FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_RALME (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=msbA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20 Identity = 61/226 (26.99%), Postives = 110/226 (48.67%), Query Frame = 1 Query: 31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 + G + ++ RY L +S + +VG +GSGK+TL+ + R +P R +++ + QD V+F TV +NV P E+ ++ AL L D V+ L++ + +NG S GQRQ + + R + K IL+LDEAT+++D+ ++ +Q +L T + IAHR++++ ++D +++L G + E S Sbjct: 346 ARGDLVFDNVGFRYGDAARAALNHVSLRAAPGEVVALVGPSGSGKTTLVNLVPRFFDPTEGHILLDGQPIDRFALADLRRQIAFVSQDVVLFNDTVAANVAYGVHPREKIDMARVERALAAAYLTDVVKGLPEGLETNIGDNGMKLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERQVQAALESLMVGRTTLVIAHRLSTIENADRIVVLEQGRVAEQGS 571
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB27B_ARATH (ABC transporter B family member 27 OS=Arabidopsis thaliana GN=ABCB27 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20 Identity = 63/223 (28.25%), Postives = 109/223 (48.88%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++L D+ Y P P +L+GIS K +VG +G GK+T+ + R +P ++SI+ Q+P++F +V N+ D +TD I A + + K ++ V E G S GQ+Q + + R LL +L+LDEAT+++D ++ L+Q ++ + TV+ IAHR+++V +D V ++S G + E Sbjct: 394 GDVELNDVWFAY-PSRPSHMILKGISLRLTPGSKVALVGPSGGGKTTIANLIERFYDPLKGKILLNGVSLMEISHQYLHKQISIVSQEPILFNCSVEENIAYGFDGEASFTD--IENAAKMANAHEFIEAFPDKYNTVVGERGLRLSGGQKQRIAIARALLTNPSVLLLDEATSALDAESEYLVQDAMDSLMAGRTVLVIAHRLSTVKTADCVAVISDGEVAE 613
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHIEC (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ndvA PE=3 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19 Identity = 60/218 (27.52%), Postives = 107/218 (49.08%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G I+ RD+ + + L +S + + IVG TG+GK+TL+ L R+ +P R ++ + QD + ++ N+ E ++E + A + D + +E + D+ V E G S G+RQ + + R +LK IL+LDEAT+++D T+ ++ ++ + T IAHR+++V ++DMVL L G + E Sbjct: 333 GAIEFRDVSFGFG-NSSQGLHNVSFSVKAGQTVAIVGPTGAGKTTLVNLLQRVYDPQGGQILVDGTDITKVTRKSLRRHIATVFQDAGLLNRSISDNIRLGREGASEEDMRRAAEAAAAADFIETREDRYDTHVGERGNKLSGGERQRIAIARAILKDAPILVLDEATSALDVETEARVKAAIDNLRQNRTTFIIAHRLSTVREADMVLFLDDGRVVE 549
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_BARHE (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella henselae GN=ndvA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19 Identity = 64/194 (32.99%), Postives = 102/194 (52.58%), Query Frame = 1 Query: 124 EKKTG----IVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEE 687 E KTG IVG TG+GK+TLI L RI +P R L+ + QD +F T+ N+ T+E+++EA D + KK + ++ + E G S G++Q + + R +LK IL+LDEAT+++D T+ ++ +L + T IAHR+++V ++D+VL L G LIE+ Sbjct: 357 EVKTGQTVAIVGPTGAGKTTLINLLQRIYDPTLGHISIDGINIRSVNRESLRKSLATVFQDAGLFNRTIHDNISIGRTTATNEELYEAAKIAAAHDFILKKTDRYNTMIGEQGSQLSGGEKQRLAIARAVLKNAPILILDEATSALDVETEARVKDALDCISHNRTTFIIAHRLSTVRNADLVLFLEQGHLIEK 550
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SODGM (Lipid A export ATP-binding/permease protein msbA OS=Sodalis glossinidius (strain morsitans) GN=msbA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19 Identity = 61/200 (30.50%), Postives = 104/200 (52.00%), Query Frame = 1 Query: 94 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 L IS + P +VGR+GSGKST+ L R + R +++++ Q+ +F T+ +N+ + Y+ +QI A D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ++L + T + IAHR++++ +D +L++ G I E Sbjct: 359 LHDISLSIPTGHTVALVGRSGSGKSTIANLLTRFYDIQQGQILLDGTDLRAYKLASLRNQVALVSQNVHLFNDTIANNIAYARKATYSRKQIENAARMAYAMDFIEKMDQGLDTVIGENGVLLSGGQRQRIAIARALLRDCPILILDEATSALDTESERAIQKALDALQKNRTSLVIAHRLSTIEKADEILVVVEGRIVE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BURPS (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia pseudomallei GN=msbA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19 Identity = 58/193 (30.05%), Postives = 101/193 (52.33%), Query Frame = 1 Query: 118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 PGE + G +GSGK+TL+ L R +P++ R +++++ QD V+F T+ +NV + +++ AL L + V +D+ V +NG S GQRQ + + R + K IL+LDEAT+++D+ ++ +Q +L T + IAHR++++ +D +L+L G I E S Sbjct: 381 PGEM-VALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYSLRDLRNQIAMVSQDVVLFNDTIAANVAYGQAPERDRVEAALRAANLWETVTAMPDGIDTLVGDNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGS 572
