALIPRFYPVTSGRVLVDGIDINDITLASLRQNIALVSQNVILFNDTVGANIAYGSLQTCSRDDVIRAARAANAWDFIEQLPNGLDTPIGENGAKLSGGQRQRLAIARALLKDAPILILDEATSALDTESERQVQAALAVLMKNRTTLVIAHRLSTIEHADCILVLDQGRIVE 559
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSEPF (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf0-1) GN=msbA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20 Identity = 68/219 (31.05%), Postives = 108/219 (49.32%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G++D+R+L Y VL IS + + +VGR+GSGKSTL + R R ++ + Q +F TV +N+ L E I +A D + + LD++V ENG S GQRQ + + R LLK +L+LDEAT+++DT ++ IQ +L Q T + IAHR++++ +D++L++ G I E Sbjct: 352 GRLDVRNLSFTYPGTERQVLDDISFSVEPGQMVALVGRSGSGKSTLANLIPRFYHHDKGEILIDGVEVEQYKLLNLRRHIAQVTQHVTLFSDTVANNIAYGDLAGAPREDIEKAARDAYAMDFIAQLPEGLDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDQVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVE 570
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HLYBP_ECOLX (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli GN=hlyB PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20 Identity = 62/219 (28.31%), Postives = 112/219 (51.14%), Query Frame = 1 Query: 34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +G I R+++ RY P P +L I+ + + GIVGR+GSGKSTL + + R P R ++ ++ QD V+ ++ N+ + E++ A D + + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I +++ + TVI IAHR+++V ++D ++++ G I E Sbjct: 465 NGDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 683
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HLYBC_ECOLX (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli GN=hlyB PE=3 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20 Identity = 62/219 (28.31%), Postives = 112/219 (51.14%), Query Frame = 1 Query: 34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +G I R+++ RY P P +L I+ + + GIVGR+GSGKSTL + + R P R ++ ++ QD V+ ++ N+ + E++ A D + + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I +++ + TVI IAHR+++V ++D ++++ G I E Sbjct: 465 NGDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 683
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB15B_ARATH (ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20 Identity = 60/222 (27.03%), Postives = 110/222 (49.55%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVL--RGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+++ D+ Y P P V+ + S K T IVG +GSGKST+I + R +P R ++++ Q+P +F GT+R N+ ++ + +I EA D + D+ + G S GQ+Q + + R +LK +L+LDEAT+++D+ ++ ++Q +L + T + IAHR++++ + D + +L G + E Sbjct: 993 GQVEFLDVDFSY-PTRPDVIIFKNFSIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDTYCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRTSVVIAHRLSTIQNCDAIAVLDKGKLVE 1213 HSP 2 Score: 98.9821 bits (245), Expect = 2.598e-20 Identity = 57/222 (25.68%), Postives = 117/222 (52.70%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCT-FPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV-DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 G+++ ++++ Y + + C P K +VG +GSGKST+I L R +P A R+++ ++ Q+P +F T++ N+ E+ + + + EA + + + +++V E G S GQ+Q + + R ++K IL+LDEAT+++D+ ++ ++Q++L T I IAHR++++ ++D++ ++ +G I E S Sbjct: 357 GEVEFKNVKFVYPSRLETSIFDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVSIDKLQVKWLRSQMGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYETQVGERGVQMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAHRLSTIRNADVISVVKNGHIVETGS 578
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y663_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI0663 OS=Haemophilus influenzae GN=HI0663 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20 Identity = 60/218 (27.52%), Postives = 114/218 (52.29%), Query Frame = 1 Query: 40 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEE 687 +++++DL Y+ P + G++ + + + VG++G GKSTL+ L + ++S++ +F+GT+R N+ + + TDEQI+ L++ L VR G LD ++ G N S GQ Q + L R LL ++ + DEAT+++D ++ +I Q ++Q T++ I+HR+ + +++D + +L G LIE+ Sbjct: 313 QVEIKDLHFSYSEEKP-AITGLNLSILPNQLSVFVGKSGCGKSTLVSLLMGFNKAQQGEILFNGQNALNIDRTSFYQKVSLVSHSSYVFKGTLRENMTMAKIDATDEQIYACLEQVNLAQFVRDNGG-LDMQLLSRGANLSGGQIQRLALARALLHNAELYIFDEATSNIDVESEEIILQFIQQFKQQKTIVMISHRLANAVNADCINVLDQGKLIEQ 528
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_NITWN (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=ndvA PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20 Identity = 64/231 (27.71%), Postives = 113/231 (48.92%), Query Frame = 1 Query: 4 KSRPNHSWPSH--GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 + RP+ P G+++ D+ Y P V PGE +VG TG+GKST + L R +P + R + ++ Q+P++F ++ N+ + + TDE++ A + Q D + + E K D+ E G S G+RQ + + R LLK IL+LDEAT+++D T+ + +L + T IAHR++++ ++ +L+ + G + E Sbjct: 330 RDRPDAVDPGRLQGRVEFNDVSFSYDSKRPAVANLSFVASPGET-IALVGPTGAGKSTAVALLHRAFDPQSGIIRIDGMDIRDLTLSGLRRNIGVVFQEPLLFNRSIAENLRVGKPDATDEEMRLAAGRAQALDFIERGEKKFDTHAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNAALDEVMKGRTTFVIAHRLSTIRNAARILVFADGRVIE 559 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |