FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHEON (Lipid A export ATP-binding/permease protein msbA OS=Shewanella oneidensis GN=msbA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 57/186 (30.65%), Postives = 98/186 (52.69%), Query Frame = 1
Query:  139 IVGRTGSGKSTLIQTLFRIVEPA-AXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE--EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +VGR+GSGKST+   + R      +                  R++++++ Q   +F  T+ +N+      E T EQI EA       + + +    LD++V ENG   S GQRQ + + R +L+   +L+LDEAT+++DT ++  IQQ L     + T + IAHR++++  +D +L++  G I E
Sbjct:  392 LVGRSGSGKSTIASLVTRFYTGLESGDILLDDVSIYDYSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEVTREQIIEAATLAHAMEFIEQLPDGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVE 577          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSYA2 (Lipid A export ATP-binding/permease protein msbA OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=msbA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 60/219 (27.40%), Postives = 107/219 (48.86%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I L ++ + Y P     L   +      +   +VGR+G+GKS+L+  L R +  ++                  R +++++ Q  V+F  TV +N+    L   T  ++ +A       D + +      S++   G   S GQRQ + + R LLK   IL+LDEAT+++D  ++  IQ++L     + T + IAHR+T++  +D + +L  G I E
Sbjct:  355 GEIKLDNISLVY-PDSTVALHDFNLDIRAGETVALVGRSGAGKSSLVNLLTRTLSTSSGQITLDGMPIEDIKLESLRAQIAMVNQQVVLFNTTVFNNIAYGSLAHKTPAEVEQAAKDAFAHDFIMQMPNGYQSEIGAEGLQLSGGQRQRLSIARALLKDAPILILDEATSALDNESEYYIQKALDNIMRNRTTLVIAHRLTTIESADRIAVLDGGRIVE 572          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_DESPS (Lipid A export ATP-binding/permease protein msbA OS=Desulfotalea psychrophila GN=msbA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 57/224 (25.45%), Postives = 106/224 (47.32%), Query Frame = 1
Query:   28 PSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            P    I+  D+   Y      +L  I+   P  +   IVG +G GK+TL   + R ++                     R +++++ Q  ++F  T+R+N+    +  T+E+I  A         + +     D+ + E G   S GQRQ + + R LL    IL+LDEAT+++DT ++  +Q++L     + T   IAHR++++ ++  ++++  G I E  S
Sbjct:  333 PFKESIEFHDVSFSYGTEK--ILSHINLKVPAGEALAIVGPSGGGKTTLTNLIPRFIDLQEGSITIDGTDIRDVTTNSLRNQIAMVTQQTILFNDTIRNNIAYGKDSCTEEEIRRAAKAAHALTFIEELPNGFDTALGEGGAKLSGGQRQRISIARALLADAPILILDEATSALDTESEREVQKALENLMQNRTTFVIAHRLSTIKNASRIVVVKKGKIVEEGS 554          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCB8_MOUSE (ATP-binding cassette sub-family B member 8, mitochondrial OS=Mus musculus GN=Abcb8 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 57/220 (25.91%), Postives = 114/220 (51.82%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTR-LSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I  +++   Y     F VL+  +   P  K   +VG++G GK+T+   L R  +P A                  R + +  I Q+PV+F  T+  N+   + + +DE+++ A  +    + +        + V E G   S GQ+Q + + R L+K+  +L+LDEAT+++D  ++ ++Q++L +  +  TV+ IAHR+++V  +  ++++++G + E
Sbjct:  452 GSITFQNVTFSYPCRPGFNVLKDFTLKLPSGKIVALVGQSGGGKTTVASLLERFYDPEAGSVTLDGHDLRTLNPSWLRGQVIGFISQEPVLFATTIMENIRFGKLDASDEEVYTAAREANAHEFISSFPDGYSTVVGERGTTLSGGQKQRLAIARALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAHRLSTVRAAHSIIVMANGQVCE 671          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB8B_ARATH (Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 59/225 (26.22%), Postives = 111/225 (49.33%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G+I+L+++   Y P+ P   VLR  S         G+VG +G GKST+I  + R  +                     R   +++ Q+PV++ G+++ N+     E T++++ EA       D +   E    ++  E G   S GQ+Q + + R  L+   IL+LDE T+S+D+ ++  +Q +L +  +  + T + +AHR+ ++ + D + L+  G + E  S
Sbjct:  996 GRIELKNIDFSY-PNRPSILVLRDFSLDIKPGTSIGLVGTSGCGKSTVIALIQRFYDVEIGCVKIDSENLRDINIKWYRKHTALVSQEPVVYSGSIQDNIILGRPEATEDEVVEAAKAANAHDFISAMEKGYKTECGERGVQLSGGQKQRIAIARAFLRSPIILLLDEVTSSLDSNSEQEVQDALARIMASRNMTTVVVAHRLNTLKNLDCIALIVDGTVIETGS 1219          

HSP 2 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 47/203 (23.15%), Postives = 99/203 (48.77%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +L+  + T    +   ++G +GSGKST+I  L R  +P                    R  + ++ QD  +F  ++  N+     + + +++  A         + +     D+ +   G   S GQ+Q + + R +++   IL+LDEAT+++D  ++ LIQ +L Q  +  T + +AH++++V  ++++ +L +G + E  S
Sbjct:  377 ILKDFTLTVDVGQSVALMGASGSGKSTVIALLQRFYDPCEGFVRIDGFDIKTLQLKWMRQHIGVVSQDHALFGTSIMENLMFGKNKASMDEVISAAKAANAHGFITQLPNGYDTHIGNRGALLSGGQKQRIAIARAIIRNPVILLLDEATSALDGESETLIQNALDQVAAGRTTLVVAHKLSTVRGANIIAMLENGSVRELGS 579          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAGC_DICDI (Serine protease/ABC transporter B family protein tagC OS=Dictyostelium discoideum GN=tagC PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 62/223 (27.80%), Postives = 114/223 (51.12%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTR--LSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEE 687