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BURP1 (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia pseudomallei (strain 1710b) GN=msbA PE=3 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19 Identity = 58/193 (30.05%), Postives = 101/193 (52.33%), Query Frame = 1 Query: 118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 PGE + G +GSGK+TL+ L R +P++ R +++++ QD V+F T+ +NV + +++ AL L + V +D+ V +NG S GQRQ + + R + K IL+LDEAT+++D+ ++ +Q +L T + IAHR++++ +D +L+L G I E S Sbjct: 381 PGEM-VALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYSLRDLRNQIAMVSQDVVLFNDTIAANVAYGQAPERDRVEAALRAANLWETVTAMPDGIDTLVGDNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGS 572
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BURMA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia mallei GN=msbA PE=3 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19 Identity = 58/193 (30.05%), Postives = 101/193 (52.33%), Query Frame = 1 Query: 118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 PGE + G +GSGK+TL+ L R +P++ R +++++ QD V+F T+ +NV + +++ AL L + V +D+ V +NG S GQRQ + + R + K IL+LDEAT+++D+ ++ +Q +L T + IAHR++++ +D +L+L G I E S Sbjct: 381 PGEM-VALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYSLRDLRNQIAMVSQDVVLFNDTIAANVAYGQAPERDRVEAALRAANLWETVTAMPDGIDTLVGDNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGS 572
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB16B_ARATH (ABC transporter B family member 16 OS=Arabidopsis thaliana GN=ABCB16 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19 Identity = 58/223 (26.01%), Postives = 117/223 (52.47%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV-DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 G+++ +++ +Y P P + + P K +VG +GSGKST+I L R +P R+++ ++ Q+P +F +++ N+ E+ + +++ EA + + + ++V E G + S GQ+Q + + R L+K IL+LDEAT+++D ++ ++Q++L T I IAHR++++ ++D++ +L +G I E S Sbjct: 344 GEVEFNNVKCKY-PSRPETLIFDDLCLKIPSGKTVALVGGSGSGKSTVISLLQRFYDPNEGDILIDSVSINNMQVKWLRSQMGMVSQEPSLFATSIKENILFGKEDASFDEVVEAAKASNAHNFISQFPHGYQTQVGERGVHMSGGQKQRIAIARALIKSPIILLLDEATSALDLESERVVQEALDNASVGRTTIVIAHRLSTIRNADIICVLHNGCIVETGS 565 HSP 2 Score: 92.0485 bits (227), Expect = 3.176e-18 Identity = 53/190 (27.89%), Postives = 94/190 (49.47%), Query Frame = 1 Query: 127 KKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 K T IVG + SGKST+I + R +P R +S++ Q+P +F GT+R N+ + + +I EA + + D+ + G S GQ+Q + + R +LK IL+LDEAT+++D+ ++ ++Q +L T + IAHR++++ + D + +L G + E Sbjct: 1010 KSTAIVGPSRSGKSTVIGLIERFYDPLQGIVKIDGRDIRSYHLRSLRQHMSLVSQEPTLFAGTIRENIMYGRASNKIDESEIIEAGKTANAHEFITSLSDGYDTYCGDRGVQLSGGQKQRIAIARTILKNPSILLLDEATSALDSQSERVVQDALEHVMVGKTSVVIAHRLSTIQNCDTIAVLDKGKVVE 1199
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAP2_HUMAN (Antigen peptide transporter 2 OS=Homo sapiens GN=TAP2 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19 Identity = 60/220 (27.27%), Postives = 113/220 (51.36%), Query Frame = 1 Query: 37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G + +D+ Y P P VL+G++ T + T +VG GSGKST+ L + +P +++ + Q+PV+F G+VR+N+ L+ D+++ A D +++ E + + V E G + GQ+Q + + R L++ ++L+LDEAT+++D + +Q + D TV+ IAHR+ +V + +L+L G +++ Sbjct: 466 GVVKFQDVSFAYPNRPDRP-VLKGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDEKPISQYEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGIYTDVGEKGSQLAAGQKQRLAIARALVRDPRVLILDEATSALDVQCEQALQDWNSR--GDRTVLVIAHRLQTVQRAHQILVLQEGKLQK 682 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |