FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1348_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1348/MT1390 OS=Mycobacterium tuberculosis GN=Rv1348 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 63/207 (30.43%), Postives = 102/207 (49.28%), Query Frame = 1
Query:   70 YAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            Y P +P V++ +S T      T +VG +GSGKSTL   L R  +                      TR+  + Q+  +  GT   N+   + +   EQ+  A  + Q+ D V +     D+ +  N    S G+RQ + + R +L    +L+LDEATA  D  ++ L+QQ+L +   D TV+ IAHR+ ++  +D +++L HG I E
Sbjct:  619 YRPGVP-VIQDVSLTLRPGTVTALVGPSGSGKSTLATLLARFHDVERGAIRVGGQDIRSLAADELYTRVGFVLQEAQLVHGTAAENIALAVPDAPAEQVQVAAREAQIHDRVLRLPDGYDTVLGANS-GLSGGERQRLTIARAILGDTPVLILDEATAFADPESEYLVQQALNRLTRDRTVLVIAHRLHTITRADQIVVLDHGRIVE 823          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ACIAD (Lipid A export ATP-binding/permease protein msbA OS=Acinetobacter sp. (strain ADP1) GN=msbA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 57/192 (29.69%), Postives = 99/192 (51.56%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            PGE    IVGR+G+GK++L+  L R  E  +                  R +++++ Q  V+F  +VR N+    LE   +  I  A       D +       D+ +   G N S GQRQ + + R +LK   IL+LDEAT+++D  +++ IQ++  +   + T I IAHR++++ ++D ++++  G I E
Sbjct:  360 PGET-VAIVGRSGAGKTSLVNLLVRFQEVTSGSLYLDHIPIQDIELSCLRQQVAMVNQQVVLFNRSVRENIAYGQLEGAAEADIVAAAKAAYAHDFIMNLPQGYDTILGAQGLNLSGGQRQRIAIARAILKNAPILILDEATSALDNESEHFIQKAFDEAMQNRTTIVIAHRLSTIENADRIVVMDKGQIIE 550          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: LAGD_LACLA (Lactococcin-G-processing and transport ATP-binding protein lagD OS=Lactococcus lactis subsp. lactis GN=lagD PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 62/215 (28.84%), Postives = 106/215 (49.30%), Query Frame = 1
Query:   43 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTD-EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            I L  +   Y   +P VLR +S     + K  +VG +GSGKSTL + L +  +P+                   R  ++ +PQ+   F GT+  N+   L    + E+I+ A     L D + ++  + DS + E G N S GQ+Q + + R +L   +I++ DEAT+ +DT  +  I + L +   D T+I IAH ++     D +++L  G++
Sbjct:  469 IKLDKVSFSYNMKLP-VLRDVSLEIYSKSKVALVGVSGSGKSTLAKLLVKFYDPSEGNITYGDINCQDIENHKLRNHVTYVPQESFFFNGTIIDNLTFGLSHQPEFEKIFRACKAACLVDFINQQPLRFDSVLEEGGNNLSGGQKQRLAIARAILNDSEIIIFDEATSGLDTLLEKEILEYLIK-LQDKTIIFIAHHLSIAKACDEIIVLDQGIL 681          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB9_RAT (ATP-binding cassette sub-family B member 9 OS=Rattus norvegicus GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 60/223 (26.91%), Postives = 109/223 (48.88%), Query Frame = 1
Query:   28 PSH--GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            P H  G++D  ++   Y   PH   VL+ +S +    K T +VG +GSGKS+ +  L                             +S++ Q+PV+F  ++  N+   L     E + EA  K      + + +    ++  E G   S GQ+Q V + R L++   +L+LDEAT+++D  ++ LIQQ++  +    TV+ IAHR+++V  + ++++L  G +
Sbjct:  493 PDHLEGRVDFENVTFTYRTRPHTQ-VLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLQGGRVLLDGEPIGAYDHKYLHRVISLVSQEPVLFARSITDNISYGLPTVPFEMVVEAAQKANAHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQRHTVLIIAHRLSTVERAHLIVVLDKGRV 714          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB9_MOUSE (ATP-binding cassette sub-family B member 9 OS=Mus musculus GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 60/223 (26.91%), Postives = 109/223 (48.88%), Query Frame = 1
Query:   28 PSH--GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            P H  G++D  ++   Y   PH   VL+ +S +    K T +VG +GSGKS+ +  L                             +S++ Q+PV+F  ++  N+   L     E + EA  K      + + +    ++  E G   S GQ+Q V + R L++   +L+LDEAT+++D  ++ LIQQ++  +    TV+ IAHR+++V  + ++++L  G +
Sbjct:  493 PDHLEGRVDFENVTFTYRTRPHTQ-VLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLQGGRVLLDGKPIGAYDHKYLHRVISLVSQEPVLFARSITDNISYGLPTVPFEMVVEAAQKANAHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQRHTVLIIAHRLSTVERAHLIVVLDKGRV 714          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB8_HUMAN (ATP-binding cassette sub-family B member 8, mitochondrial OS=Homo sapiens GN=ABCB8 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 55/201 (27.36%), Postives = 108/201 (53.73%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRL-SIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            VL+  + T P  K   +VG++G GK+T+   L R  +P A                  R ++   I Q+PV+F  T+  N+   + E +DE+++ A  +    + +       ++ V E G   S GQ+Q + + R L+K+  +L+LDEAT+++D  ++ ++Q++L +  +  TV+ IAHR+++V  +  +++++ G + E
Sbjct:  489 VLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVMLDGRDLRTLDPSWLRGQVVGFISQEPVLFGTTIMENIRFGKLEASDEEVYTAAREANAHEFITSFPEGYNTVVGERGTTLSGGQKQRLAIARALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAHRLSTVRGAHCIVVMADGRVWE 689          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB6B_ARATH (ABC transporter B family member 6 OS=Arabidopsis thaliana GN=ABCB6 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 61/222 (27.48%), Postives = 109/222 (49.10%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL-RQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +G I+L+++   Y P  P   VL   S    G +   +VG +GSGKST+I  + R  +P A                  R+ + +I Q+P++F  T+R N+        E ++ EA         +       D+ +   G   + GQ+Q + + RV+LK   IL++DEA++S+++ +  ++Q++L      + T I IAHR+  +   D +++L+ G I E
Sbjct: 1155 YGSIELKNIDFCY-PTRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERYYDPVAGQVLLDGRDLKSYNLRWLRSHMGLIQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVELTQGQKQRIAIARVVLKNAPILLIDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRVAMMRHVDNIVVLNGGKIVE 1375          

HSP 2 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 55/219 (25.11%), Postives = 105/219 (47.95%), Query Frame = 1
Query:   37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I+ R++   Y   P +P +L G   T P +K   +VGR GSGKS++I  + R  +P                    R+++ ++ Q+P +   ++R N+    + T +QI EA  K      +   E   +++V + G   +  Q+  + + R +L    IL+LDE T  +D   + ++Q++L       + I IA R++ + ++D + ++  G + E
Sbjct:  410 GNIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRENIAYGRDATLDQIEEAAKKAHAHTFISSLEKGYETQVGKTGLTLTEEQKIKLSIARAVLLDPTILLLDEVTGGLDFEAERVVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLLE 627          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHOP5 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain BisA53) GN=ndvA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 59/221 (26.70%), Postives = 107/221 (48.42%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G ++  ++   Y    P +        PG+    +VG TG+GKST I  L R  +P +                  R  + ++ Q+ ++F+ T+  N+   + + T+E++  A  + Q  D + + E K D+   E G   S G+RQ + + R LLK   IL+LDEAT+++D  T+  +  +L +     T   IAHR++++  +  +L+  +G + E  S
Sbjct:  343 GLVEFDNVSFSYDGKRPAIEDLSFTALPGQT-IALVGATGAGKSTAIALLHRAFDPQSGVIKIDGMDVRGLTLAGLRRNIGVVFQEALLFDRTIADNLRVGKPDATEEEMRIAASRAQALDFIERSELKFDTNAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNLALDEVMKGRTTFVIAHRLSTIRHATRILVFDNGRVIESGS 562          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB8_PONAB (ATP-binding cassette sub-family B member 8, mitochondrial OS=Pongo abelii GN=ABCB8 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 55/201 (27.36%), Postives = 108/201 (53.73%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRL-SIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            VL+  + T P  K   +VG++G GK+T+   L R  +P A                  R ++   I Q+PV+F  T+  N+   + E +DE+++ A  +    + +       ++ V E G   S GQ+Q + + R L+K+  +L+LDEAT+++D  ++ ++Q++L +  +  TV+ IAHR+++V  +  +++++ G + E
Sbjct:  472 VLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVMLDGRDLRTLDPSWLRGQVVGFISQEPVLFGTTIMENIRFGKLEASDEEVYAAAREANAHEFITSFPEGYNTIVGERGTTLSGGQKQRLAIARALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAHRLSTVRGAHRIVVMADGRVWE 672          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHOPA (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris GN=ndvA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 56/218 (25.69%), Postives = 108/218 (49.54%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ +++   Y    P +        PG+    +VG TG+GKST I  L R  +P +                  R  + ++ Q+ ++F+ ++  N+   + + T E++  A ++ Q  + + + + K D+   E G   S G+RQ + + R LLK   IL+LDEAT+++D  T+  +  +L +     T   IAHR++++ D+  +L+  +G + E
Sbjct:  343 GLVEFQNVSFSYDGKRPAIEDLSFTALPGDT-IALVGATGAGKSTAIALLHRAFDPQSGVIKVDGMDIRGITLASLRRNIGVVFQEALLFDRSIADNLRVGKPDATPEELRLAAERAQALEFIERSDHKFDTNAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEAKLNLALDEVMKGRTTFVIAHRLSTIRDATRILVFDNGKVIE 559          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
Y1348_MYCTU4.147e-1830.43Uncharacterized ABC transporter ATP-binding protei... [more]
MSBA_ACIAD4.147e-1829.69Lipid A export ATP-binding/permease protein msbA O... [more]
LAGD_LACLA4.147e-1828.84Lactococcin-G-processing and transport ATP-binding... [more]
ABCB9_RAT4.147e-1826.91ATP-binding cassette sub-family B member 9 OS=Ratt... [more]
ABCB9_MOUSE4.147e-1826.91ATP-binding cassette sub-family B member 9 OS=Mus ... [more]
ABCB8_HUMAN4.147e-1827.36ATP-binding cassette sub-family B member 8, mitoch... [more]
AB6B_ARATH4.147e-1827.48ABC transporter B family member 6 OS=Arabidopsis t... [more]
NDVA_RHOP55.417e-1826.70Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
ABCB8_PONAB5.417e-1827.36ATP-binding cassette sub-family B member 8, mitoch... [more]
NDVA_RHOPA7.074e-1825.69Beta-(1-->2)glucan export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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