FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSEAE (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas aeruginosa GN=msbA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 65/222 (29.28%), Postives = 109/222 (49.10%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G++++R+L  RY      VL  IS      +   +VGR+GSGKSTL   + R  +                     R  ++++ Q   +F  +V +N+    L     E+I  A       + +       D++V ENG   S GQRQ + + R LLK   +L+LDEAT+++DT ++  IQ +L +     T + IAHR++++  +D++L++  G I E  S
Sbjct:  354 GRLEVRNLSFRYPGTDKQVLDDISFIAEPGQMIALVGRSGSGKSTLANLVPRFYQHNDGKILLDGVEVEDYRLRNLRRHIALVTQQVTLFNDSVANNIAYGDLAGAPREEIERAAKAANAKEFIDNLPQGFDTEVGENGVLLSGGQRQRLAIARALLKDAPLLILDEATSALDTESERHIQAALDEVMKGRTTLVIAHRLSTIEKADLILVMDQGQIVERGS 575          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB4_DICDI (ABC transporter B family member 4 OS=Dictyostelium discoideum GN=abcB4 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 63/223 (28.25%), Postives = 115/223 (51.57%), Query Frame = 1
Query:   37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690
            G+I   ++  +Y   PH+  VL G++ T    +   + G +G GKST+   L R  + +                   R+R+ I+ Q+P +F  T+  N+   +P    T+++I EA         +       ++ V E G   S GQ+Q + + R +LK  +I++LDEAT+++D+ ++ L+Q +L       T + IAHR+++V ++D++ +LSHG I E+
Sbjct:  522 GEIKFINVDFKYPTRPHV-HVLNGLNLTLKPGQVVALAGSSGGGKSTIAGLLERFYDISNGDITIDGYSIKQLNAKWLRSRIGIVSQEPSLFATTILENLRYGNP--NATEDEIIEAAKLANAHQFISNFPKGYETIVGERGVQLSGGQKQRIAIARAILKNPQIIILDEATSALDSQSELLVQTALDNLMKGRTTLVIAHRLSTVQNADLIGVLSHGKIAEF 741          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAGD_DICDI (Serine protease/ABC transporter B family protein tagD OS=Dictyostelium discoideum GN=tagD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 62/221 (28.05%), Postives = 111/221 (50.23%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRI--VEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I+ +++   Y       VL  I   F   K  G+VG +GSGKSTL++ + R   + P+                   R+ ++ + Q P +F+ T+  N+   L+  T E I EA       + ++    + D+ +T+ G N S GQ++ + + R +  +RKI++LDE TA +D  ++  I +S++      TV+ +AH++ +V D D + +L  G I E
Sbjct: 1574 GEIEFKNVSFCYPSRADVGVLYNIDLKFESGKCYGLVGPSGSGKSTLLELISRFYSLHPSGGKIYMDGIDIAKIRPSNLRSFVTNVHQHPFLFDATISENIGYALDNPTQEDIIEAAKLANAHEFIQSLPKQYDTMLTDGG-NLSGGQKKRIAVARAICAKRKIMLLDEITAELDPESEEAINKSIKVLTRGHTVVMVAHKVAAVRDCDKIFVLDKGQIVE 1793          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BURTA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=msbA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 58/193 (30.05%), Postives = 100/193 (51.81%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            PGE    + G +GSGK+TL+  L R  +P++                  R +++++ QD V+F  T+ +NV   +    + +  AL    L + V      +D+ V +NG   S GQRQ + + R + K   IL+LDEAT+++D+ ++  +Q +L       T + IAHR++++  +D +L+L  G I E  S
Sbjct:  381 PGEM-VALAGPSGSGKTTLVNLLPRFFDPSSGTVRVDGVALPEYSLHDLRNQIAMVSQDVVLFNDTIAANVAYGQTPERDGVEAALRAANLWETVTAMPDGIDTLVGDNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGS 572          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDLA_ECOLI (Multidrug resistance-like ATP-binding protein mdlA OS=Escherichia coli (strain K12) GN=mdlA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 61/218 (27.98%), Postives = 108/218 (49.54%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G++D+   Q  Y       L  ++      +  GI G TGSGKSTL+  + R  + +                   R+RL+++ Q P +F  TV +N+       T ++I        + D++ +     D++V E G   S GQ+Q + + R LL   +IL+LD+A ++VD  T++ I  +LRQ     TVI  AHR++++ ++  ++++ HG I +
Sbjct:  333 GELDVNIHQFTYPQTDHPALENVNFALKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGCPNATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLVNAEILILDDALSAVDGRTEHQILHNLRQWGQGRTVIISAHRLSALTEASEIIVMQHGHIAQ 550          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CYDC_BACSU (ATP-binding/permease protein cydC OS=Bacillus subtilis GN=cydC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 62/196 (31.63%), Postives = 92/196 (46.94%), Query Frame = 1
Query:  103 ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTD-EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            I  +F G+KK GI+G +G+GKSTLI  L   +EP                    +  L  IPQ P +F+ T+ +N+         E    A     L + V      L+ ++ E G   S GQ Q V L R  L  R IL+LDE TA +D  T+  I++++   F D  V    HR+  ++D D +++L  G + E