            G+I+ +++  RY P  P V  L  I+  F   K  G+VG +GSGKSTL++ + +   P                      R  ++ + Q+P +F+ +++ N+   L+  T E++ EA       + ++    + D+ +   G   S GQ++ + + R +  +RKI++LDE TA +D  ++  I QS++      TV+ +AH++ +V D D + +L  G L+EE
Sbjct: 1448 GEIEFKNVSFRY-PTRPDVQVLHNINMKFETGKCYGLVGPSGSGKSTLLELISKFY-PLRDGGNIIMDDIDIANIRPNNLRGFVTCVHQNPYLFDASIKDNIGYALDNPTIEEVIEAAKLAYAHEFIKDLPQQYDTVLGSAGSLLSGGQKKRIAIARAICAKRKIMLLDEITAELDPESEEAITQSIKVLTQGHTVVMVAHKVAAVRDCDKIFVLDKGYLVEE 1668          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAGA_DICDI (Serine protease/ABC transporter B family protein tagA OS=Dictyostelium discoideum GN=tagA PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 53/200 (26.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            VL  I   F     T ++G +G GKST++  + R+                          +SI+ Q+P +F G++  N+       T  +I EA  +    D +       D+ + E G   S GQ+Q + + R ++K   +L+LDE T+ +D  ++ L+Q S+ +     TVI +AHR+T+++ +D++ ++S   I E
Sbjct: 1391 VLEKIDIKFEPGTITALIGPSGGGKSTMLSLIGRLYNIDGGSITLDGTNIKDFNVPNLHEHISIVNQEPSLFSGSIAENIMFGKPTATRSEIIEACKQANAHDFITAMPEGYDTLIGERGTALSGGQKQRIAIARTIIKNPTVLLLDETTSELDVESEKLVQDSIDKLVVGRTVIIVAHRLTTILTADIIAVVSDSTISE 1590          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSYCK (Lipid A export ATP-binding/permease protein msbA OS=Psychrobacter cryohalolentis (strain K5) GN=msbA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 60/219 (27.40%), Postives = 107/219 (48.86%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+I L ++ + Y P     L   +      +   +VGR+G+GKS+L+  L R +  ++                  R +++++ Q  V+F  TV +N+    L   T  ++ +A       D + +      S++   G   S GQRQ + + R LLK   IL+LDEAT+++D  ++  IQ++L     + T + IAHR+T++  +D + +L  G I E
Sbjct:  358 GEIKLDNVSLVY-PDSTVALHDFNLDIRAGETVALVGRSGAGKSSLVNLLTRTLTTSSGQITLDGMPIEDIKLESLRAQIAMVNQQVVLFNTTVFNNIAYGSLAHKTPAEVEQAAKDAFAHDFIMQMPNGYQSEIGAEGLQLSGGQRQRLSIARALLKDAPILILDEATSALDNESEYYIQKALDNIMKNRTTLVIAHRLTTIESADRIAVLDGGQIVE 575          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CYDC_ECOLI (ATP-binding/permease protein cydC OS=Escherichia coli (strain K12) GN=cydC PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 61/216 (28.24%), Postives = 104/216 (48.15%), Query Frame = 1
Query:   43 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            + LRD+Q  Y       L+GIS      +   I+GRTG GKSTL+Q L R  +P                    R  +S++PQ   +F  T+R N+       +DE + E L +  +G E   ++  L+S + E G   S G+ + + + R LL    +++LDE T  +D  T++ I + L +   + TV+ + HR+  +     ++++ +G I E
Sbjct:  339 LTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRR--VGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIE 552          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHESR (Lipid A export ATP-binding/permease protein msbA OS=Shewanella sp. (strain MR-7) GN=msbA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 56/186 (30.11%), Postives = 98/186 (52.69%), Query Frame = 1
Query:  139 IVGRTGSGKSTLIQTLFRIVEPA-AXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE--EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +VGR+GSGKST+   + R      +                  R++++++ Q   +F  T+ +N+      E T EQI +A       + + +    LD++V ENG   S GQRQ + + R +L+   +L+LDEAT+++DT ++  IQQ L     + T + IAHR++++  +D +L++  G I E
Sbjct:  392 LVGRSGSGKSTIASLVTRFYTGLESGDIKLDDVSIYDYSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEATREQIIQAATLAHAMEFIEQLPEGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVE 577          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MSBA_SHEON7.074e-1830.65Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSYA29.239e-1827.40Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_DESPS9.239e-1825.45Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB8_MOUSE9.239e-1825.91ATP-binding cassette sub-family B member 8, mitoch... [more]
AB8B_ARATH9.239e-1826.22Putative ABC transporter B family member 8 OS=Arab... [more]
TAGC_DICDI1.207e-1727.80Serine protease/ABC transporter B family protein t... [more]
TAGA_DICDI1.207e-1726.50Serine protease/ABC transporter B family protein t... [more]
MSBA_PSYCK1.207e-1727.40Lipid A export ATP-binding/permease protein msbA O... [more]
CYDC_ECOLI1.207e-1728.24ATP-binding/permease protein cydC OS=Escherichia c... [more]
MSBA_SHESR2.688e-1730.11Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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