FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_CHRVO (Lipid A export ATP-binding/permease protein msbA OS=Chromobacterium violaceum GN=msbA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20 Identity = 59/199 (29.65%), Postives = 103/199 (51.76%), Query Frame = 1 Query: 94 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 L GI + +VG +GSGK+TL + R EP+A R ++++ Q +F TV +N+ E+ + E+I EA + + L++ + ENG S GQRQ + + R LLK +L+LDEAT+++DT ++ L+Q +L + T I IAHR++++ ++D ++++ G + E Sbjct: 358 LSGIDLEIQPGETVALVGSSGSGKTTLASLVPRFYEPSAGRLLLDGVPLADIPLRQLRGHIALVSQQVELFNDTVAANIAYGREDASREEIVEAARAANAMEFIEGLPDGLETVIGENGARLSGGQRQRLAIARALLKNAPLLILDEATSALDTQSERLVQAALENLMKNRTTIVIAHRLSTIENADRIVVMHQGRLAE 556
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB22B_ARATH (ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20 Identity = 62/232 (26.72%), Postives = 114/232 (49.14%), Query Frame = 1 Query: 10 RPNHSWPSHGKIDLRDLQVRYA-PHMPFVL--RGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +P+ P + K ++ + V +A P P V+ + S K T IVG +GSGKST+I + R +P R + ++ Q+P++F GT+R N+ ++ + +I EA D + D+ + G S GQ+Q + + R +LK +L+LDEAT+++D ++ ++Q +L + T + IAHR++++ + D + +L G + E Sbjct: 1004 KPDGFVPQNIKGQIKFVNVDFAYPTRPDVIIFKNFSIDIDEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIGLVSQEPILFAGTIRENIMYGGASDKIDESEIIEAAKAANAHDFIVTLSDGYDTYCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDNQSERMVQDALGRLMVGRTSVVIAHRLSTIQNCDTITVLDKGKVVE 1235 HSP 2 Score: 94.3597 bits (233), Expect = 6.398e-19 Identity = 56/223 (25.11%), Postives = 113/223 (50.67%), Query Frame = 1 Query: 37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV-DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 G++ + ++ Y+ P P + + P K +VG +GSGKST+I L R +P R+++ ++ Q+P +F ++ N+ E+ + +++ EA D + + ++V E G S GQ+Q + + R ++K +L+LDEAT+++D+ ++ ++Q++L T I IAHR++++ + D++ + +G I E S Sbjct: 377 GEVQFKHVKFMYSSRPETP-IFDDLCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEILIDGVSIKKLQVKWLRSQMGLVSQEPALFATSIEENILFGKEDASFDEVVEAAKSSNAHDFISQFPLGYKTQVGERGVQMSGGQKQRISIARAIIKSPTLLLLDEATSALDSESERVVQEALDNATIGRTTIVIAHRLSTIRNVDVICVFKNGQIVETGS 598
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y696_RICPR (Putative export ATP-binding/permease protein RP696 OS=Rickettsia prowazekii GN=RP696 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20 Identity = 58/196 (29.59%), Postives = 104/196 (53.06%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 675 V+ +S K GIVGR+G+GKSTLIQ L R R ++ +PQ+ +F T++SN+ + +D +I E + + + K +++K+ E G S GQ+Q + + R LL++ KIL+LDEA +++DT ++ + ++++ +I+IAHRI+S+ +D +L++ G Sbjct: 353 VINNMSLKINSNKFVGIVGRSGAGKSTLIQLLLRFYRQENGTILINNQDISFVKPTDIRKFIAYVPQEASIFSDTIKSNIIFGNNKASDYEINEIIKITGIEEFSTKLHDGINTKIGEKGVRLSGGQKQRIAIARALLRKPKILLLDEAMSALDTMSEQKLLNAIKKIMKGNIIISIAHRISSIESADYILVIDKG 548
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y691_RICTY (Putative export ATP-binding/permease protein RT0691 OS=Rickettsia typhi GN=RT0691 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20 Identity = 57/198 (28.79%), Postives = 105/198 (53.03%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681 ++ +S K GIVGR+G+GKSTLIQ L R R ++ +PQ+ +F T++SN+ + +D +I E + + + K +++K+ E G S GQ+Q + + R LL++ KIL+LDEA +++DT ++ + ++++ +I+IAHRI+S+ +D +L++ G + Sbjct: 353 IINNMSLKINANKFVGIVGRSGAGKSTLIQLLLRFYRQDNGTILINNQDISRINPTDIRKFIAYVPQEASIFSDTIKSNIIFGNNKASDYEINEIIKITGIEEFSNKLHDGINTKIGEKGVRLSGGQKQRIAIARALLRKPKILLLDEAMSALDTMSEQKLLNAIKKIMKGNIIISIAHRISSIESADYILVIDKGKV 550
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_THIDA (Lipid A export ATP-binding/permease protein msbA OS=Thiobacillus denitrificans (strain ATCC 25259) GN=msbA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20 Identity = 63/224 (28.12%), Postives = 111/224 (49.55%), Query Frame = 1 Query: 28 PSH--GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 P+H G++ RD+ + Y L IS + +VG +GSGK+TL + R +P A R ++++ QD V+F T+ N+ E + ++I A D ++ LD+ + ENG S GQRQ + + R +LK IL+LDEAT+++D+ ++ +Q +L + T + IAHR++++ ++ +++L G I E Sbjct: 332 PAHIEGRLAFRDVGLTYPGKQTPALARISLDIAPGETVALVGASGSGKTTLANLVPRFYDPDAGRIELDGVDIRDVKLQSLRGHIALVSQDVVLFNDTLAHNIAYGSKREASPDEIRAACVAAHAWDFIQAMPDGLDTLIGENGMRLSGGQRQRIAIARAILKNAPILILDEATSALDSESERHVQAALETLMQNRTTLVIAHRLSTIERANRIVVLEGGRIVE 555
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: HEPA_ANASP (Heterocyst differentiation ATP-binding protein hepA OS=Anabaena sp. (strain PCC 7120) GN=hepA PE=2 SV=3) HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20 Identity = 58/200 (29.00%), Postives = 104/200 (52.00%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 VL I+ T K T +VG +G+GK+TL + R +P R +++++ QD +F ++R N+ ++ +I E + + D+K+ + G S GQRQ + + R LL+ +IL+LDEAT+++D+ ++ LIQ+S+ + TVI IAHR++++ +D V+++ G I E Sbjct: 379 VLNNITLTIERGKTTALVGASGAGKTTLADLIPRFYDPTEGQILVDGLDVQYFEINSLRRKMAVVSQDTFIFNTSIRDNIAYGTSGASEAEIREVARLANALQFIEEMPEGFDTKLGDRGVRLSGGQRQRIAIARALLRDPEILILDEATSALDSVSERLIQESIEKLSVGRTVIAIAHRLSTIAKADKVVVMEQGRIVE 578
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SYNAS (Lipid A export ATP-binding/permease protein msbA OS=Syntrophus aciditrophicus (strain SB) GN=msbA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20 Identity = 63/217 (29.03%), Postives = 110/217 (50.69%), Query Frame = 1 Query: 40 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 KI++R++ Y VLR I+ T + VG +G GK+TL+ + R + A R ++ I+ Q ++F TVR+N+ + ++++I EA D + D+ + E G S G+RQ + + R LLK IL+LDEAT+S+DT + +Q++L + T + IAHR++++ ++D +++L G I E Sbjct: 351 KIEIRNISFAYDDTP--VLRNINLTIRAGEVVAFVGMSGGGKTTLVNLIPRFYDVTAGQILIDGHDIRDVSLISLRRQIGIVTQQTILFNDTVRNNIAYGSQGCSEKEIIEAARAANAHDFIVNLPEGYDTVIGELGTKLSGGERQRISIARALLKNAPILILDEATSSLDTEAEMEVQEALERLMKGRTTLVIAHRLSTIRNADRIVVLVKGEIVE 565
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSEF5 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=msbA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20 Identity = 68/223 (30.49%), Postives = 109/223 (48.88%), Query Frame = 1 Query: 34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 +G +++R+L Y VL IS + K +VGR+GSGKSTL + R R ++ + Q +F TV +N+ L E I +A D + + LD++V ENG S GQRQ + + R LLK +L+LDEAT+++DT ++ IQ +L + T + IAHR++++ +D++L++ G I E S Sbjct: 351 NGHLEVRNLSFTYPGTERQVLDDISFSIEPGKMVALVGRSGSGKSTLANLIPRFYHHDKGQILLDGTEVEDFRLLNLRRHIAQVTQHVTLFSDTVANNIAYGDLAGAPREDIEKAAADAYAMDFIAQLPEGLDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDKVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGS 573
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_POLSJ (Lipid A export ATP-binding/permease protein msbA OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=msbA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20 Identity = 60/219 (27.40%), Postives = 108/219 (49.32%), Query Frame = 1 Query: 31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +HG I+ D+ V Y L S + + IVG +GSGK+TL+ L R VE ++ R + + + Q VM ++ NV + ++ E L L + + G +D+ + N S GQRQ + + R L K IL+LDEAT+++DT ++ +Q+++++ + T + IAHR+++V +D ++++ G + E Sbjct: 346 AHGDIEFADVSVIYKADAAAALDQFSLSIKAGETLAIVGASGSGKTTLVNLLPRFVEMSSGNIYLDGQDLRAWNLASLRAQFAFVSQHVVMLNNSIAVNVALGQPVDRARVTECLAAANLSGLLAELPGGIDTILGHNAMQLSGGQRQRLAIARALYKNAPILVLDEATSALDTESELAVQEAIKRLTASRTSLVIAHRLSTVQHADRIIMMEAGRMIE 564
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_COXBU (Lipid A export ATP-binding/permease protein msbA OS=Coxiella burnetii GN=msbA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20 Identity = 63/225 (28.00%), Postives = 105/225 (46.67%), Query Frame = 1 Query: 19 HSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 H + G I+ + + Y +L IS + + IVGR+G+GKSTLI L R + + R + ++ Q +F T+ +N+ +I EA + + + LD+ + ENG S GQRQ + + R L K I +LDEAT+S+DT ++ IQ +L CT + IAHR++++ +D +++L G + E Sbjct: 331 HLVRARGAIEYQGVSFAYDNSKKTILSEISFSIEPGQMVAIVGRSGAGKSTLINLLPRFYDASTGVIKIDDINIKEFRLQELRNQFGLVSQHTTLFNDTILNNIAYGQAGSIDKRKIIEAARAAHAMEFIEQLPEGLDTVIGENGVRLSGGQRQRIAIARALFKNAPIHILDEATSSLDTHSERHIQAALDNLMDQCTTLVIAHRLSTIERADWIMVLEEGRLIE 555 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |