FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_RALME (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=msbA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 61/226 (26.99%), Postives = 110/226 (48.67%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            + G +   ++  RY       L  +S      +   +VG +GSGK+TL+  + R  +P                    R +++ + QD V+F  TV +NV     P E+    ++  AL    L D V+     L++ + +NG   S GQRQ + + R + K   IL+LDEAT+++D+ ++  +Q +L       T + IAHR++++ ++D +++L  G + E  S
Sbjct:  346 ARGDLVFDNVGFRYGDAARAALNHVSLRAAPGEVVALVGPSGSGKTTLVNLVPRFFDPTEGHILLDGQPIDRFALADLRRQIAFVSQDVVLFNDTVAANVAYGVHPREKIDMARVERALAAAYLTDVVKGLPEGLETNIGDNGMKLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERQVQAALESLMVGRTTLVIAHRLSTIENADRIVVLEQGRVAEQGS 571          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB27B_ARATH (ABC transporter B family member 27 OS=Arabidopsis thaliana GN=ABCB27 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 63/223 (28.25%), Postives = 109/223 (48.88%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++L D+   Y P  P   +L+GIS       K  +VG +G GK+T+   + R  +P                      ++SI+ Q+P++F  +V  N+    D    +TD  I  A       + +     K ++ V E G   S GQ+Q + + R LL    +L+LDEAT+++D  ++ L+Q ++    +  TV+ IAHR+++V  +D V ++S G + E
Sbjct:  394 GDVELNDVWFAY-PSRPSHMILKGISLRLTPGSKVALVGPSGGGKTTIANLIERFYDPLKGKILLNGVSLMEISHQYLHKQISIVSQEPILFNCSVEENIAYGFDGEASFTD--IENAAKMANAHEFIEAFPDKYNTVVGERGLRLSGGQKQRIAIARALLTNPSVLLLDEATSALDAESEYLVQDAMDSLMAGRTVLVIAHRLSTVKTADCVAVISDGEVAE 613          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHIEC (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ndvA PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 60/218 (27.52%), Postives = 107/218 (49.08%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I+ RD+   +  +    L  +S +    +   IVG TG+GK+TL+  L R+ +P                    R  ++ + QD  +   ++  N+    E  ++E +  A +     D +  +E + D+ V E G   S G+RQ + + R +LK   IL+LDEAT+++D  T+  ++ ++     + T   IAHR+++V ++DMVL L  G + E
Sbjct:  333 GAIEFRDVSFGFG-NSSQGLHNVSFSVKAGQTVAIVGPTGAGKTTLVNLLQRVYDPQGGQILVDGTDITKVTRKSLRRHIATVFQDAGLLNRSISDNIRLGREGASEEDMRRAAEAAAAADFIETREDRYDTHVGERGNKLSGGERQRIAIARAILKDAPILVLDEATSALDVETEARVKAAIDNLRQNRTTFIIAHRLSTVREADMVLFLDDGRVVE 549          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_BARHE (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella henselae GN=ndvA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 64/194 (32.99%), Postives = 102/194 (52.58%), Query Frame = 1
Query:  124 EKKTG----IVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEE 687
            E KTG    IVG TG+GK+TLI  L RI +P                    R  L+ + QD  +F  T+  N+       T+E+++EA       D + KK  + ++ + E G   S G++Q + + R +LK   IL+LDEAT+++D  T+  ++ +L     + T   IAHR+++V ++D+VL L  G LIE+
Sbjct:  357 EVKTGQTVAIVGPTGAGKTTLINLLQRIYDPTLGHISIDGINIRSVNRESLRKSLATVFQDAGLFNRTIHDNISIGRTTATNEELYEAAKIAAAHDFILKKTDRYNTMIGEQGSQLSGGEKQRLAIARAVLKNAPILILDEATSALDVETEARVKDALDCISHNRTTFIIAHRLSTVRNADLVLFLEQGHLIEK 550          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SODGM (Lipid A export ATP-binding/permease protein msbA OS=Sodalis glossinidius (strain morsitans) GN=msbA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 61/200 (30.50%), Postives = 104/200 (52.00%), Query Frame = 1
Query:   94 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            L  IS + P      +VGR+GSGKST+   L R  +                     R +++++ Q+  +F  T+ +N+    +  Y+ +QI  A       D + K +  LD+ + ENG   S GQRQ + + R LL+   IL+LDEAT+++DT ++  IQ++L     + T + IAHR++++  +D +L++  G I E
Sbjct:  359 LHDISLSIPTGHTVALVGRSGSGKSTIANLLTRFYDIQQGQILLDGTDLRAYKLASLRNQVALVSQNVHLFNDTIANNIAYARKATYSRKQIENAARMAYAMDFIEKMDQGLDTVIGENGVLLSGGQRQRIAIARALLRDCPILILDEATSALDTESERAIQKALDALQKNRTSLVIAHRLSTIEKADEILVVVEGRIVE 558          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BURPS (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia pseudomallei GN=msbA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 58/193 (30.05%), Postives = 101/193 (52.33%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            PGE    + G +GSGK+TL+  L R  +P++                  R +++++ QD V+F  T+ +NV   +    +++  AL    L + V      +D+ V +NG   S GQRQ + + R + K   IL+LDEAT+++D+ ++  +Q +L       T + IAHR++++  +D +L+L  G I E  S
