FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSEAE (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas aeruginosa GN=msbA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19 Identity = 65/222 (29.28%), Postives = 109/222 (49.10%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 G++++R+L RY VL IS + +VGR+GSGKSTL + R + R ++++ Q +F +V +N+ L E+I A + + D++V ENG S GQRQ + + R LLK +L+LDEAT+++DT ++ IQ +L + T + IAHR++++ +D++L++ G I E S Sbjct: 354 GRLEVRNLSFRYPGTDKQVLDDISFIAEPGQMIALVGRSGSGKSTLANLVPRFYQHNDGKILLDGVEVEDYRLRNLRRHIALVTQQVTLFNDSVANNIAYGDLAGAPREEIERAAKAANAKEFIDNLPQGFDTEVGENGVLLSGGQRQRLAIARALLKDAPLLILDEATSALDTESERHIQAALDEVMKGRTTLVIAHRLSTIEKADLILVMDQGQIVERGS 575
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB4_DICDI (ABC transporter B family member 4 OS=Dictyostelium discoideum GN=abcB4 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19 Identity = 63/223 (28.25%), Postives = 115/223 (51.57%), Query Frame = 1 Query: 37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690 G+I ++ +Y PH+ VL G++ T + + G +G GKST+ L R + + R+R+ I+ Q+P +F T+ N+ +P T+++I EA + ++ V E G S GQ+Q + + R +LK +I++LDEAT+++D+ ++ L+Q +L T + IAHR+++V ++D++ +LSHG I E+ Sbjct: 522 GEIKFINVDFKYPTRPHV-HVLNGLNLTLKPGQVVALAGSSGGGKSTIAGLLERFYDISNGDITIDGYSIKQLNAKWLRSRIGIVSQEPSLFATTILENLRYGNP--NATEDEIIEAAKLANAHQFISNFPKGYETIVGERGVQLSGGQKQRIAIARAILKNPQIIILDEATSALDSQSELLVQTALDNLMKGRTTLVIAHRLSTVQNADLIGVLSHGKIAEF 741
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAGD_DICDI (Serine protease/ABC transporter B family protein tagD OS=Dictyostelium discoideum GN=tagD PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19 Identity = 62/221 (28.05%), Postives = 111/221 (50.23%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI--VEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+I+ +++ Y VL I F K G+VG +GSGKSTL++ + R + P+ R+ ++ + Q P +F+ T+ N+ L+ T E I EA + ++ + D+ +T+ G N S GQ++ + + R + +RKI++LDE TA +D ++ I +S++ TV+ +AH++ +V D D + +L G I E Sbjct: 1574 GEIEFKNVSFCYPSRADVGVLYNIDLKFESGKCYGLVGPSGSGKSTLLELISRFYSLHPSGGKIYMDGIDIAKIRPSNLRSFVTNVHQHPFLFDATISENIGYALDNPTQEDIIEAAKLANAHEFIQSLPKQYDTMLTDGG-NLSGGQKKRIAVARAICAKRKIMLLDEITAELDPESEEAINKSIKVLTRGHTVVMVAHKVAAVRDCDKIFVLDKGQIVE 1793
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BURTA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=msbA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19 Identity = 58/193 (30.05%), Postives = 100/193 (51.81%), Query Frame = 1 Query: 118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 PGE + G +GSGK+TL+ L R +P++ R +++++ QD V+F T+ +NV + + + AL L + V +D+ V +NG S GQRQ + + R + K IL+LDEAT+++D+ ++ +Q +L T + IAHR++++ +D +L+L G I E S Sbjct: 381 PGEM-VALAGPSGSGKTTLVNLLPRFFDPSSGTVRVDGVALPEYSLHDLRNQIAMVSQDVVLFNDTIAANVAYGQTPERDGVEAALRAANLWETVTAMPDGIDTLVGDNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGS 572
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDLA_ECOLI (Multidrug resistance-like ATP-binding protein mdlA OS=Escherichia coli (strain K12) GN=mdlA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19 Identity = 61/218 (27.98%), Postives = 108/218 (49.54%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G++D+ Q Y L ++ + GI G TGSGKSTL+ + R + + R+RL+++ Q P +F TV +N+ T ++I + D++ + D++V E G S GQ+Q + + R LL +IL+LD+A ++VD T++ I +LRQ TVI AHR++++ ++ ++++ HG I + Sbjct: 333 GELDVNIHQFTYPQTDHPALENVNFALKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGCPNATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLVNAEILILDDALSAVDGRTEHQILHNLRQWGQGRTVIISAHRLSALTEASEIIVMQHGHIAQ 550
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CYDC_BACSU (ATP-binding/permease protein cydC OS=Bacillus subtilis GN=cydC PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19 Identity = 62/196 (31.63%), Postives = 92/196 (46.94%), Query Frame = 1 Query: 103 ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTD-EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 I +F G+KK GI+G +G+GKSTLI L +EP + L IPQ P +F+ T+ +N+ E A L + V L+ ++ E G S GQ Q V L R L R IL+LDE TA +D T+ I++++ F D V HR+ ++D D +++L G + E Sbjct: 346 IHLSFKGKKKIGIIGASGAGKSTLIDILGGFLEPDGGMIEVNGTSRSHLQDGSWQKNLLYIPQHPYIFDDTLGNNIRFYHPSASAEDTTRAAASAGLTELVNNLPDGLEGRIGEGGRALSGGQAQRVALARAFLGNRPILLLDEPTAHLDIETEYEIKETMLDLFEDKLVFLATHRLHWMLDMDEIIVLDGGRVAE 541
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB8_DANRE (ATP-binding cassette sub-family B member 8, mitochondrial OS=Danio rerio GN=abcb8 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19 Identity = 63/221 (28.51%), Postives = 113/221 (51.13%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPF--VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTR-LSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G++D ++ Y P P +L+ S T P K IVG +G GKST+ L R +P++ R + I Q+PV+F +V N+ TD ++ A + + + ++ V E G S GQ+Q + + R L+K IL+LDEAT+++D ++ ++Q++L + + TV+ IAHR++++ +D++ ++S+G I E Sbjct: 468 GRVDFMNISFSY-PTRPGNQILKHFSLTLPPCKTVAIVGESGGGKSTVAALLERFYDPSSGVVMLDGLDIRTLDPSWLRGHVIGFISQEPVLFGTSVMENIRFGKPSATDAEVVSAAKQANAHNFITGFADGYNTVVGERGVTLSGGQKQRIAIARALVKNPSILILDEATSALDAESERVVQEALDRATTGRTVLIIAHRLSTIQAADLICVMSNGRIVE 687
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHIL3 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ndvA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19 Identity = 60/221 (27.15%), Postives = 108/221 (48.87%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 G I+ RD+ + + L +S + + IVG TG+GK+TL+ L R+ + R ++ + QD + ++ N+ E ++E++ A + D + +E + D+ V E G S G+RQ + + R +LK IL+LDEAT+++D T+ ++ ++ + T IAHR+++V ++DMVL L G + E S Sbjct: 333 GAIEFRDVSFGFG-NSSQGLHNVSFSVKAGQTVAIVGPTGAGKTTLVNLLQRVYDAQGGKILVDGTDITKVTRKSLRRHIATVFQDAGLLNRSISDNIRLGREGASEEEMRRAAEAAAAADFIETREDRYDTHVGERGNKLSGGERQRIAIARAILKDAPILVLDEATSALDVETEARVKAAIDNLRQNRTTFIIAHRLSTVREADMVLFLDDGRVVEQGS 552
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_WIGBR (Lipid A export ATP-binding/permease protein msbA OS=Wigglesworthia glossinidia brevipalpis GN=msbA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19 Identity = 61/222 (27.48%), Postives = 114/222 (51.35%), Query Frame = 1 Query: 31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690 + G+I +++ Y L+ I+ ++G +G+GKST++ L R E R +++++ Q+ +F T+ +N+ ++ Y+ QI +A D + K + L++ + ENG S GQRQ + + R LL+ IL+LDEAT+++D ++ +Q+++ + + T + IAHRI+++ SDM+LL+ G I EY Sbjct: 337 ARGEIKFKNITFTYPGKENPSLKDINIKISAGCTVALIGSSGAGKSTIVNLLTRFYEADKGSIFLDNINLKKYKLSNLRNQIALVSQNIYLFNDTIANNIAYAKKKIYSKYQIEKAAYMAYAMDFIIKMKHGLNTIIGENGTLLSGGQRQRIAIARALLRDCPILILDEATSALDIESEIKVQKAIDKIRKNRTSLVIAHRISTIKKSDMILLVEKGKIIEY 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA2_COLP3 (Lipid A export ATP-binding/permease protein msbA 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=msbA2 PE=3 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19 Identity = 59/201 (29.35%), Postives = 104/201 (51.74%), Query Frame = 1 Query: 94 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEE 687 L S G VG +GSGKSTL + L R+ + R + + + QD V+ + T+ +N+ + TD +I +A + ++ L+S++ ENG N S GQRQ + + R +L+ I++LDEAT+++D ++ IQQ+L + TV+ IAH+++S+ D +++++ G LIE+ Sbjct: 364 LSNFSLQIKGGTSVAFVGESGSGKSTLARLLLRLYQSPKQSILINDIAIEDYSLSSLRAQFAFVSQDIVLIDDTLANNISFGCNRDVTDSEIEQAAINANVMAFAKELPLGLNSEIGENGRNLSGGQRQRIAIARAMLRDASIIVLDEATSALDNHSEKHIQQALTRLTQHKTVLIIAHKLSSIQHVDEIIVINKGRLIEQ 564 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |