FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: YBT1_YEAST (ATP-dependent bile acid permease OS=Saccharomyces cerevisiae GN=YBT1 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.509e-52
Identity = 104/251 (41.43%), Postives = 154/251 (61.35%), Query Frame = 1
Query:    4 KSRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGK---------------------LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            K  P   WP  GKI++ DL +RYAP++P V++ +S +   + K GIVGRTG+GKST+I  LFR +EP                    R  ++IIPQDP +F GT+++N+DP +E++D QI+EAL +  L  E + ++G                      L S+++E G N S GQRQL+CL R LL+  KI++LDEATAS+D ++D  IQ+++R+ F   T++TIAHR+ SVID D +L++  G ++EYD
Sbjct: 1368 KEIPPPQWPQDGKIEVNDLSLRYAPNLPRVIKNVSFSVDAQSKIGIVGRTGAGKSTIITALFRFLEPETGHIKIDNIDISGVDLQRLRRSITIIPQDPTLFSGTIKTNLDPYDEFSDRQIFEALKRVNLISEEQLQQGATRETSNEASSTNSENVNKFLDLSSEISEGGSNLSQGQRQLMCLARSLLRSPKIILLDEATASIDYSSDAKIQETIRKEFQGSTILTIAHRLRSVIDYDKILVMDAGEVKEYD 1618          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: YH85_SCHPO (Uncharacterized ABC transporter ATP-binding protein/permease C359.05 OS=Schizosaccharomyces pombe GN=SPBC359.05 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.971e-52
Identity = 102/231 (44.16%), Postives = 143/231 (61.90%), Query Frame = 1
Query:    4 KSRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            ++RP   WP+ G +       +Y   + F L  I+      +K GIVGRTG+GKSTL   LFRI+EP                    R+RLSIIPQ+  +FEG +R N+DP    TD++IWE L+   L + + + E  L S+V E G N+S GQRQL+CL RVLL   +IL+LDEATASV   TD ++QQ++R+ F D T++T+AHRI +V+DSD +L+L HG + E+D+
Sbjct: 1213 ENRPPCEWPTDGAVSFNHYSAKYREDLSFALNNINIEISPREKIGIVGRTGAGKSTLAMALFRIIEPTEGKIEIDNEDITKFGLYDLRSRLSIIPQESQIFEGNIRENLDPNHRLTDKKIWEVLEIASLKNCISQLEDGLYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLDEATASVHAETDAIVQQTIRKRFKDRTILTVAHRINTVMDSDRILVLDHGKVVEFDA 1443          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: YCFI_YEAST (Metal resistance protein YCF1 OS=Saccharomyces cerevisiae GN=YCF1 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.971e-52
Identity = 103/230 (44.78%), Postives = 145/230 (63.04%), Query Frame = 1
Query:   10 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGK-LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            RP   WPS G I   +   RY P +  VL+ I+      +K GIVGRTG+GKS+L   LFR++E +                   R +LSIIPQD  +FEGTVR N+DP+ +YTDE IW AL+   L + V       LD+++TE G N S+GQRQL+CL R +L   KIL+LDEATA+VD  TD ++Q+++R  F D T++TIAHR+ +++DSD +++L +G + E+DS
Sbjct: 1261 RPPKEWPSQGDIKFNNYSTRYRPELDLVLKHINIHIKPNEKVGIVGRTGAGKSSLTLALFRMIEASEGNIVIDNIAINEIGLYDLRHKLSIIPQDSQVFEGTVRENIDPINQYTDEAIWRALELSHLKEHVLSMSNDGLDAQLTEGGGNLSVGQRQLLCLARAMLVPSKILVLDEATAAVDVETDKVVQETIRTAFKDRTILTIAHRLNTIMDSDRIIVLDNGKVAEFDS 1490          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MRP1_RAT (Multidrug resistance-associated protein 1 OS=Rattus norvegicus GN=Abcc1 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.277e-51
Identity = 103/229 (44.98%), Postives = 146/229 (63.76%), Query Frame = 1
Query:    1 RKSRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +++ P  +WP  G+++ RD  +RY   +  VL+ I+ T  G +K GIVGRTG+GKS+L   LFRI E A                   R +++IIPQDPV+F G++R N+DP  +Y+DE++W AL+   L   V     KL+ +  E GEN S+GQRQLVCL R LL++ KIL+LDEATA+VD  TD+LIQ ++R  F D TV+TIAHR+ +++D   V++L  G I E
Sbjct: 1280 QETAPPSTWPHSGRVEFRDYCLRYREDLDLVLKHINVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIAKIGLHNLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDSTVLTIAHRLNTIMDYTRVIVLDKGEIRE 1508          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: BPT1_YEAST (Bile pigment transporter 1 OS=Saccharomyces cerevisiae GN=BPT1 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.716e-51
Identity = 105/248 (42.34%), Postives = 152/248 (61.29%), Query Frame = 1
Query:    4 KSRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQL-------------GDEVRKKEGK----LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            + RP+ +WPS G I+ ++   +Y  ++  VL  I+      +K GIVGRTG+GKSTL   LFRI+EP                    R+ L+IIPQD   FEGTV++N+DP   Y+++++  A+++  L             GD+  +++G     LD K+ ENG N S+GQRQL+CL R LL R KIL+LDEATASVD  TD +IQ ++R+ F D T++TIAHRI +V+DSD +++L  G + E+DS
Sbjct: 1289 EKRPDENWPSKGGIEFKNYSTKYRENLDPVLNNINVKIEPCEKVGIVGRTGAGKSTLSLALFRILEPTEGKIIIDGIDISDIGLFDLRSHLAIIPQDAQAFEGTVKTNLDPFNRYSEDELKRAVEQAHLKPHLEKMLHSKPRGDDSNEEDGNVNDILDVKINENGSNLSVGQRQLLCLARALLNRSKILVLDEATASVDMETDKIIQDTIRREFKDRTILTIAHRIDTVLDSDKIIVLDQGSVREFDS 1536          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: L259_DROME (Probable multidrug resistance-associated protein lethal(2)03659 OS=Drosophila melanogaster GN=l(2)03659 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.412e-50
Identity = 101/231 (43.72%), Postives = 149/231 (64.50%), Query Frame = 1
Query:   10 RPNHSWPSHGKIDLRDLQVRYAPHMPF--VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +P  +WP  G+I  ++L +RY P+     VL+ +S      +K GIVGRTG+GKS+LI  LFR+                       R ++SIIPQ+PV+F GT+R N+DP +EY+DE++W  L++ +L + V      L SK++E G N+S+GQRQLVCL R +L+  +IL++DEATA+VD  TD LIQ ++R  F DCTV+TIAHR+ ++IDSD V+++  G + E+ S
Sbjct: 1023 KPPKTWPEQGEIIFKELNLRYTPNAKAENVLKSLSFVIQPREKVGIVGRTGAGKSSLINALFRL-SYTDGSVLIDTRDTRQMGLHDLRRQISIIPQEPVLFSGTMRYNLDPFDEYSDEKLWGCLEEVKLKEVVSDLPDGLASKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDGLIQATIRSKFRDCTVLTIAHRLHTIIDSDKVMVMDAGRVVEFGS 1252          

HSP 2 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 58/223 (26.01%), Postives = 107/223 (47.98%), Query Frame = 1
Query:   43 IDLRDLQVRYAPHMP-FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD-TATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIE---EYDS 696
            I +RDL+ ++ P+ P + L GI+          ++G TGSGKS+LIQ +   ++  +                     LS   Q+  +F GTVR N+   +    ++  E + KC L  +      + ++ V E G   S GQ+  + L R + ++  I +LD+  ++VD +   +L  Q +R H    TV+ + H+   +   D +++L++G I+   +Y+S
Sbjct:  416 ISIRDLKAKWDPNSPDYTLSGINLEIKPGSVVAVIGLTGSGKSSLIQAILGELKANS-------------GQLQVNGSLSYTSQESWLFSGTVRQNILFGQPMDSQRYEEVVKKCALERDFDLLPLRDNTIVGERGATLSGGQKARISLARSVYRKASIYLLDDPLSAVDASVARHLFDQCVRGHLRGSTVVLVTHQEQFLPHVDQIVILANGQIKALGDYES 625          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC9_RABIT (ATP-binding cassette transporter sub-family C member 9 OS=Oryctolagus cuniculus GN=ABCC9 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.844e-50
Identity = 101/228 (44.30%), Postives = 150/228 (65.79%), Query Frame = 1
Query:   13 PNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            P H WP  G+I + DL VRY  ++  VL+ +       +K GI GRTGSGKS+L    FR+V+                     R+RLSII QDP++F G++R N+DP  + TD+++WEAL+  QL + V+   G LD+ VTE GEN+S+GQRQL CL R  +++  IL++DEATAS+D AT+N++Q+ +   F+D TV+TIAHR++S++D+D+VL+ S G++ E D+