Sbjct:  346 IHLSFKGKKKIGIIGASGAGKSTLIDILGGFLEPDGGMIEVNGTSRSHLQDGSWQKNLLYIPQHPYIFDDTLGNNIRFYHPSASAEDTTRAAASAGLTELVNNLPDGLEGRIGEGGRALSGGQAQRVALARAFLGNRPILLLDEPTAHLDIETEYEIKETMLDLFEDKLVFLATHRLHWMLDMDEIIVLDGGRVAE 541          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB8_DANRE (ATP-binding cassette sub-family B member 8, mitochondrial OS=Danio rerio GN=abcb8 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 63/221 (28.51%), Postives = 113/221 (51.13%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPF--VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTR-LSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G++D  ++   Y P  P   +L+  S T P  K   IVG +G GKST+   L R  +P++                  R   +  I Q+PV+F  +V  N+       TD ++  A  +    + +       ++ V E G   S GQ+Q + + R L+K   IL+LDEAT+++D  ++ ++Q++L +  +  TV+ IAHR++++  +D++ ++S+G I E
Sbjct:  468 GRVDFMNISFSY-PTRPGNQILKHFSLTLPPCKTVAIVGESGGGKSTVAALLERFYDPSSGVVMLDGLDIRTLDPSWLRGHVIGFISQEPVLFGTSVMENIRFGKPSATDAEVVSAAKQANAHNFITGFADGYNTVVGERGVTLSGGQKQRIAIARALVKNPSILILDEATSALDAESERVVQEALDRATTGRTVLIIAHRLSTIQAADLICVMSNGRIVE 687          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHIL3 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ndvA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 60/221 (27.15%), Postives = 108/221 (48.87%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G I+ RD+   +  +    L  +S +    +   IVG TG+GK+TL+  L R+ +                     R  ++ + QD  +   ++  N+    E  ++E++  A +     D +  +E + D+ V E G   S G+RQ + + R +LK   IL+LDEAT+++D  T+  ++ ++     + T   IAHR+++V ++DMVL L  G + E  S
Sbjct:  333 GAIEFRDVSFGFG-NSSQGLHNVSFSVKAGQTVAIVGPTGAGKTTLVNLLQRVYDAQGGKILVDGTDITKVTRKSLRRHIATVFQDAGLLNRSISDNIRLGREGASEEEMRRAAEAAAAADFIETREDRYDTHVGERGNKLSGGERQRIAIARAILKDAPILVLDEATSALDVETEARVKAAIDNLRQNRTTFIIAHRLSTVREADMVLFLDDGRVVEQGS 552          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_WIGBR (Lipid A export ATP-binding/permease protein msbA OS=Wigglesworthia glossinidia brevipalpis GN=msbA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 61/222 (27.48%), Postives = 114/222 (51.35%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690
            + G+I  +++   Y       L+ I+          ++G +G+GKST++  L R  E                     R +++++ Q+  +F  T+ +N+   ++  Y+  QI +A       D + K +  L++ + ENG   S GQRQ + + R LL+   IL+LDEAT+++D  ++  +Q+++ +   + T + IAHRI+++  SDM+LL+  G I EY
Sbjct:  337 ARGEIKFKNITFTYPGKENPSLKDINIKISAGCTVALIGSSGAGKSTIVNLLTRFYEADKGSIFLDNINLKKYKLSNLRNQIALVSQNIYLFNDTIANNIAYAKKKIYSKYQIEKAAYMAYAMDFIIKMKHGLNTIIGENGTLLSGGQRQRIAIARALLRDCPILILDEATSALDIESEIKVQKAIDKIRKNRTSLVIAHRISTIKKSDMILLVEKGKIIEY 558          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA2_COLP3 (Lipid A export ATP-binding/permease protein msbA 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=msbA2 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 59/201 (29.35%), Postives = 104/201 (51.74%), Query Frame = 1
Query:   94 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEE 687
            L   S    G      VG +GSGKSTL + L R+ +                     R + + + QD V+ + T+ +N+      + TD +I +A     +    ++    L+S++ ENG N S GQRQ + + R +L+   I++LDEAT+++D  ++  IQQ+L +     TV+ IAH+++S+   D +++++ G LIE+
Sbjct:  364 LSNFSLQIKGGTSVAFVGESGSGKSTLARLLLRLYQSPKQSILINDIAIEDYSLSSLRAQFAFVSQDIVLIDDTLANNISFGCNRDVTDSEIEQAAINANVMAFAKELPLGLNSEIGENGRNLSGGQRQRIAIARAMLRDASIIVLDEATSALDNHSEKHIQQALTRLTQHKTVLIIAHKLSSIQHVDEIIVINKGRLIEQ 564          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MSBA_PSEAE2.199e-1929.28Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB4_DICDI2.199e-1928.25ABC transporter B family member 4 OS=Dictyostelium... [more]
TAGD_DICDI2.872e-1928.05Serine protease/ABC transporter B family protein t... [more]
MSBA_BURTA3.751e-1930.05Lipid A export ATP-binding/permease protein msbA O... [more]
MDLA_ECOLI3.751e-1927.98Multidrug resistance-like ATP-binding protein mdlA... [more]
CYDC_BACSU3.751e-1931.63ATP-binding/permease protein cydC OS=Bacillus subt... [more]
ABCB8_DANRE3.751e-1928.51ATP-binding cassette sub-family B member 8, mitoch... [more]
NDVA_RHIL34.899e-1927.15Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_WIGBR4.899e-1927.48Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA2_COLP34.899e-1929.35Lipid A export ATP-binding/permease protein msbA 2... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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