FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDL2_YEAST (ATP-dependent permease MDL2, mitochondrial OS=Saccharomyces cerevisiae GN=MDL2 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 62/221 (28.05%), Postives = 105/221 (47.51%), Query Frame = 1
Query:   28 PSHGKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTD--EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSH 672
            P  G I+ +D+   Y P  P V   + ++          IVG +G GKST+   L R   P                    R  + I+ Q+PV+  GT+R N+     YT   E+I     +C   + + K     D+ +  +G   S GQ+Q + + R L+K+  IL+LDEAT+++D  ++  I  +  Q       T+++IAHR++++  S+ V++L H
Sbjct:  441 PDRGVIEFKDVSFSY-PTRPSVQIFKNLNFKIAPGSSVCIVGPSGRGKSTIALLLLRYYNPTTGTITIDNQDISKLNCKSLRRHIGIVQQEPVLMSGTIRDNITYGLTYTPTKEEIRSVAKQCFCHNFITKFPNTYDTVIGPHGTLLSGGQKQRIAIARALIKKPTILILDEATSALDVESEGAINYTFGQLMKSKSMTIVSIAHRLSTIRRSENVIVLGH 660          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LCNC_LACLA (Lactococcin-A transport/processing ATP-binding protein lcnC OS=Lactococcus lactis subsp. lactis GN=lcnC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 62/224 (27.68%), Postives = 115/224 (51.34%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            SH  +++ D+  +Y      VL  I  +    +K  IVG +GSGKSTL++ L    +P +                  R  ++ +PQ P +F G++  N+     E  + E+I +A++  ++  ++ + +    ++++ +  + S GQ+Q + L R LL   KIL+LDEAT+++D  T+  I ++L     D T+I IAHR++    S  ++++  G + E  S
Sbjct:  478 SHFNLNMSDISYQYGFGRK-VLSEIELSIKENEKLTIVGMSGSGKSTLVKLLVNFFQPTSGTITLGGIDLQQFDKHQLRRLINYLPQQPYIFTGSILDNLLLGANENASQEEILKAVELAEIRADIEQMQLGYQTELSSDASSLSGGQKQRIALARALLSPAKILILDEATSNLDMITEKKILKNLLP--LDKTIIFIAHRLSVAEMSHRIIVVDQGKVIESGS 698          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: COMA_STRPN (Transport/processing ATP-binding protein comA OS=Streptococcus pneumoniae GN=comA PE=3 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 62/201 (30.85%), Postives = 100/201 (49.75%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            VL  I+ T P   K   VG +GSGK+TL + +    +P+                   R  ++ + Q P +F GT+  N+     E  T E I  A++  ++ +++ +      +++T +G   S GQRQ + L R LL    +L+LDEAT+S+D  T+  I  +L     D T+I IAHR+T    ++ V++L  G I E
Sbjct:  499 VLSDINLTVPQGSKVAFVGISGSGKTTLAKMMVNFYDPSQGEISLGSVNLNQIDKKALRQYINYLSQQPYVFNGTILENLLLGAKEGTTQEDILRAVELAEIREDIERMPLNYQTELTSDGAGISGGQRQRIALARALLTDAPVLILDEATSSLDILTEKRIVDNLIA--LDKTLIFIAHRLTIAERTEKVVVLDQGKIVE 697          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB8_RAT (ATP-binding cassette sub-family B member 8, mitochondrial OS=Rattus norvegicus GN=Abcb8 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 59/220 (26.82%), Postives = 114/220 (51.82%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTR-LSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I  +++   Y     F VL+  +   P  K   +VG++G GK+T+   L R  +P A                  R + +  I Q+PV+F  T+  N+   + + +DE+++ A  K    + +        + V E G   S GQ+Q + + R L+KR  +L+LDEAT+++D  ++ ++Q++L +  +  TV+ IAHR+++V  +  ++++++G + E
Sbjct:  452 GSITFQNVSFSYPCRPGFNVLKNFTLKLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVTLDGHDLRTLDPSWLRGQVIGFISQEPVLFATTIMENIRFGKLDASDEEVYTAARKANAHEFISSFPDGYSTVVGERGTTLSGGQKQRLAIARALIKRPTVLILDEATSALDAESERIVQEALDRASAGRTVLVIAHRLSTVRAAHSIIVMANGQVCE 671          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHOPB (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain BisB18) GN=ndvA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 63/231 (27.27%), Postives = 110/231 (47.62%), Query Frame = 1
Query:    4 KSRPNHSWPSH--GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            + RP+   P    G ++ +D+   Y    P V        PGE    +VG TG+GKST I  L R  +P +                  R  + ++ Q+ ++F  ++  N+   + + T+E++  A  + Q  D + + E K D+   E G   S G+RQ + + R LLK   IL+LDEAT+++D  T+  +  +L +     T   IAHR++++  +  +L+   G + E
Sbjct:  330 RDRPDAVDPERLQGLVEFKDVSFSYDGKRPAVADLSFTARPGET-IALVGATGAGKSTAIALLHRAFDPQSGVIRIDGLDVRDLTLAGLRRNIGVVFQEALLFNRSIADNLRVGKPDATEEEMRTAASRAQALDFIERSEQKFDTNAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNLALDEVMKGRTTFVIAHRLSTIRHATRILVFEAGRVIE 559          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHIRD (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium radiobacter GN=ndvA PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 63/218 (28.90%), Postives = 107/218 (49.08%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ R++   +A     V   +S T    +   IVG TG+GK+TLI  L R+ +P +                  R  ++ + QD  +   ++R N+    E  TD ++ EA       D +  +     ++V E G   S G+RQ + + R +LK   IL+LDEAT+++D  T+  ++ ++     + T   IAHR+++V D+D+VL L  G I E
Sbjct:  333 GTVEFRNINFGFANTKQGV-HDVSFTAKAGETVAIVGPTGAGKTTLINLLQRVYDPDSGQILIDGTDISTVTKNSLRNSIATVFQDAGLLNRSIRENIRLGRETATDAEVVEAAAAAAATDFIDSRINGYLTQVGERGNRLSGGERQRIAIARAILKNAPILVLDEATSALDVETEARVKAAVDALRKNRTTFIIAHRLSTVRDADLVLFLDQGRIIE 549          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_AGRT5 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ndvA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 63/218 (28.90%), Postives = 107/218 (49.08%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ R++   +A     V   +S T    +   IVG TG+GK+TLI  L R+ +P +                  R  ++ + QD  +   ++R N+    E  TD ++ EA       D +  +     ++V E G   S G+RQ + + R +LK   IL+LDEAT+++D  T+  ++ ++     + T   IAHR+++V D+D+VL L  G I E
Sbjct:  333 GTVEFRNINFGFANTKQGV-HDVSFTAKAGETVAIVGPTGAGKTTLINLLQRVYDPDSGQILIDGTDISTVTKNSLRNSIATVFQDAGLLNRSIRENIRLGRETATDAEVVEAAAAAAATDFIDSRINGYLTQVGERGNRLSGGERQRIAIARAILKNAPILVLDEATSALDVETEARVKAAVDALRKNRTTFIIAHRLSTVRDADLVLFLDQGRIIE 549          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BLOPB (Lipid A export ATP-binding/permease protein msbA OS=Blochmannia pennsylvanicus (strain BPEN) GN=msbA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 63/219 (28.77%), Postives = 111/219 (50.68%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE--YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I   D+   Y       L  I+ +    K   +VGR+GSGKST++  L R  +                     R +++++ Q+  +F  T+ +N+       Y+ E I  A       D + + +  LD+ + ENG   S GQRQ + + R LL+   IL+ DEAT+++D+A++++I +SL     + T + IAHR+++V ++D +L++ +G I E
Sbjct:  342 GHIIFDDVTFFYPEKNTPSLYKINFSIESGKTVALVGRSGSGKSTIVNLLTRFYDIDKGRILLDGFNLNDYKLASLRNQIAMVSQNVHLFNDTIANNIAYARRNFYSRESIETAARMACAMDFISQMKNGLDTIIGENGILLSSGQRQRIAIARALLRDCPILIFDEATSALDSASEHIIHKSLDTLKKNRTSLIIAHRLSTVENADEILVIENGYIME 560          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: YGAD_BACSU (Putative multidrug export ATP-binding/permease protein ygaD OS=Bacillus subtilis GN=ygaD PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 54/218 (24.77%), Postives = 109/218 (50.00%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ +++  +Y      +L  +S      +   +VG +G GKSTL+  + R  +  +                  R ++ ++ QD  +F  T+R N+     + T E+I EA       + +       +++V E G   S GQ+Q + + RV LK   +L+LDEAT+++D  +++ IQ+++ +   D T   +AHR++++  +D ++++ +G I E
Sbjct:  339 GGVEFQNVSFQYEKDKENILHDVSLKVNRGETVALVGMSGGGKSTLVSLIPRFYDVTSGRLLIDGTDIRDYEARSLRNQVGMVLQDTFLFSETIRENIAIGKPDATLEEIIEAAKAANAHEFIMSFPEGYETRVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSALDLESEHYIQEAMDKLAKDRTTFVVAHRLSTITHADKIVVMENGTIIE 556          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHIME (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium meliloti GN=ndvA PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 59/218 (27.06%), Postives = 107/218 (49.08%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+++ RD+   +A     V R +S      +   IVG TG+GK+TL+  L R+ EP                    R  ++ + QD  +   ++  N+    E+ + +++  A +     D +  +    D+ V E G   S G+RQ V + R +LK   IL+LDEAT+++D  T+  ++ ++     D T   IAHR+++V ++D+V+ +  G + E
Sbjct:  333 GEVEFRDISFDFANSAQGV-RNVSFKAKAGQTIAIVGPTGAGKTTLVNLLQRVHEPKHGQILIDGVDIATVTRKSLRRSIATVFQDAGLMNRSIGENIRLGREDASLDEVMAAAEAAAASDFIEDRLNGYDTVVGERGNRLSGGERQRVAIARAILKNAPILVLDEATSALDVETEARVKDAIDALRKDRTTFIIAHRLSTVREADLVIFMDQGRVVE 549          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MDL2_YEAST4.899e-1928.05ATP-dependent permease MDL2, mitochondrial OS=Sacc... [more]
LCNC_LACLA4.899e-1927.68Lactococcin-A transport/processing ATP-binding pro... [more]
COMA_STRPN4.899e-1930.85Transport/processing ATP-binding protein comA OS=S... [more]
ABCB8_RAT6.398e-1926.82ATP-binding cassette sub-family B member 8, mitoch... [more]
NDVA_RHOPB8.357e-1927.27Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_RHIRD8.357e-1928.90Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_AGRT58.357e-1928.90Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_BLOPB8.357e-1928.77Lipid A export ATP-binding/permease protein msbA O... [more]
YGAD_BACSU1.091e-1824.77Putative multidrug export ATP-binding/permease pro... [more]
NDVA_RHIME1.091e-1827.06Beta-(1-->2)glucan export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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