Sbjct:  381 PGEM-VALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYSLRDLRNQIAMVSQDVVLFNDTIAANVAYGQAPERDRVEAALRAANLWETVTAMPDGIDTLVGDNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGS 572          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BURP1 (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia pseudomallei (strain 1710b) GN=msbA PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 58/193 (30.05%), Postives = 101/193 (52.33%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            PGE    + G +GSGK+TL+  L R  +P++                  R +++++ QD V+F  T+ +NV   +    +++  AL    L + V      +D+ V +NG   S GQRQ + + R + K   IL+LDEAT+++D+ ++  +Q +L       T + IAHR++++  +D +L+L  G I E  S
Sbjct:  381 PGEM-VALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYSLRDLRNQIAMVSQDVVLFNDTIAANVAYGQAPERDRVEAALRAANLWETVTAMPDGIDTLVGDNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGS 572          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BURMA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia mallei GN=msbA PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 58/193 (30.05%), Postives = 101/193 (52.33%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            PGE    + G +GSGK+TL+  L R  +P++                  R +++++ QD V+F  T+ +NV   +    +++  AL    L + V      +D+ V +NG   S GQRQ + + R + K   IL+LDEAT+++D+ ++  +Q +L       T + IAHR++++  +D +L+L  G I E  S
Sbjct:  381 PGEM-VALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYSLRDLRNQIAMVSQDVVLFNDTIAANVAYGQAPERDRVEAALRAANLWETVTAMPDGIDTLVGDNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGS 572          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB16B_ARATH (ABC transporter B family member 16 OS=Arabidopsis thaliana GN=ABCB16 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 58/223 (26.01%), Postives = 117/223 (52.47%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV-DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G+++  +++ +Y P  P   +   +    P  K   +VG +GSGKST+I  L R  +P                    R+++ ++ Q+P +F  +++ N+    E+ + +++ EA       + + +      ++V E G + S GQ+Q + + R L+K   IL+LDEAT+++D  ++ ++Q++L       T I IAHR++++ ++D++ +L +G I E  S
Sbjct:  344 GEVEFNNVKCKY-PSRPETLIFDDLCLKIPSGKTVALVGGSGSGKSTVISLLQRFYDPNEGDILIDSVSINNMQVKWLRSQMGMVSQEPSLFATSIKENILFGKEDASFDEVVEAAKASNAHNFISQFPHGYQTQVGERGVHMSGGQKQRIAIARALIKSPIILLLDEATSALDLESERVVQEALDNASVGRTTIVIAHRLSTIRNADIICVLHNGCIVETGS 565          

HSP 2 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 53/190 (27.89%), Postives = 94/190 (49.47%), Query Frame = 1
Query:  127 KKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            K T IVG + SGKST+I  + R  +P                    R  +S++ Q+P +F GT+R N+       +  + +I EA       + +       D+   + G   S GQ+Q + + R +LK   IL+LDEAT+++D+ ++ ++Q +L       T + IAHR++++ + D + +L  G + E
Sbjct: 1010 KSTAIVGPSRSGKSTVIGLIERFYDPLQGIVKIDGRDIRSYHLRSLRQHMSLVSQEPTLFAGTIRENIMYGRASNKIDESEIIEAGKTANAHEFITSLSDGYDTYCGDRGVQLSGGQKQRIAIARTILKNPSILLLDEATSALDSQSERVVQDALEHVMVGKTSVVIAHRLSTIQNCDTIAVLDKGKVVE 1199          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAP2_HUMAN (Antigen peptide transporter 2 OS=Homo sapiens GN=TAP2 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 60/220 (27.27%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G +  +D+   Y   P  P VL+G++ T    + T +VG  GSGKST+   L  + +P                     +++  + Q+PV+F G+VR+N+   L+   D+++  A       D +++ E  + + V E G   + GQ+Q + + R L++  ++L+LDEAT+++D   +  +Q    +   D TV+ IAHR+ +V  +  +L+L  G +++
Sbjct:  466 GVVKFQDVSFAYPNRPDRP-VLKGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDEKPISQYEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGIYTDVGEKGSQLAAGQKQRLAIARALVRDPRVLILDEATSALDVQCEQALQDWNSR--GDRTVLVIAHRLQTVQRAHQILVLQEGKLQK 682          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MSBA_RALME7.558e-2026.99Lipid A export ATP-binding/permease protein msbA O... [more]
AB27B_ARATH7.558e-2028.25ABC transporter B family member 27 OS=Arabidopsis ... [more]
NDVA_RHIEC1.684e-1927.52Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_BARHE1.684e-1932.99Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_SODGM1.684e-1930.50Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURPS1.684e-1930.05Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURP11.684e-1930.05Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURMA1.684e-1930.05Lipid A export ATP-binding/permease protein msbA O... [more]
AB16B_ARATH1.684e-1926.01ABC transporter B family member 16 OS=Arabidopsis ... [more]
TAP2_HUMAN2.199e-1927.27Antigen peptide transporter 2 OS=Homo sapiens GN=T... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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