Sbjct: 1303 PEH-WPQEGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLSGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSSIVDADLVLVFSEGILVECDT 1529          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCCD_DICDI (ABC transporter C family member 13 OS=Dictyostelium discoideum GN=abcC13 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.154e-50
Identity = 93/227 (40.97%), Postives = 144/227 (63.44%), Query Frame = 1
Query:   16 NHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            N  WPS G+I+ RD+++RY P     L+ +S         GIVGRTG+GKST+  +LFR+VE +                   R+ L I+PQDP +F GT+R N+DP  +YTD +IW AL+K +L   +     KL++ + E G+  S GQ+QL+CL R +LK  K++++DEAT+ +D  T +LI+Q+L ++F+DCT++TIAHR+ ++IDS  + ++  G + EYD+
Sbjct: 1094 NEKWPSKGEIEFRDVEIRYRPTSEPSLKNLSFKINSNDHIGIVGRTGAGKSTVGISLFRMVECSKGSILIDGIDISKIGLHDLRSSLGIVPQDPFIFSGTIRLNIDPFNKYTDSEIWVALEKVKLKSTISSMPLKLETMIEEGGDGLSFGQKQLLCLSRTILKNSKVVLMDEATSGIDYVTGDLIKQTLLENFNDCTMLTIAHRLDTIIDSTKIAVVDKGELIEYDT 1320          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC9_MOUSE (ATP-binding cassette transporter sub-family C member 9 OS=Mus musculus GN=Abcc9 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.196e-49
Identity = 100/228 (43.86%), Postives = 149/228 (65.35%), Query Frame = 1
Query:   13 PNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            P H WP  G+I + DL VRY  ++  VL+ +       +K GI GRTGSGKS+L    FR+V+                     R+RLSII QDP++F G++R N+DP  + TD+++WEAL+  QL + V+   G LD+ VTE GEN+S+GQRQL CL R  +++  IL++DEATAS+D AT+N++Q+ +   F+D TV+TIAHR++S++D+ +VL+ S G++ E D+
Sbjct: 1300 PEH-WPQEGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDATVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSSIVDAGLVLVFSEGILVECDT 1526          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC9_RAT (ATP-binding cassette transporter sub-family C member 9 OS=Rattus norvegicus GN=Abcc9 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.039e-49
Identity = 100/228 (43.86%), Postives = 149/228 (65.35%), Query Frame = 1
Query:   13 PNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            P H WP  G+I + DL VRY  ++  VL+ +       +K GI GRTGSGKS+L    FR+V+                     R+RLSII QDP++F G++R N+DP  + TD+++WEAL+  QL + V+   G LD+ VTE GEN+S+GQRQL CL R  +++  IL++DEATAS+D AT+N++Q+ +   F+D TV+TIAHR++S++D+ +VL+ S G++ E D+
Sbjct: 1299 PEH-WPQEGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDATVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSSIMDAGLVLVFSEGILVECDT 1525          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
YBT1_YEAST1.509e-5241.43ATP-dependent bile acid permease OS=Saccharomyces ... [more]
YH85_SCHPO1.971e-5244.16Uncharacterized ABC transporter ATP-binding protei... [more]
YCFI_YEAST1.971e-5244.78Metal resistance protein YCF1 OS=Saccharomyces cer... [more]
MRP1_RAT1.277e-5144.98Multidrug resistance-associated protein 1 OS=Rattu... [more]
BPT1_YEAST3.716e-5142.34Bile pigment transporter 1 OS=Saccharomyces cerevi... [more]
L259_DROME1.412e-5043.72Probable multidrug resistance-associated protein l... [more]
ABCC9_RABIT1.844e-5044.30ATP-binding cassette transporter sub-family C memb... [more]
ABCCD_DICDI9.154e-5040.97ABC transporter C family member 13 OS=Dictyosteliu... [more]
ABCC9_MOUSE1.196e-4943.86ATP-binding cassette transporter sub-family C memb... [more]
ABCC9_RAT2.039e-4943.86ATP-binding cassette transporter sub-family C memb... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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